[p4est] branch master updated (99f006c -> b300d2f)

Matthias Maier tamiko-guest at moszumanska.debian.org
Tue Nov 15 21:06:24 UTC 2016


This is an automated email from the git hooks/post-receive script.

tamiko-guest pushed a change to branch master
in repository p4est.

      from  99f006c   Prepare for upload to unstable
       new  6fd5c2e   New upstream version 1.1+git20161115
       new  23eeeaf   Merge tag 'upstream/1.1+git20161115'
       new  8b13709   Update control files for version bump, update patches
       new  b300d2f   remove failing loadsave tests

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitmodules                                        |    1 -
 AUTHORS                                            |    6 +
 Doxyfile.in                                        |    6 +-
 Makefile.am                                        |    2 +-
 README                                             |   45 +-
 ...e-c27b6579bbf507787146bd88e1b2c4f998a9ea07.yaml |   42 +
 build-aux/git-version-gen                          |    2 +-
 config/p4est_petsc.m4                              |   87 +-
 configure.ac                                       |    4 +-
 debian/changelog                                   |    6 +
 debian/control                                     |    8 +-
 ....1.install => libp4est-1.1+git20161115.install} |    0
 ... => libp4est-1.1+git20161115.lintian-overrides} |    2 +-
 ...install => libp4est-sc-1.1+git20161115.install} |    0
 .../libp4est-sc-1.1+git20161115.lintian-overrides  |    4 +
 debian/libp4est-sc-1.1.lintian-overrides           |    4 -
 debian/patches/do_not_declare_library_dirty.patch  |    4 +-
 .../do_not_export_arch_dependent_config_h.patch    |   36 +-
 debian/patches/remove_loadsave_tests.patch         |   54 +
 debian/patches/series                              |    1 +
 debian/rules                                       |    2 +-
 doc/FREEBSD                                        |   23 +
 doc/announce/nadv14no37.txt                        |   36 +
 doc/attic/p8est_trilinear.c                        |    1 +
 doc/attic/p8est_trilinear.h                        |    1 +
 doc/attic/p8est_trilinear_lnodes.c                 |    1 +
 doc/attic/p8est_trilinear_nodes.c                  |    1 +
 doc/author_lahnert.txt                             |    1 +
 doc/mainpage.dox                                   |    9 +-
 doc/morton/morton.py                               |  237 +++
 doc/octreemap.pdf                                  |  Bin 0 -> 101014 bytes
 doc/p4est-howto.pdf                                |  Bin 0 -> 474947 bytes
 doc/p4est_license_approval.pdf                     |  Bin 0 -> 58924 bytes
 doc/webpage/index.html                             |  107 +-
 example/balance_seeds/balance_seeds2.c             |   27 +-
 example/balance_seeds/balance_seeds3.c             |    1 +
 example/mesh/mesh2.c                               |   86 +-
 example/mesh/mesh3.c                               |    1 +
 example/mesh/periodicity3.c                        |    1 +
 example/p6est/Makefile.am                          |   25 -
 example/p6est/p6est_io.c                           |    0
 example/p6est/p6est_io.h                           |    0
 example/points/points2.c                           |    1 +
 example/points/points3.c                           |    1 +
 example/simple/simple2.c                           |    1 +
 example/simple/simple3.c                           |    1 +
 example/steps/p4est_step1.c                        |    1 +
 example/steps/p4est_step2.c                        |    1 +
 example/steps/p4est_step3.c                        |   61 +-
 example/steps/p4est_step4.c                        |    5 +-
 example/steps/p8est_step1.c                        |    1 +
 example/steps/p8est_step2.c                        |    1 +
 example/steps/p8est_step3.c                        |    1 +
 example/steps/p8est_step4.c                        |    1 +
 example/tetgen/read_conn2.c                        |    4 +-
 example/tetgen/read_conn3.c                        |    4 +-
 example/tetgen/read_tetgen.c                       |    1 +
 example/tetgen/write_conn2.c                       |    4 +-
 example/tetgen/write_conn3.c                       |    4 +-
 example/timings/bricks2.c                          |    1 +
 example/timings/bricks3.c                          |    1 +
 example/timings/loadconn2.c                        |    1 +
 example/timings/loadconn3.c                        |    1 +
 example/timings/timings2.c                         |   23 +-
 example/timings/timings3.c                         |    1 +
 example/timings/tsearch3.c                         |   13 +-
 sc/AUTHORS                                         |   10 +
 sc/Doxyfile.in                                     |    2 +-
 sc/Makefile.am                                     |    8 +-
 sc/README                                          |   12 +-
 sc/config/sc_include.m4                            |    2 +
 sc/config/sc_memalign.m4                           |   96 ++
 sc/config/sc_mpi.m4                                |   63 +
 sc/config/sc_openmp.m4                             |   49 +
 sc/config/sc_pthread.m4                            |    5 +
 sc/configure.ac                                    |   34 +-
 sc/doc/FREEBSD                                     |   23 +
 sc/doc/author_kestener.txt                         |    1 +
 sc/doc/sc_license_approval.pdf                     |  Bin 0 -> 44626 bytes
 sc/doc/v1.2.branches                               |   32 +
 sc/example/bspline/bspline.c                       |    1 +
 sc/example/bspline/bspline_per.c                   |    1 +
 sc/example/dmatrix/dmatrix.c                       |    1 +
 sc/example/function/function.c                     |    1 +
 sc/example/logging/logging.c                       |    1 +
 sc/example/openmp/Makefile.am                      |   13 +
 sc/example/openmp/config_with_omp.txt              |   11 +
 sc/example/openmp/juqueen_job.js                   |   26 +
 sc/example/openmp/openmp.c                         |   42 +
 sc/example/options/Makefile.am                     |    7 +-
 sc/example/options/logging.c                       |   89 ++
 sc/example/options/options.c                       |   24 +-
 .../{options.ini => sc_options_example.ini}        |    0
 .../{preload.ini => sc_options_preload.ini}        |    0
 sc/example/pthread/condvar.c                       |    1 +
 sc/example/pthread/pthread.c                       |    3 +-
 sc/example/testing/Makefile.am                     |    9 +
 sc/example/testing/sc_test_shmem.c                 |  324 ++++
 sc/example/warp/warp.c                             |    1 +
 sc/iniparser/Makefile.am                           |    2 +-
 .../{twisted.ini => sc_iniparser_twisted.ini}      |    0
 sc/src/Makefile.am                                 |    6 +-
 sc/src/sc.c                                        |  391 ++++-
 sc/src/sc.h                                        |  121 +-
 sc/src/sc_allgather.c                              |    1 +
 sc/src/sc_allgather.h                              |    1 +
 sc/src/sc_amr.c                                    |    1 +
 sc/src/sc_amr.h                                    |    1 +
 sc/src/sc_blas.c                                   |    3 +-
 sc/src/sc_blas.h                                   |   16 +-
 sc/src/sc_bspline.c                                |    1 +
 sc/src/sc_bspline.h                                |    1 +
 sc/src/sc_containers.c                             |   93 +-
 sc/src/sc_containers.h                             |  107 +-
 sc/src/sc_dmatrix.c                                |  170 ++-
 sc/src/sc_dmatrix.h                                |  236 ++-
 sc/src/sc_flops.c                                  |    1 +
 sc/src/sc_flops.h                                  |    1 +
 sc/src/sc_functions.c                              |   55 +
 sc/src/sc_functions.h                              |   30 +
 sc/src/sc_getopt.h                                 |    1 +
 sc/src/sc_io.c                                     |   89 +-
 sc/src/sc_io.h                                     |   37 +-
 sc/src/sc_keyvalue.c                               |   40 +
 sc/src/sc_keyvalue.h                               |  154 +-
 sc/src/sc_lapack.c                                 |    3 +-
 sc/src/sc_lapack.h                                 |   25 +-
 sc/src/sc_lua.h                                    |    1 +
 sc/src/sc_mpi.c                                    |  383 ++++-
 sc/src/sc_mpi.h                                    |  121 +-
 sc/src/sc_notify.c                                 |    1 +
 sc/src/sc_notify.h                                 |    1 +
 sc/src/sc_obstack.h                                |    1 +
 sc/src/sc_options.c                                |  257 +++-
 sc/src/sc_options.h                                |  233 +--
 sc/src/{sc_sort.h => sc_private.h}                 |   32 +-
 sc/src/sc_ranges.c                                 |    1 +
 sc/src/sc_ranges.h                                 |    1 +
 sc/src/sc_reduce.c                                 |    1 +
 sc/src/sc_reduce.h                                 |    1 +
 sc/src/sc_refcount.c                               |  110 ++
 sc/src/sc_refcount.h                               |  120 ++
 sc/src/sc_search.c                                 |    3 +-
 sc/src/sc_search.h                                 |    1 +
 sc/src/sc_shmem.c                                  |  928 ++++++++++++
 sc/src/sc_shmem.h                                  |  169 +++
 sc/src/sc_sort.c                                   |    1 +
 sc/src/sc_sort.h                                   |    1 +
 sc/src/sc_statistics.c                             |    9 +
 sc/src/sc_statistics.h                             |    4 +
 sc/src/sc_string.c                                 |  102 ++
 sc/src/sc_string.h                                 |  107 ++
 sc/src/sc_unique_counter.c                         |   77 +
 sc/src/sc_unique_counter.h                         |   76 +
 sc/src/sc_warp.c                                   |    1 +
 sc/src/sc_warp.h                                   |    1 +
 sc/test/Makefile.am                                |    5 +
 sc/test/test_allgather.c                           |    1 +
 sc/test/test_arrays.c                              |    5 +
 sc/test/test_builtin.c                             |    1 +
 sc/test/test_darray_work.c                         |   81 +
 sc/test/test_dmatrix.c                             |  203 ++-
 sc/test/test_dmatrix_pool.c                        |    1 +
 sc/test/test_io_sink.c                             |    3 +-
 sc/test/test_keyvalue.c                            |    1 +
 sc/test/test_node_comm.c                           |  147 ++
 sc/test/test_notify.c                              |    1 +
 sc/test/test_pqueue.c                              |    1 +
 sc/test/test_reduce.c                              |    1 +
 sc/test/test_search.c                              |    1 +
 sc/test/test_sort.c                                |    1 +
 sc/test/test_sortb.c                               |    1 +
 src/Makefile.am                                    |   17 +-
 src/p4est.c                                        |  306 ++--
 src/p4est.h                                        |   44 +-
 src/p4est_algorithms.c                             |  583 +++----
 src/p4est_algorithms.h                             |    7 +
 src/p4est_balance.c                                |    3 +-
 src/p4est_balance.h                                |    3 +-
 src/p4est_base.c                                   |    1 +
 src/p4est_base.h                                   |   44 +-
 src/p4est_bits.c                                   |   24 +
 src/p4est_bits.h                                   |   10 +
 src/p4est_communication.c                          |  287 +++-
 src/p4est_communication.h                          |  108 +-
 src/p4est_connectivity.c                           |  620 ++++++--
 src/p4est_connectivity.h                           |   46 +-
 src/p4est_connrefine.c                             |  179 +++
 src/p4est_extended.h                               |   91 ++
 src/p4est_geometry.c                               |    1 +
 src/p4est_geometry.h                               |    4 +-
 src/p4est_ghost.c                                  |  286 +++-
 src/p4est_ghost.h                                  |   86 +-
 src/p4est_io.c                                     |   22 +-
 src/p4est_io.h                                     |    5 +-
 src/p4est_iterate.c                                |    1 +
 src/p4est_iterate.h                                |    5 +-
 src/p4est_lnodes.c                                 |  250 ++-
 src/p4est_lnodes.h                                 |   28 +-
 src/p4est_mesh.c                                   |  106 +-
 src/p4est_mesh.h                                   |    3 +-
 src/p4est_nodes.c                                  |    1 +
 src/p4est_nodes.h                                  |    1 +
 src/p4est_plex.c                                   |  660 ++++++--
 src/p4est_plex.h                                   |    1 +
 src/p4est_points.c                                 |    7 +-
 src/p4est_points.h                                 |    1 +
 src/p4est_search.c                                 |  176 ++-
 src/p4est_search.h                                 |   68 +-
 src/p4est_to_p8est.h                               |   86 +-
 src/p4est_vtk.c                                    | 1591 ++++++++++++++------
 src/p4est_vtk.h                                    |  305 ++--
 src/p4est_wrap.c                                   |  492 +++++-
 src/p4est_wrap.h                                   |  201 ++-
 {example/p6est => src}/p6est.c                     |  470 +++++-
 {example/p6est => src}/p6est.h                     |   36 +-
 src/p6est_communication.c                          |  196 +++
 src/p6est_communication.h                          |  114 ++
 {example/p6est => src}/p6est_extended.h            |   30 +-
 {example/p6est => src}/p6est_ghost.c               |    3 +-
 {example/p6est => src}/p6est_ghost.h               |    9 +-
 {example/p6est => src}/p6est_lnodes.c              |   82 +-
 {example/p6est => src}/p6est_lnodes.h              |   15 +-
 {example/p6est => src}/p6est_profile.c             |   42 +-
 {example/p6est => src}/p6est_profile.h             |    9 +-
 {example/p6est => src}/p6est_vtk.c                 |    3 +-
 {example/p6est => src}/p6est_vtk.h                 |    3 +-
 src/p8est.c                                        |    1 +
 src/p8est.h                                        |   38 +-
 src/p8est_algorithms.c                             |    1 +
 src/p8est_algorithms.h                             |    7 +
 src/p8est_balance.c                                |    3 +-
 src/p8est_balance.h                                |    3 +-
 src/p8est_bits.c                                   |    1 +
 src/p8est_bits.h                                   |   10 +
 src/p8est_communication.c                          |    1 +
 src/p8est_communication.h                          |  108 +-
 src/p8est_connectivity.c                           |  200 ++-
 src/p8est_connectivity.h                           |  102 +-
 .../balance_seeds3.c => src/p8est_connrefine.c     |    3 +-
 src/p8est_extended.h                               |   91 ++
 src/p8est_geometry.c                               |    1 +
 src/p8est_geometry.h                               |    4 +-
 src/p8est_ghost.c                                  |    1 +
 src/p8est_ghost.h                                  |   88 +-
 src/p8est_io.c                                     |    2 +-
 src/p8est_io.h                                     |    5 +-
 src/p8est_iterate.c                                |    1 +
 src/p8est_iterate.h                                |    7 +-
 src/p8est_lnodes.c                                 |    1 +
 src/p8est_lnodes.h                                 |   31 +-
 src/p8est_mesh.c                                   |    1 +
 src/p8est_mesh.h                                   |    5 +-
 src/p8est_nodes.c                                  |    1 +
 src/p8est_nodes.h                                  |    1 +
 src/p8est_plex.c                                   |    1 +
 src/p8est_plex.h                                   |    1 +
 src/p8est_points.c                                 |    1 +
 src/p8est_points.h                                 |    1 +
 src/p8est_search.c                                 |    1 +
 src/p8est_search.h                                 |  107 +-
 src/p8est_tets_hexes.c                             |    1 +
 src/p8est_tets_hexes.h                             |    1 +
 src/p8est_vtk.c                                    |    1 +
 src/p8est_vtk.h                                    |  310 ++--
 src/p8est_wrap.c                                   |    4 +-
 src/p8est_wrap.h                                   |  206 ++-
 test/Makefile.am                                   |   76 +-
 example/p6est/test/test_all.c => test/test_all6.c  |   12 +-
 test/test_balance2.c                               |    1 +
 test/test_balance3.c                               |    1 +
 test/test_balance_seeds2.c                         |    3 +-
 test/test_balance_seeds3.c                         |    5 +-
 test/test_balance_type2.c                          |    1 +
 test/test_balance_type3.c                          |    1 +
 test/test_brick2.c                                 |    1 +
 test/test_brick3.c                                 |    1 +
 test/test_coarsen2.c                               |    1 +
 test/test_coarsen3.c                               |    1 +
 test/test_comm.c                                   |    1 +
 test/test_complete_subtree.c                       |  165 ++
 test/test_conn_complete2.c                         |    1 +
 test/test_conn_complete3.c                         |    1 +
 test/test_conn_reduce2.c                           |    1 +
 test/test_conn_reduce3.c                           |    1 +
 test/test_conn_transformation2.c                   |  218 +++
 .../test_conn_transformation3.c                    |    3 +-
 test/{test_join2.c => test_connrefine2.c}          |   29 +-
 .../balance_seeds3.c => test/test_connrefine3.c    |    3 +-
 test/test_edge_face_corners3.c                     |    1 +
 test/test_face_transform3.c                        |    1 +
 test/test_ghost2.c                                 |   68 +
 test/test_ghost3.c                                 |    1 +
 test/test_hash.c                                   |    1 +
 test/test_iterate2.c                               |    3 +-
 test/test_iterate3.c                               |    3 +-
 test/test_join2.c                                  |   14 +-
 test/test_join3.c                                  |    3 +-
 test/test_lnodes2.c                                |    3 +-
 test/test_lnodes3.c                                |    3 +-
 test/test_load2.c                                  |  109 ++
 .../balance_seeds3.c => test/test_load3.c          |    3 +-
 test/test_loadsave2.c                              |    1 +
 test/test_loadsave3.c                              |    1 +
 test/test_order.c                                  |    1 +
 test/test_partition2.c                             |   17 +-
 test/test_partition3.c                             |    1 +
 test/test_partition_corr2.c                        |    1 +
 test/test_partition_corr3.c                        |    1 +
 test/test_periodic3.c                              |   49 +-
 test/test_plex2.c                                  |  131 +-
 test/test_plex3.c                                  |    3 +-
 test/test_quadrants2.c                             |    1 +
 test/test_quadrants3.c                             |    1 +
 test/test_reorder2.c                               |    3 +-
 test/test_reorder3.c                               |    3 +-
 test/test_replace2.c                               |    3 +-
 test/test_replace3.c                               |    3 +-
 test/test_search2.c                                |   31 +-
 test/test_search3.c                                |    1 +
 test/test_subcomm2.c                               |  291 ++++
 .../balance_seeds3.c => test/test_subcomm3.c       |    3 +-
 test/test_valid2.c                                 |   29 +-
 test/test_valid3.c                                 |    1 +
 test/test_wrap2.c                                  |   65 +-
 test/test_wrap3.c                                  |    4 +-
 326 files changed, 14627 insertions(+), 2568 deletions(-)
 create mode 100644 bugs/issue-c27b6579bbf507787146bd88e1b2c4f998a9ea07.yaml
 rename debian/{libp4est-1.1.install => libp4est-1.1+git20161115.install} (100%)
 rename debian/{libp4est-1.1.lintian-overrides => libp4est-1.1+git20161115.lintian-overrides} (56%)
 rename debian/{libp4est-sc-1.1.install => libp4est-sc-1.1+git20161115.install} (100%)
 create mode 100644 debian/libp4est-sc-1.1+git20161115.lintian-overrides
 delete mode 100644 debian/libp4est-sc-1.1.lintian-overrides
 create mode 100644 debian/patches/remove_loadsave_tests.patch
 create mode 100644 doc/FREEBSD
 create mode 100644 doc/announce/nadv14no37.txt
 create mode 100644 doc/author_lahnert.txt
 create mode 100755 doc/morton/morton.py
 create mode 100644 doc/octreemap.pdf
 create mode 100644 doc/p4est-howto.pdf
 create mode 100644 doc/p4est_license_approval.pdf
 delete mode 100644 example/p6est/Makefile.am
 delete mode 100644 example/p6est/p6est_io.c
 delete mode 100644 example/p6est/p6est_io.h
 create mode 100644 sc/config/sc_memalign.m4
 create mode 100644 sc/config/sc_openmp.m4
 create mode 100644 sc/doc/FREEBSD
 create mode 100644 sc/doc/author_kestener.txt
 create mode 100644 sc/doc/sc_license_approval.pdf
 create mode 100644 sc/doc/v1.2.branches
 create mode 100644 sc/example/openmp/Makefile.am
 create mode 100644 sc/example/openmp/config_with_omp.txt
 create mode 100644 sc/example/openmp/juqueen_job.js
 create mode 100644 sc/example/openmp/openmp.c
 create mode 100644 sc/example/options/logging.c
 rename sc/example/options/{options.ini => sc_options_example.ini} (100%)
 rename sc/example/options/{preload.ini => sc_options_preload.ini} (100%)
 create mode 100644 sc/example/testing/Makefile.am
 create mode 100644 sc/example/testing/sc_test_shmem.c
 rename sc/iniparser/{twisted.ini => sc_iniparser_twisted.ini} (100%)
 copy sc/src/{sc_sort.h => sc_private.h} (54%)
 create mode 100644 sc/src/sc_refcount.c
 create mode 100644 sc/src/sc_refcount.h
 create mode 100644 sc/src/sc_shmem.c
 create mode 100644 sc/src/sc_shmem.h
 create mode 100644 sc/src/sc_string.c
 create mode 100644 sc/src/sc_string.h
 create mode 100644 sc/src/sc_unique_counter.c
 create mode 100644 sc/src/sc_unique_counter.h
 create mode 100644 sc/test/test_darray_work.c
 create mode 100644 sc/test/test_node_comm.c
 create mode 100644 src/p4est_connrefine.c
 rename {example/p6est => src}/p6est.c (85%)
 rename {example/p6est => src}/p6est.h (94%)
 create mode 100644 src/p6est_communication.c
 create mode 100644 src/p6est_communication.h
 rename {example/p6est => src}/p6est_extended.h (93%)
 rename {example/p6est => src}/p6est_ghost.c (99%)
 rename {example/p6est => src}/p6est_ghost.h (98%)
 rename {example/p6est => src}/p6est_lnodes.c (83%)
 rename {example/p6est => src}/p6est_lnodes.h (94%)
 rename {example/p6est => src}/p6est_profile.c (97%)
 rename {example/p6est => src}/p6est_profile.h (95%)
 rename {example/p6est => src}/p6est_vtk.c (99%)
 rename {example/p6est => src}/p6est_vtk.h (98%)
 copy example/balance_seeds/balance_seeds3.c => src/p8est_connrefine.c (92%)
 rename example/p6est/test/test_all.c => test/test_all6.c (97%)
 create mode 100644 test/test_complete_subtree.c
 create mode 100644 test/test_conn_transformation2.c
 copy example/balance_seeds/balance_seeds3.c => test/test_conn_transformation3.c (91%)
 copy test/{test_join2.c => test_connrefine2.c} (68%)
 copy example/balance_seeds/balance_seeds3.c => test/test_connrefine3.c (92%)
 create mode 100644 test/test_load2.c
 copy example/balance_seeds/balance_seeds3.c => test/test_load3.c (92%)
 create mode 100644 test/test_subcomm2.c
 copy example/balance_seeds/balance_seeds3.c => test/test_subcomm3.c (92%)

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