[p4est] 02/04: Merge tag 'upstream/1.1+git20161115'
Matthias Maier
tamiko-guest at moszumanska.debian.org
Tue Nov 15 21:06:25 UTC 2016
This is an automated email from the git hooks/post-receive script.
tamiko-guest pushed a commit to branch master
in repository p4est.
commit 23eeeaf51be4f6d11d0ea8e18bcbdff4a066bf20
Merge: 99f006c 6fd5c2e
Author: Matthias Maier <tamiko+DEBIAN at kyomu.43-1.org>
Date: Tue Nov 15 20:27:53 2016 +0000
Merge tag 'upstream/1.1+git20161115'
Upstream version 1.1+git20161115
.gitmodules | 1 -
AUTHORS | 6 +
Doxyfile.in | 6 +-
Makefile.am | 2 +-
README | 45 +-
...e-c27b6579bbf507787146bd88e1b2c4f998a9ea07.yaml | 42 +
build-aux/git-version-gen | 2 +-
config/p4est_petsc.m4 | 87 +-
configure.ac | 4 +-
doc/FREEBSD | 23 +
doc/announce/nadv14no37.txt | 36 +
doc/attic/p8est_trilinear.c | 1 +
doc/attic/p8est_trilinear.h | 1 +
doc/attic/p8est_trilinear_lnodes.c | 1 +
doc/attic/p8est_trilinear_nodes.c | 1 +
doc/author_lahnert.txt | 1 +
doc/mainpage.dox | 9 +-
doc/morton/morton.py | 237 +++
doc/octreemap.pdf | Bin 0 -> 101014 bytes
doc/p4est-howto.pdf | Bin 0 -> 474947 bytes
doc/p4est_license_approval.pdf | Bin 0 -> 58924 bytes
doc/webpage/index.html | 107 +-
example/balance_seeds/balance_seeds2.c | 27 +-
example/balance_seeds/balance_seeds3.c | 1 +
example/mesh/mesh2.c | 86 +-
example/mesh/mesh3.c | 1 +
example/mesh/periodicity3.c | 1 +
example/p6est/Makefile.am | 25 -
example/p6est/p6est_io.c | 0
example/p6est/p6est_io.h | 0
example/points/points2.c | 1 +
example/points/points3.c | 1 +
example/simple/simple2.c | 1 +
example/simple/simple3.c | 1 +
example/steps/p4est_step1.c | 1 +
example/steps/p4est_step2.c | 1 +
example/steps/p4est_step3.c | 61 +-
example/steps/p4est_step4.c | 5 +-
example/steps/p8est_step1.c | 1 +
example/steps/p8est_step2.c | 1 +
example/steps/p8est_step3.c | 1 +
example/steps/p8est_step4.c | 1 +
example/tetgen/read_conn2.c | 4 +-
example/tetgen/read_conn3.c | 4 +-
example/tetgen/read_tetgen.c | 1 +
example/tetgen/write_conn2.c | 4 +-
example/tetgen/write_conn3.c | 4 +-
example/timings/bricks2.c | 1 +
example/timings/bricks3.c | 1 +
example/timings/loadconn2.c | 1 +
example/timings/loadconn3.c | 1 +
example/timings/timings2.c | 23 +-
example/timings/timings3.c | 1 +
example/timings/tsearch3.c | 13 +-
sc/AUTHORS | 10 +
sc/Doxyfile.in | 2 +-
sc/Makefile.am | 8 +-
sc/README | 12 +-
sc/config/sc_include.m4 | 2 +
sc/config/sc_memalign.m4 | 96 ++
sc/config/sc_mpi.m4 | 63 +
sc/config/sc_openmp.m4 | 49 +
sc/config/sc_pthread.m4 | 5 +
sc/configure.ac | 34 +-
sc/doc/FREEBSD | 23 +
sc/doc/author_kestener.txt | 1 +
sc/doc/sc_license_approval.pdf | Bin 0 -> 44626 bytes
sc/doc/v1.2.branches | 32 +
sc/example/bspline/bspline.c | 1 +
sc/example/bspline/bspline_per.c | 1 +
sc/example/dmatrix/dmatrix.c | 1 +
sc/example/function/function.c | 1 +
sc/example/logging/logging.c | 1 +
sc/example/openmp/Makefile.am | 13 +
sc/example/openmp/config_with_omp.txt | 11 +
sc/example/openmp/juqueen_job.js | 26 +
sc/example/openmp/openmp.c | 42 +
sc/example/options/Makefile.am | 7 +-
sc/example/options/logging.c | 89 ++
sc/example/options/options.c | 24 +-
.../{options.ini => sc_options_example.ini} | 0
.../{preload.ini => sc_options_preload.ini} | 0
sc/example/pthread/condvar.c | 1 +
sc/example/pthread/pthread.c | 3 +-
sc/example/testing/Makefile.am | 9 +
sc/example/testing/sc_test_shmem.c | 324 ++++
sc/example/warp/warp.c | 1 +
sc/iniparser/Makefile.am | 2 +-
.../{twisted.ini => sc_iniparser_twisted.ini} | 0
sc/src/Makefile.am | 6 +-
sc/src/sc.c | 391 ++++-
sc/src/sc.h | 121 +-
sc/src/sc_allgather.c | 1 +
sc/src/sc_allgather.h | 1 +
sc/src/sc_amr.c | 1 +
sc/src/sc_amr.h | 1 +
sc/src/sc_blas.c | 3 +-
sc/src/sc_blas.h | 16 +-
sc/src/sc_bspline.c | 1 +
sc/src/sc_bspline.h | 1 +
sc/src/sc_containers.c | 93 +-
sc/src/sc_containers.h | 107 +-
sc/src/sc_dmatrix.c | 170 ++-
sc/src/sc_dmatrix.h | 236 ++-
sc/src/sc_flops.c | 1 +
sc/src/sc_flops.h | 1 +
sc/src/sc_functions.c | 55 +
sc/src/sc_functions.h | 30 +
sc/src/sc_getopt.h | 1 +
sc/src/sc_io.c | 89 +-
sc/src/sc_io.h | 37 +-
sc/src/sc_keyvalue.c | 40 +
sc/src/sc_keyvalue.h | 154 +-
sc/src/sc_lapack.c | 3 +-
sc/src/sc_lapack.h | 25 +-
sc/src/sc_lua.h | 1 +
sc/src/sc_mpi.c | 383 ++++-
sc/src/sc_mpi.h | 121 +-
sc/src/sc_notify.c | 1 +
sc/src/sc_notify.h | 1 +
sc/src/sc_obstack.h | 1 +
sc/src/sc_options.c | 257 +++-
sc/src/sc_options.h | 233 +--
sc/src/{sc_sort.h => sc_private.h} | 32 +-
sc/src/sc_ranges.c | 1 +
sc/src/sc_ranges.h | 1 +
sc/src/sc_reduce.c | 1 +
sc/src/sc_reduce.h | 1 +
sc/src/sc_refcount.c | 110 ++
sc/src/sc_refcount.h | 120 ++
sc/src/sc_search.c | 3 +-
sc/src/sc_search.h | 1 +
sc/src/sc_shmem.c | 928 ++++++++++++
sc/src/sc_shmem.h | 169 +++
sc/src/sc_sort.c | 1 +
sc/src/sc_sort.h | 1 +
sc/src/sc_statistics.c | 9 +
sc/src/sc_statistics.h | 4 +
sc/src/sc_string.c | 102 ++
sc/src/sc_string.h | 107 ++
sc/src/sc_unique_counter.c | 77 +
sc/src/sc_unique_counter.h | 76 +
sc/src/sc_warp.c | 1 +
sc/src/sc_warp.h | 1 +
sc/test/Makefile.am | 5 +
sc/test/test_allgather.c | 1 +
sc/test/test_arrays.c | 5 +
sc/test/test_builtin.c | 1 +
sc/test/test_darray_work.c | 81 +
sc/test/test_dmatrix.c | 203 ++-
sc/test/test_dmatrix_pool.c | 1 +
sc/test/test_io_sink.c | 3 +-
sc/test/test_keyvalue.c | 1 +
sc/test/test_node_comm.c | 147 ++
sc/test/test_notify.c | 1 +
sc/test/test_pqueue.c | 1 +
sc/test/test_reduce.c | 1 +
sc/test/test_search.c | 1 +
sc/test/test_sort.c | 1 +
sc/test/test_sortb.c | 1 +
src/Makefile.am | 17 +-
src/p4est.c | 306 ++--
src/p4est.h | 44 +-
src/p4est_algorithms.c | 583 +++----
src/p4est_algorithms.h | 7 +
src/p4est_balance.c | 3 +-
src/p4est_balance.h | 3 +-
src/p4est_base.c | 1 +
src/p4est_base.h | 44 +-
src/p4est_bits.c | 24 +
src/p4est_bits.h | 10 +
src/p4est_communication.c | 287 +++-
src/p4est_communication.h | 108 +-
src/p4est_connectivity.c | 620 ++++++--
src/p4est_connectivity.h | 46 +-
src/p4est_connrefine.c | 179 +++
src/p4est_extended.h | 91 ++
src/p4est_geometry.c | 1 +
src/p4est_geometry.h | 4 +-
src/p4est_ghost.c | 286 +++-
src/p4est_ghost.h | 86 +-
src/p4est_io.c | 22 +-
src/p4est_io.h | 5 +-
src/p4est_iterate.c | 1 +
src/p4est_iterate.h | 5 +-
src/p4est_lnodes.c | 250 ++-
src/p4est_lnodes.h | 28 +-
src/p4est_mesh.c | 106 +-
src/p4est_mesh.h | 3 +-
src/p4est_nodes.c | 1 +
src/p4est_nodes.h | 1 +
src/p4est_plex.c | 660 ++++++--
src/p4est_plex.h | 1 +
src/p4est_points.c | 7 +-
src/p4est_points.h | 1 +
src/p4est_search.c | 176 ++-
src/p4est_search.h | 68 +-
src/p4est_to_p8est.h | 86 +-
src/p4est_vtk.c | 1591 ++++++++++++++------
src/p4est_vtk.h | 305 ++--
src/p4est_wrap.c | 492 +++++-
src/p4est_wrap.h | 201 ++-
{example/p6est => src}/p6est.c | 470 +++++-
{example/p6est => src}/p6est.h | 36 +-
src/p6est_communication.c | 196 +++
src/p6est_communication.h | 114 ++
{example/p6est => src}/p6est_extended.h | 30 +-
{example/p6est => src}/p6est_ghost.c | 3 +-
{example/p6est => src}/p6est_ghost.h | 9 +-
{example/p6est => src}/p6est_lnodes.c | 82 +-
{example/p6est => src}/p6est_lnodes.h | 15 +-
{example/p6est => src}/p6est_profile.c | 42 +-
{example/p6est => src}/p6est_profile.h | 9 +-
{example/p6est => src}/p6est_vtk.c | 3 +-
{example/p6est => src}/p6est_vtk.h | 3 +-
src/p8est.c | 1 +
src/p8est.h | 38 +-
src/p8est_algorithms.c | 1 +
src/p8est_algorithms.h | 7 +
src/p8est_balance.c | 3 +-
src/p8est_balance.h | 3 +-
src/p8est_bits.c | 1 +
src/p8est_bits.h | 10 +
src/p8est_communication.c | 1 +
src/p8est_communication.h | 108 +-
src/p8est_connectivity.c | 200 ++-
src/p8est_connectivity.h | 102 +-
.../timings/bricks3.c => src/p8est_connrefine.c | 3 +-
src/p8est_extended.h | 91 ++
src/p8est_geometry.c | 1 +
src/p8est_geometry.h | 4 +-
src/p8est_ghost.c | 1 +
src/p8est_ghost.h | 88 +-
src/p8est_io.c | 2 +-
src/p8est_io.h | 5 +-
src/p8est_iterate.c | 1 +
src/p8est_iterate.h | 7 +-
src/p8est_lnodes.c | 1 +
src/p8est_lnodes.h | 31 +-
src/p8est_mesh.c | 1 +
src/p8est_mesh.h | 5 +-
src/p8est_nodes.c | 1 +
src/p8est_nodes.h | 1 +
src/p8est_plex.c | 1 +
src/p8est_plex.h | 1 +
src/p8est_points.c | 1 +
src/p8est_points.h | 1 +
src/p8est_search.c | 1 +
src/p8est_search.h | 107 +-
src/p8est_tets_hexes.c | 1 +
src/p8est_tets_hexes.h | 1 +
src/p8est_vtk.c | 1 +
src/p8est_vtk.h | 310 ++--
src/p8est_wrap.c | 4 +-
src/p8est_wrap.h | 206 ++-
test/Makefile.am | 76 +-
example/p6est/test/test_all.c => test/test_all6.c | 12 +-
test/test_balance2.c | 1 +
test/test_balance3.c | 1 +
test/test_balance_seeds2.c | 3 +-
test/test_balance_seeds3.c | 5 +-
test/test_balance_type2.c | 1 +
test/test_balance_type3.c | 1 +
test/test_brick2.c | 1 +
test/test_brick3.c | 1 +
test/test_coarsen2.c | 1 +
test/test_coarsen3.c | 1 +
test/test_comm.c | 1 +
test/test_complete_subtree.c | 165 ++
test/test_conn_complete2.c | 1 +
test/test_conn_complete3.c | 1 +
test/test_conn_reduce2.c | 1 +
test/test_conn_reduce3.c | 1 +
test/test_conn_transformation2.c | 218 +++
.../bricks3.c => test/test_conn_transformation3.c | 3 +-
test/{test_join2.c => test_connrefine2.c} | 29 +-
.../timings/bricks3.c => test/test_connrefine3.c | 3 +-
test/test_edge_face_corners3.c | 1 +
test/test_face_transform3.c | 1 +
test/test_ghost2.c | 68 +
test/test_ghost3.c | 1 +
test/test_hash.c | 1 +
test/test_iterate2.c | 3 +-
test/test_iterate3.c | 3 +-
test/test_join2.c | 14 +-
test/test_join3.c | 3 +-
test/test_lnodes2.c | 3 +-
test/test_lnodes3.c | 3 +-
test/test_load2.c | 109 ++
example/timings/bricks3.c => test/test_load3.c | 3 +-
test/test_loadsave2.c | 1 +
test/test_loadsave3.c | 1 +
test/test_order.c | 1 +
test/test_partition2.c | 17 +-
test/test_partition3.c | 1 +
test/test_partition_corr2.c | 1 +
test/test_partition_corr3.c | 1 +
test/test_periodic3.c | 49 +-
test/test_plex2.c | 131 +-
test/test_plex3.c | 3 +-
test/test_quadrants2.c | 1 +
test/test_quadrants3.c | 1 +
test/test_reorder2.c | 3 +-
test/test_reorder3.c | 3 +-
test/test_replace2.c | 3 +-
test/test_replace3.c | 3 +-
test/test_search2.c | 31 +-
test/test_search3.c | 1 +
test/test_subcomm2.c | 291 ++++
example/timings/bricks3.c => test/test_subcomm3.c | 3 +-
test/test_valid2.c | 29 +-
test/test_valid3.c | 1 +
test/test_wrap2.c | 65 +-
test/test_wrap3.c | 4 +-
314 files changed, 14550 insertions(+), 2524 deletions(-)
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