[p4est] branch master updated (99f006c -> b300d2f)
Matthias Maier
tamiko-guest at moszumanska.debian.org
Tue Nov 15 21:06:24 UTC 2016
This is an automated email from the git hooks/post-receive script.
tamiko-guest pushed a change to branch master
in repository p4est.
from 99f006c Prepare for upload to unstable
new 6fd5c2e New upstream version 1.1+git20161115
new 23eeeaf Merge tag 'upstream/1.1+git20161115'
new 8b13709 Update control files for version bump, update patches
new b300d2f remove failing loadsave tests
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitmodules | 1 -
AUTHORS | 6 +
Doxyfile.in | 6 +-
Makefile.am | 2 +-
README | 45 +-
...e-c27b6579bbf507787146bd88e1b2c4f998a9ea07.yaml | 42 +
build-aux/git-version-gen | 2 +-
config/p4est_petsc.m4 | 87 +-
configure.ac | 4 +-
debian/changelog | 6 +
debian/control | 8 +-
....1.install => libp4est-1.1+git20161115.install} | 0
... => libp4est-1.1+git20161115.lintian-overrides} | 2 +-
...install => libp4est-sc-1.1+git20161115.install} | 0
.../libp4est-sc-1.1+git20161115.lintian-overrides | 4 +
debian/libp4est-sc-1.1.lintian-overrides | 4 -
debian/patches/do_not_declare_library_dirty.patch | 4 +-
.../do_not_export_arch_dependent_config_h.patch | 36 +-
debian/patches/remove_loadsave_tests.patch | 54 +
debian/patches/series | 1 +
debian/rules | 2 +-
doc/FREEBSD | 23 +
doc/announce/nadv14no37.txt | 36 +
doc/attic/p8est_trilinear.c | 1 +
doc/attic/p8est_trilinear.h | 1 +
doc/attic/p8est_trilinear_lnodes.c | 1 +
doc/attic/p8est_trilinear_nodes.c | 1 +
doc/author_lahnert.txt | 1 +
doc/mainpage.dox | 9 +-
doc/morton/morton.py | 237 +++
doc/octreemap.pdf | Bin 0 -> 101014 bytes
doc/p4est-howto.pdf | Bin 0 -> 474947 bytes
doc/p4est_license_approval.pdf | Bin 0 -> 58924 bytes
doc/webpage/index.html | 107 +-
example/balance_seeds/balance_seeds2.c | 27 +-
example/balance_seeds/balance_seeds3.c | 1 +
example/mesh/mesh2.c | 86 +-
example/mesh/mesh3.c | 1 +
example/mesh/periodicity3.c | 1 +
example/p6est/Makefile.am | 25 -
example/p6est/p6est_io.c | 0
example/p6est/p6est_io.h | 0
example/points/points2.c | 1 +
example/points/points3.c | 1 +
example/simple/simple2.c | 1 +
example/simple/simple3.c | 1 +
example/steps/p4est_step1.c | 1 +
example/steps/p4est_step2.c | 1 +
example/steps/p4est_step3.c | 61 +-
example/steps/p4est_step4.c | 5 +-
example/steps/p8est_step1.c | 1 +
example/steps/p8est_step2.c | 1 +
example/steps/p8est_step3.c | 1 +
example/steps/p8est_step4.c | 1 +
example/tetgen/read_conn2.c | 4 +-
example/tetgen/read_conn3.c | 4 +-
example/tetgen/read_tetgen.c | 1 +
example/tetgen/write_conn2.c | 4 +-
example/tetgen/write_conn3.c | 4 +-
example/timings/bricks2.c | 1 +
example/timings/bricks3.c | 1 +
example/timings/loadconn2.c | 1 +
example/timings/loadconn3.c | 1 +
example/timings/timings2.c | 23 +-
example/timings/timings3.c | 1 +
example/timings/tsearch3.c | 13 +-
sc/AUTHORS | 10 +
sc/Doxyfile.in | 2 +-
sc/Makefile.am | 8 +-
sc/README | 12 +-
sc/config/sc_include.m4 | 2 +
sc/config/sc_memalign.m4 | 96 ++
sc/config/sc_mpi.m4 | 63 +
sc/config/sc_openmp.m4 | 49 +
sc/config/sc_pthread.m4 | 5 +
sc/configure.ac | 34 +-
sc/doc/FREEBSD | 23 +
sc/doc/author_kestener.txt | 1 +
sc/doc/sc_license_approval.pdf | Bin 0 -> 44626 bytes
sc/doc/v1.2.branches | 32 +
sc/example/bspline/bspline.c | 1 +
sc/example/bspline/bspline_per.c | 1 +
sc/example/dmatrix/dmatrix.c | 1 +
sc/example/function/function.c | 1 +
sc/example/logging/logging.c | 1 +
sc/example/openmp/Makefile.am | 13 +
sc/example/openmp/config_with_omp.txt | 11 +
sc/example/openmp/juqueen_job.js | 26 +
sc/example/openmp/openmp.c | 42 +
sc/example/options/Makefile.am | 7 +-
sc/example/options/logging.c | 89 ++
sc/example/options/options.c | 24 +-
.../{options.ini => sc_options_example.ini} | 0
.../{preload.ini => sc_options_preload.ini} | 0
sc/example/pthread/condvar.c | 1 +
sc/example/pthread/pthread.c | 3 +-
sc/example/testing/Makefile.am | 9 +
sc/example/testing/sc_test_shmem.c | 324 ++++
sc/example/warp/warp.c | 1 +
sc/iniparser/Makefile.am | 2 +-
.../{twisted.ini => sc_iniparser_twisted.ini} | 0
sc/src/Makefile.am | 6 +-
sc/src/sc.c | 391 ++++-
sc/src/sc.h | 121 +-
sc/src/sc_allgather.c | 1 +
sc/src/sc_allgather.h | 1 +
sc/src/sc_amr.c | 1 +
sc/src/sc_amr.h | 1 +
sc/src/sc_blas.c | 3 +-
sc/src/sc_blas.h | 16 +-
sc/src/sc_bspline.c | 1 +
sc/src/sc_bspline.h | 1 +
sc/src/sc_containers.c | 93 +-
sc/src/sc_containers.h | 107 +-
sc/src/sc_dmatrix.c | 170 ++-
sc/src/sc_dmatrix.h | 236 ++-
sc/src/sc_flops.c | 1 +
sc/src/sc_flops.h | 1 +
sc/src/sc_functions.c | 55 +
sc/src/sc_functions.h | 30 +
sc/src/sc_getopt.h | 1 +
sc/src/sc_io.c | 89 +-
sc/src/sc_io.h | 37 +-
sc/src/sc_keyvalue.c | 40 +
sc/src/sc_keyvalue.h | 154 +-
sc/src/sc_lapack.c | 3 +-
sc/src/sc_lapack.h | 25 +-
sc/src/sc_lua.h | 1 +
sc/src/sc_mpi.c | 383 ++++-
sc/src/sc_mpi.h | 121 +-
sc/src/sc_notify.c | 1 +
sc/src/sc_notify.h | 1 +
sc/src/sc_obstack.h | 1 +
sc/src/sc_options.c | 257 +++-
sc/src/sc_options.h | 233 +--
sc/src/{sc_sort.h => sc_private.h} | 32 +-
sc/src/sc_ranges.c | 1 +
sc/src/sc_ranges.h | 1 +
sc/src/sc_reduce.c | 1 +
sc/src/sc_reduce.h | 1 +
sc/src/sc_refcount.c | 110 ++
sc/src/sc_refcount.h | 120 ++
sc/src/sc_search.c | 3 +-
sc/src/sc_search.h | 1 +
sc/src/sc_shmem.c | 928 ++++++++++++
sc/src/sc_shmem.h | 169 +++
sc/src/sc_sort.c | 1 +
sc/src/sc_sort.h | 1 +
sc/src/sc_statistics.c | 9 +
sc/src/sc_statistics.h | 4 +
sc/src/sc_string.c | 102 ++
sc/src/sc_string.h | 107 ++
sc/src/sc_unique_counter.c | 77 +
sc/src/sc_unique_counter.h | 76 +
sc/src/sc_warp.c | 1 +
sc/src/sc_warp.h | 1 +
sc/test/Makefile.am | 5 +
sc/test/test_allgather.c | 1 +
sc/test/test_arrays.c | 5 +
sc/test/test_builtin.c | 1 +
sc/test/test_darray_work.c | 81 +
sc/test/test_dmatrix.c | 203 ++-
sc/test/test_dmatrix_pool.c | 1 +
sc/test/test_io_sink.c | 3 +-
sc/test/test_keyvalue.c | 1 +
sc/test/test_node_comm.c | 147 ++
sc/test/test_notify.c | 1 +
sc/test/test_pqueue.c | 1 +
sc/test/test_reduce.c | 1 +
sc/test/test_search.c | 1 +
sc/test/test_sort.c | 1 +
sc/test/test_sortb.c | 1 +
src/Makefile.am | 17 +-
src/p4est.c | 306 ++--
src/p4est.h | 44 +-
src/p4est_algorithms.c | 583 +++----
src/p4est_algorithms.h | 7 +
src/p4est_balance.c | 3 +-
src/p4est_balance.h | 3 +-
src/p4est_base.c | 1 +
src/p4est_base.h | 44 +-
src/p4est_bits.c | 24 +
src/p4est_bits.h | 10 +
src/p4est_communication.c | 287 +++-
src/p4est_communication.h | 108 +-
src/p4est_connectivity.c | 620 ++++++--
src/p4est_connectivity.h | 46 +-
src/p4est_connrefine.c | 179 +++
src/p4est_extended.h | 91 ++
src/p4est_geometry.c | 1 +
src/p4est_geometry.h | 4 +-
src/p4est_ghost.c | 286 +++-
src/p4est_ghost.h | 86 +-
src/p4est_io.c | 22 +-
src/p4est_io.h | 5 +-
src/p4est_iterate.c | 1 +
src/p4est_iterate.h | 5 +-
src/p4est_lnodes.c | 250 ++-
src/p4est_lnodes.h | 28 +-
src/p4est_mesh.c | 106 +-
src/p4est_mesh.h | 3 +-
src/p4est_nodes.c | 1 +
src/p4est_nodes.h | 1 +
src/p4est_plex.c | 660 ++++++--
src/p4est_plex.h | 1 +
src/p4est_points.c | 7 +-
src/p4est_points.h | 1 +
src/p4est_search.c | 176 ++-
src/p4est_search.h | 68 +-
src/p4est_to_p8est.h | 86 +-
src/p4est_vtk.c | 1591 ++++++++++++++------
src/p4est_vtk.h | 305 ++--
src/p4est_wrap.c | 492 +++++-
src/p4est_wrap.h | 201 ++-
{example/p6est => src}/p6est.c | 470 +++++-
{example/p6est => src}/p6est.h | 36 +-
src/p6est_communication.c | 196 +++
src/p6est_communication.h | 114 ++
{example/p6est => src}/p6est_extended.h | 30 +-
{example/p6est => src}/p6est_ghost.c | 3 +-
{example/p6est => src}/p6est_ghost.h | 9 +-
{example/p6est => src}/p6est_lnodes.c | 82 +-
{example/p6est => src}/p6est_lnodes.h | 15 +-
{example/p6est => src}/p6est_profile.c | 42 +-
{example/p6est => src}/p6est_profile.h | 9 +-
{example/p6est => src}/p6est_vtk.c | 3 +-
{example/p6est => src}/p6est_vtk.h | 3 +-
src/p8est.c | 1 +
src/p8est.h | 38 +-
src/p8est_algorithms.c | 1 +
src/p8est_algorithms.h | 7 +
src/p8est_balance.c | 3 +-
src/p8est_balance.h | 3 +-
src/p8est_bits.c | 1 +
src/p8est_bits.h | 10 +
src/p8est_communication.c | 1 +
src/p8est_communication.h | 108 +-
src/p8est_connectivity.c | 200 ++-
src/p8est_connectivity.h | 102 +-
.../balance_seeds3.c => src/p8est_connrefine.c | 3 +-
src/p8est_extended.h | 91 ++
src/p8est_geometry.c | 1 +
src/p8est_geometry.h | 4 +-
src/p8est_ghost.c | 1 +
src/p8est_ghost.h | 88 +-
src/p8est_io.c | 2 +-
src/p8est_io.h | 5 +-
src/p8est_iterate.c | 1 +
src/p8est_iterate.h | 7 +-
src/p8est_lnodes.c | 1 +
src/p8est_lnodes.h | 31 +-
src/p8est_mesh.c | 1 +
src/p8est_mesh.h | 5 +-
src/p8est_nodes.c | 1 +
src/p8est_nodes.h | 1 +
src/p8est_plex.c | 1 +
src/p8est_plex.h | 1 +
src/p8est_points.c | 1 +
src/p8est_points.h | 1 +
src/p8est_search.c | 1 +
src/p8est_search.h | 107 +-
src/p8est_tets_hexes.c | 1 +
src/p8est_tets_hexes.h | 1 +
src/p8est_vtk.c | 1 +
src/p8est_vtk.h | 310 ++--
src/p8est_wrap.c | 4 +-
src/p8est_wrap.h | 206 ++-
test/Makefile.am | 76 +-
example/p6est/test/test_all.c => test/test_all6.c | 12 +-
test/test_balance2.c | 1 +
test/test_balance3.c | 1 +
test/test_balance_seeds2.c | 3 +-
test/test_balance_seeds3.c | 5 +-
test/test_balance_type2.c | 1 +
test/test_balance_type3.c | 1 +
test/test_brick2.c | 1 +
test/test_brick3.c | 1 +
test/test_coarsen2.c | 1 +
test/test_coarsen3.c | 1 +
test/test_comm.c | 1 +
test/test_complete_subtree.c | 165 ++
test/test_conn_complete2.c | 1 +
test/test_conn_complete3.c | 1 +
test/test_conn_reduce2.c | 1 +
test/test_conn_reduce3.c | 1 +
test/test_conn_transformation2.c | 218 +++
.../test_conn_transformation3.c | 3 +-
test/{test_join2.c => test_connrefine2.c} | 29 +-
.../balance_seeds3.c => test/test_connrefine3.c | 3 +-
test/test_edge_face_corners3.c | 1 +
test/test_face_transform3.c | 1 +
test/test_ghost2.c | 68 +
test/test_ghost3.c | 1 +
test/test_hash.c | 1 +
test/test_iterate2.c | 3 +-
test/test_iterate3.c | 3 +-
test/test_join2.c | 14 +-
test/test_join3.c | 3 +-
test/test_lnodes2.c | 3 +-
test/test_lnodes3.c | 3 +-
test/test_load2.c | 109 ++
.../balance_seeds3.c => test/test_load3.c | 3 +-
test/test_loadsave2.c | 1 +
test/test_loadsave3.c | 1 +
test/test_order.c | 1 +
test/test_partition2.c | 17 +-
test/test_partition3.c | 1 +
test/test_partition_corr2.c | 1 +
test/test_partition_corr3.c | 1 +
test/test_periodic3.c | 49 +-
test/test_plex2.c | 131 +-
test/test_plex3.c | 3 +-
test/test_quadrants2.c | 1 +
test/test_quadrants3.c | 1 +
test/test_reorder2.c | 3 +-
test/test_reorder3.c | 3 +-
test/test_replace2.c | 3 +-
test/test_replace3.c | 3 +-
test/test_search2.c | 31 +-
test/test_search3.c | 1 +
test/test_subcomm2.c | 291 ++++
.../balance_seeds3.c => test/test_subcomm3.c | 3 +-
test/test_valid2.c | 29 +-
test/test_valid3.c | 1 +
test/test_wrap2.c | 65 +-
test/test_wrap3.c | 4 +-
326 files changed, 14627 insertions(+), 2568 deletions(-)
create mode 100644 bugs/issue-c27b6579bbf507787146bd88e1b2c4f998a9ea07.yaml
rename debian/{libp4est-1.1.install => libp4est-1.1+git20161115.install} (100%)
rename debian/{libp4est-1.1.lintian-overrides => libp4est-1.1+git20161115.lintian-overrides} (56%)
rename debian/{libp4est-sc-1.1.install => libp4est-sc-1.1+git20161115.install} (100%)
create mode 100644 debian/libp4est-sc-1.1+git20161115.lintian-overrides
delete mode 100644 debian/libp4est-sc-1.1.lintian-overrides
create mode 100644 debian/patches/remove_loadsave_tests.patch
create mode 100644 doc/FREEBSD
create mode 100644 doc/announce/nadv14no37.txt
create mode 100644 doc/author_lahnert.txt
create mode 100755 doc/morton/morton.py
create mode 100644 doc/octreemap.pdf
create mode 100644 doc/p4est-howto.pdf
create mode 100644 doc/p4est_license_approval.pdf
delete mode 100644 example/p6est/Makefile.am
delete mode 100644 example/p6est/p6est_io.c
delete mode 100644 example/p6est/p6est_io.h
create mode 100644 sc/config/sc_memalign.m4
create mode 100644 sc/config/sc_openmp.m4
create mode 100644 sc/doc/FREEBSD
create mode 100644 sc/doc/author_kestener.txt
create mode 100644 sc/doc/sc_license_approval.pdf
create mode 100644 sc/doc/v1.2.branches
create mode 100644 sc/example/openmp/Makefile.am
create mode 100644 sc/example/openmp/config_with_omp.txt
create mode 100644 sc/example/openmp/juqueen_job.js
create mode 100644 sc/example/openmp/openmp.c
create mode 100644 sc/example/options/logging.c
rename sc/example/options/{options.ini => sc_options_example.ini} (100%)
rename sc/example/options/{preload.ini => sc_options_preload.ini} (100%)
create mode 100644 sc/example/testing/Makefile.am
create mode 100644 sc/example/testing/sc_test_shmem.c
rename sc/iniparser/{twisted.ini => sc_iniparser_twisted.ini} (100%)
copy sc/src/{sc_sort.h => sc_private.h} (54%)
create mode 100644 sc/src/sc_refcount.c
create mode 100644 sc/src/sc_refcount.h
create mode 100644 sc/src/sc_shmem.c
create mode 100644 sc/src/sc_shmem.h
create mode 100644 sc/src/sc_string.c
create mode 100644 sc/src/sc_string.h
create mode 100644 sc/src/sc_unique_counter.c
create mode 100644 sc/src/sc_unique_counter.h
create mode 100644 sc/test/test_darray_work.c
create mode 100644 sc/test/test_node_comm.c
create mode 100644 src/p4est_connrefine.c
rename {example/p6est => src}/p6est.c (85%)
rename {example/p6est => src}/p6est.h (94%)
create mode 100644 src/p6est_communication.c
create mode 100644 src/p6est_communication.h
rename {example/p6est => src}/p6est_extended.h (93%)
rename {example/p6est => src}/p6est_ghost.c (99%)
rename {example/p6est => src}/p6est_ghost.h (98%)
rename {example/p6est => src}/p6est_lnodes.c (83%)
rename {example/p6est => src}/p6est_lnodes.h (94%)
rename {example/p6est => src}/p6est_profile.c (97%)
rename {example/p6est => src}/p6est_profile.h (95%)
rename {example/p6est => src}/p6est_vtk.c (99%)
rename {example/p6est => src}/p6est_vtk.h (98%)
copy example/balance_seeds/balance_seeds3.c => src/p8est_connrefine.c (92%)
rename example/p6est/test/test_all.c => test/test_all6.c (97%)
create mode 100644 test/test_complete_subtree.c
create mode 100644 test/test_conn_transformation2.c
copy example/balance_seeds/balance_seeds3.c => test/test_conn_transformation3.c (91%)
copy test/{test_join2.c => test_connrefine2.c} (68%)
copy example/balance_seeds/balance_seeds3.c => test/test_connrefine3.c (92%)
create mode 100644 test/test_load2.c
copy example/balance_seeds/balance_seeds3.c => test/test_load3.c (92%)
create mode 100644 test/test_subcomm2.c
copy example/balance_seeds/balance_seeds3.c => test/test_subcomm3.c (92%)
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