[python-escript] branch debian updated (cd41cea -> f4e5403)
Joel Fenwick
jfenwick-guest at moszumanska.debian.org
Wed Sep 21 02:17:30 UTC 2016
This is an automated email from the git hooks/post-receive script.
jfenwick-guest pushed a change to branch debian
in repository python-escript.
from cd41cea Update changelog.
new f4e5403 Bring up to date with upstream 5.0
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CREDITS.txt => CREDITS | 5 +-
README_LICENSE => LICENSE | 0
README | 11 +
SConstruct | 477 +-
debian/changelog | 6 +
debian/patches/10_use_python35.patch | 35 -
debian/patches/11_use_c++03 | 11 -
debian/patches/13_cpp_overlord | 84 -
debian/patches/series | 3 -
doc/SConscript | 2 -
doc/docguide.tex | 3 +-
doc/doxygen/doxygen_esys | 3 +-
doc/examples/SConscript | 47 +-
doc/examples/cookbook/example01a.py | 1 +
doc/examples/cookbook/example03b.py | 1 +
doc/examples/cookbook/example08a.py | 2 +-
doc/examples/cookbook/example08b.py | 2 +-
doc/examples/cookbook/example09a.py | 2 +-
doc/examples/cookbook/example10m.py | 23 +-
doc/examples/inversion/grav_ermapper.py | 15 +-
doc/examples/inversion/grav_netcdf.py | 21 +-
doc/examples/inversion/gravmag_netcdf.py | 19 +-
doc/examples/inversion/gravmag_nodriver.py | 3 -
doc/examples/inversion/mag_netcdf.py | 20 +-
doc/examples/inversion/synthetic_HTI.py | 347 +-
doc/examples/inversion/synthetic_TTI.py | 263 +-
doc/examples/inversion/synthetic_VTI.py | 293 +-
doc/examples/inversion/synthetic_sonic.py | 228 +-
doc/examples/inversion/synthetic_sonicHTI.py | 305 +-
doc/examples/inversion/test_commemi1.py | 196 +-
doc/examples/inversion/test_commemi4.py | 245 +-
doc/examples/usersguide/voxet_reader.py | 50 +-
doc/examples/usersguide/wave.py | 1 +
doc/install/cxx11.tex | 14 +
doc/install/install.tex | 2 +-
doc/install/intro.tex | 21 +-
doc/install/source.tex | 97 +-
doc/user/changes.tex | 22 +-
doc/user/esys.bib | 11 -
doc/user/linearPDE.tex | 11 +-
doc/user/subworlds.tex | 2 +-
doc/verinfo.tex | 4 +-
downunder/py_src/coordinates.py | 22 +-
downunder/py_src/forwardmodels/acoustic.py | 6 +-
downunder/py_src/magtel2d.py | 2 +-
downunder/py_src/seismic.py | 6 +-
downunder/test/python/SConscript | 5 +-
downunder/test/python/run_comm1.py | 35 +-
downunder/test/python/run_comm4.py | 12 +-
downunder/test/python/run_datasources.py | 7 +-
downunder/test/python/run_dcforward.py | 2 +-
downunder/test/python/run_forward.py | 76 +-
downunder/test/python/run_inversion_gravmag_2d.py | 4 +-
{paso/profiling => dudley}/SConscript | 22 +-
dudley/py_src/SConscript | 8 +-
dudley/py_src/__init__.py | 1 -
dudley/py_src/factorywrappers.py | 73 +-
dudley/py_src/readers.py | 7 +-
dudley/src/Assemble.h | 235 +-
dudley/src/Assemble_AverageElementData.cpp | 174 +-
dudley/src/Assemble_CopyElementData.cpp | 125 +-
dudley/src/Assemble_CopyNodalData.cpp | 505 +-
dudley/src/Assemble_LumpedSystem.cpp | 615 +-
dudley/src/Assemble_NodeCoordinates.cpp | 74 +-
dudley/src/Assemble_PDE.cpp | 561 +-
dudley/src/Assemble_PDE_Points.cpp | 117 +-
dudley/src/Assemble_PDE_Single2_1D.cpp | 356 -
dudley/src/Assemble_PDE_Single2_2D.cpp | 393 -
dudley/src/Assemble_PDE_Single2_3D.cpp | 428 -
dudley/src/Assemble_PDE_Single_2D.cpp | 321 +
dudley/src/Assemble_PDE_Single_3D.cpp | 365 +
dudley/src/Assemble_PDE_System2_1D.cpp | 423 -
dudley/src/Assemble_PDE_System2_2D.cpp | 461 --
dudley/src/Assemble_PDE_System2_3D.cpp | 504 --
dudley/src/Assemble_PDE_System_2D.cpp | 374 +
dudley/src/Assemble_PDE_System_3D.cpp | 427 +
dudley/src/Assemble_addToSystemMatrix.cpp | 545 +-
dudley/src/Assemble_getAssembleParameters.cpp | 249 +-
dudley/src/Assemble_getNormal.cpp | 83 +
dudley/src/Assemble_getSize.cpp | 157 +-
dudley/src/Assemble_gradient.cpp | 640 +-
dudley/src/Assemble_integrate.cpp | 146 +-
dudley/src/Assemble_interpolate.cpp | 188 +-
dudley/src/Assemble_jacobeans.cpp | 363 -
dudley/src/Assemble_jacobians.cpp | 317 +
dudley/src/Assemble_setNormal.cpp | 123 -
dudley/src/CPPAdapter/DudleyAdapterException.cpp | 34 -
dudley/src/CPPAdapter/DudleyAdapterException.h | 106 -
dudley/src/CPPAdapter/DudleyError.cpp | 54 -
dudley/src/CPPAdapter/DudleyError.h | 51 -
dudley/src/CPPAdapter/MeshAdapter.cpp | 2043 -----
dudley/src/CPPAdapter/MeshAdapter.h | 671 --
dudley/src/CPPAdapter/MeshAdapterFactory.cpp | 714 --
dudley/src/CPPAdapter/MeshAdapterFactory.h | 168 -
dudley/src/DomainFactory.cpp | 473 ++
dudley/src/DomainFactory.h | 125 +
dudley/src/Dudley.cpp | 79 -
dudley/src/Dudley.h | 66 +-
dudley/src/DudleyDomain.cpp | 1733 ++++
dudley/src/DudleyDomain.h | 743 ++
.../DudleyException.h} | 17 +-
dudley/src/DudleyVersion.h | 3 +-
dudley/src/ElementFile.cpp | 338 +-
dudley/src/ElementFile.h | 255 +-
dudley/src/ElementFile_allocTable.cpp | 119 -
dudley/src/ElementFile_copyTable.cpp | 61 -
dudley/src/ElementFile_createColoring.cpp | 146 +-
dudley/src/ElementFile_distributeByRankOfDOF.cpp | 383 +-
dudley/src/ElementFile_gather.cpp | 57 -
dudley/src/ElementFile_jacobeans.cpp | 162 -
dudley/src/ElementFile_jacobians.cpp | 94 +
dudley/src/ElementFile_markNodes.cpp | 82 -
dudley/src/ElementFile_optimizeOrdering.cpp | 80 -
dudley/src/ElementFile_relableNodes.cpp | 50 -
dudley/src/ElementFile_scatter.cpp | 57 -
dudley/src/ElementFile_setCoordinates.cpp | 37 -
dudley/src/ElementFile_setNodeRange.cpp | 46 -
dudley/src/ElementFile_setTags.cpp | 90 -
dudley/src/ElementType.cpp | 52 -
dudley/src/ElementType.h | 38 +-
dudley/src/IndexList.cpp | 154 +-
dudley/src/IndexList.h | 42 +-
dudley/src/Mesh.cpp | 163 -
dudley/src/Mesh.h | 166 -
dudley/src/Mesh_createNodeFileMappings.cpp | 523 --
dudley/src/Mesh_distributeByRankOfDOF.cpp | 153 +-
dudley/src/Mesh_findMatchingFaces.cpp | 262 -
dudley/src/Mesh_getPattern.cpp | 175 +-
dudley/src/Mesh_markNodes.cpp | 57 -
dudley/src/Mesh_optimizeDOFDistribution.cpp | 381 +-
dudley/src/Mesh_optimizeDOFLabeling.cpp | 168 +-
dudley/src/Mesh_prepare.cpp | 164 -
dudley/src/Mesh_print.cpp | 125 -
dudley/src/Mesh_read.cpp | 911 +--
dudley/src/Mesh_readGmsh.cpp | 663 +-
dudley/src/Mesh_relableElementNodes.cpp | 39 -
dudley/src/Mesh_resolveNodeIds.cpp | 166 +-
dudley/src/Mesh_setCoordinates.cpp | 34 -
dudley/src/Mesh_tagmaps.cpp | 43 -
dudley/src/Mesh_tet4.cpp | 1134 ++-
dudley/src/Mesh_tri3.cpp | 494 +-
dudley/src/Mesh_write.cpp | 412 +-
dudley/src/NodeFile.cpp | 407 +-
dudley/src/NodeFile.h | 340 +-
dudley/src/NodeFile_allocTable.cpp | 158 -
dudley/src/NodeFile_copyTable.cpp | 57 -
dudley/src/NodeFile_createDenseLabelings.cpp | 735 +-
dudley/src/NodeFile_createMappings.cpp | 253 +
dudley/src/NodeFile_createTrilinosGraph.cpp | 78 +
dudley/src/NodeFile_gather.cpp | 313 +-
dudley/src/NodeFile_scatter.cpp | 66 -
dudley/src/NodeFile_setCoordinates.cpp | 62 -
dudley/src/NodeFile_setIdRange.cpp | 227 -
dudley/src/NodeFile_setTags.cpp | 73 -
dudley/src/NodeMapping.cpp | 99 -
dudley/src/NodeMapping.h | 107 +-
dudley/src/SConscript | 228 +-
dudley/src/ShapeTable.cpp | 199 +-
dudley/src/ShapeTable.h | 78 +-
dudley/src/TagMap.cpp | 125 -
dudley/src/TagMap.h | 38 -
dudley/src/TriangularMesh.h | 35 -
dudley/src/Util.cpp | 878 +--
dudley/src/Util.h | 107 +-
dudley/src/dudleycpp.cpp | 191 +
...dapterTestCase.cpp => DudleyDomainTestCase.cpp} | 28 +-
.../test/DudleyDomainTestCase.h | 8 +-
dudley/test/SConscript | 13 +-
dudley/test/dudley_UnitTests.cpp | 11 +-
dudley/test/python/FCT_benchmark.py | 0
dudley/test/python/SConscript | 58 +-
dudley/test/python/axisymm-splitB.py | 0
dudley/test/python/blocktest.py | 0
dudley/test/python/data_meshes/brick_8x10x12.fly | 1 +
dudley/test/python/data_meshes/rectangle_8x10.fly | 1 +
dudley/test/python/data_meshes/tagtest2.fly | 1 +
dudley/test/python/data_meshes/tet10.fly | 1 +
dudley/test/python/data_meshes/tet4.fly | 1 +
dudley/test/python/data_meshes/tet_2D_order1.fly | 1 +
dudley/test/python/data_meshes/tet_3D_order1.fly | 3 +-
dudley/test/python/data_meshes/tri3.fly | 1 +
dudley/test/python/linearElastic.py | 0
dudley/test/python/run_escriptOnDudley.py | 47 +-
dudley/test/python/run_inputOutput.py | 26 +-
dudley/test/python/run_linearPDEsOnDudley1.py | 75 +-
dudley/test/python/run_linearPDEsOnDudley2.py | 72 +-
dudley/test/python/run_models.py | 124 +-
dudley/test/python/run_nlpde2dOnDudley.py | 55 -
dudley/test/python/run_nlpde3dOnDudley.py | 55 -
.../test/python/run_nonlinearPDEsOnDudley.py | 30 +-
dudley/test/python/run_pasoSolversOnDudley.py | 316 +
dudley/test/python/run_simplesolve.py | 550 --
dudley/test/python/run_splitworldOnDudley.py | 16 +-
dudley/test/python/run_trilinosSolversOnDudley.py | 344 +
dudley/test/python/run_utilOnDudley.py | 36 +-
escript/py_src/SConscript | 8 +-
escript/py_src/__init__.py | 3 +-
.../SConscript | 17 +-
escriptcore/py_src/SConscript | 6 +-
escriptcore/py_src/faultsystems.py | 4 +-
escriptcore/py_src/flows.py | 2 +-
escriptcore/py_src/gmshrunner.py | 6 +-
escriptcore/py_src/linearPDEs.py | 158 +-
escriptcore/py_src/nonlinearPDE.py | 19 +-
escriptcore/py_src/pdetools.py | 10 +-
escriptcore/py_src/util.py | 372 +-
escriptcore/src/AbstractContinuousDomain.cpp | 11 +-
escriptcore/src/AbstractContinuousDomain.h | 22 +-
escriptcore/src/AbstractDomain.cpp | 4 -
escriptcore/src/AbstractDomain.h | 18 +-
escriptcore/src/AbstractReducer.cpp | 15 +-
escriptcore/src/AbstractReducer.h | 94 +-
escriptcore/src/AbstractSystemMatrix.cpp | 33 +-
escriptcore/src/AbstractSystemMatrix.h | 27 +-
escriptcore/src/AbstractTransportProblem.cpp | 124 +-
escriptcore/src/AbstractTransportProblem.h | 32 +-
escriptcore/src/ArrayOps.cpp | 70 +
escriptcore/src/ArrayOps.h | 892 +++
escriptcore/src/Assert.h | 83 +
escriptcore/src/BinaryDataReadyOps.cpp | 873 ++
escriptcore/src/BinaryDataReadyOps.h | 59 +
escriptcore/src/BinaryOp.h | 206 -
escriptcore/src/Data.cpp | 3185 ++++++--
escriptcore/src/Data.h | 1920 ++---
escriptcore/src/DataAbstract.cpp | 132 +-
escriptcore/src/DataAbstract.h | 207 +-
escriptcore/src/DataAlgorithm.h | 339 -
escriptcore/src/DataBlocks2D.cpp | 92 -
escriptcore/src/DataBlocks2D.h | 337 -
escriptcore/src/DataC.cpp | 174 -
escriptcore/src/DataC.h | 172 -
escriptcore/src/DataConstant.cpp | 443 +-
escriptcore/src/DataConstant.h | 104 +-
escriptcore/src/DataEmpty.cpp | 68 +-
escriptcore/src/DataEmpty.h | 50 +-
escriptcore/src/DataException.cpp | 30 -
escriptcore/src/DataException.h | 86 +-
escriptcore/src/DataExpanded.cpp | 894 ++-
escriptcore/src/DataExpanded.h | 130 +-
escriptcore/src/DataFactory.cpp | 649 +-
escriptcore/src/DataLazy.cpp | 1757 ++---
escriptcore/src/DataLazy.h | 100 +-
escriptcore/src/DataMaths.cpp | 340 -
escriptcore/src/DataMaths.h | 952 ---
escriptcore/src/DataReady.cpp | 14 +-
escriptcore/src/DataReady.h | 129 +-
escriptcore/src/DataTagged.cpp | 966 ++-
escriptcore/src/DataTagged.h | 226 +-
escriptcore/src/DataTypes.cpp | 464 +-
escriptcore/src/DataTypes.h | 240 +-
escriptcore/src/DataVector.cpp | 623 +-
escriptcore/src/DataVector.h | 566 +-
escriptcore/src/DataVectorAlt.cpp | 113 +
escriptcore/src/DataVectorAlt.h | 485 ++
escriptcore/src/DataVectorOps.cpp | 999 +++
escriptcore/src/DataVectorOps.h | 1452 ++++
.../src/{DataVector.cpp => DataVectorTaipan.cpp} | 82 +-
.../src/{DataVector.h => DataVectorTaipan.h} | 116 +-
escriptcore/src/Distribution.h | 79 +
escriptcore/src/DomainException.cpp | 32 -
escriptcore/src/DomainException.h | 84 +-
escriptcore/src/ES_optype.cpp | 80 +
escriptcore/src/ES_optype.h | 108 +
escriptcore/src/EscriptParams.cpp | 308 +-
escriptcore/src/EscriptParams.h | 139 +-
escriptcore/src/EsysException.h | 97 +
escriptcore/src/EsysMPI.cpp | 242 +
escriptcore/src/EsysMPI.h | 202 +
.../src/ExceptionTranslators.cpp | 36 +-
escriptcore/src/ExceptionTranslators.h | 66 +
.../src/FileWriter.h | 20 +-
escriptcore/src/FunctionSpace.cpp | 42 +-
escriptcore/src/FunctionSpace.h | 16 +-
escriptcore/src/FunctionSpaceException.cpp | 34 -
escriptcore/src/FunctionSpaceException.h | 83 +-
escriptcore/src/FunctionSpaceFactory.cpp | 4 -
escriptcore/src/FunctionSpaceFactory.h | 9 +-
{esysUtils => escriptcore}/src/IndexList.h | 47 +-
escriptcore/src/LapackInverseHelper.cpp | 12 +-
escriptcore/src/LocalOps.h | 563 --
escriptcore/src/MPIDataReducer.cpp | 546 +-
escriptcore/src/MPIDataReducer.h | 27 +-
escriptcore/src/MPIScalarReducer.cpp | 189 +-
escriptcore/src/MPIScalarReducer.h | 38 +-
escriptcore/src/NonReducedVariable.cpp | 18 +-
escriptcore/src/NonReducedVariable.h | 37 +-
escriptcore/src/NullDomain.cpp | 22 +-
escriptcore/src/NullDomain.h | 12 +-
escriptcore/src/Pointers.h | 9 +-
escriptcore/src/Random.cpp | 244 +
.../src/EsysRandom.h => escriptcore/src/Random.h | 20 +-
escriptcore/src/SConscript | 125 +-
escriptcore/src/SolverOptions.cpp | 204 +-
escriptcore/src/SolverOptions.h | 82 +-
escriptcore/src/SolverOptionsException.cpp | 28 -
escriptcore/src/SolverOptionsException.h | 91 -
escriptcore/src/SplitWorld.cpp | 51 +-
escriptcore/src/SplitWorld.h | 15 +-
escriptcore/src/SplitWorldException.cpp | 34 -
escriptcore/src/SplitWorldException.h | 84 +-
escriptcore/src/SubWorld.cpp | 1272 ++-
escriptcore/src/SubWorld.h | 80 +-
escriptcore/src/SystemMatrixException.cpp | 32 -
escriptcore/src/SystemMatrixException.h | 73 +-
escriptcore/src/TestDomain.cpp | 131 +-
escriptcore/src/TestDomain.h | 33 +-
escriptcore/src/TransportProblemException.cpp | 34 -
escriptcore/src/TransportProblemException.h | 80 +-
escriptcore/src/UnaryFuncs.h | 167 -
escriptcore/src/UnaryOp.h | 87 -
escriptcore/src/UtilC.h | 25 -
escriptcore/src/Utils.cpp | 83 +-
escriptcore/src/WrappedArray.cpp | 296 +-
escriptcore/src/WrappedArray.h | 142 +-
escriptcore/src/escriptcpp.cpp | 140 +-
.../system_dep.h => escriptcore/src/index.h | 31 +-
escriptcore/src/pyerr.cpp | 75 +
{esysUtils => escriptcore}/src/pyerr.h | 19 +-
escriptcore/src/system_dep.h | 45 +-
escriptcore/test/DataAlgorithmAdapterTestCase.cpp | 273 -
escriptcore/test/DataBlocks2DTestCase.cpp | 215 -
escriptcore/test/DataCombinationsTestCase.cpp | 876 ++
...dapterTestCase.h => DataCombinationsTestCase.h} | 18 +-
escriptcore/test/DataConstantTestCase.cpp | 15 +-
escriptcore/test/DataEmptyTestCase.cpp | 10 +-
escriptcore/test/DataExpandedTestCase.cpp | 40 +-
escriptcore/test/DataFactoryTestCase.cpp | 7 +-
escriptcore/test/DataLazyTestCase.cpp | 28 +-
escriptcore/test/DataMathsTestCase.cpp | 461 +-
escriptcore/test/DataTaggedTestCase.cpp | 1826 +----
escriptcore/test/DataTestCase.cpp | 518 +-
escriptcore/test/DataTestCase.h | 2 +-
escriptcore/test/DataTypesTestCase.cpp | 112 +-
escriptcore/test/DataVectorTestCase.cpp | 42 +-
escriptcore/test/EsysExceptionTestCase.cpp | 165 +
.../test/EsysExceptionTestCase.h | 1 -
.../test/FileWriterTestCase.cpp | 36 +-
.../test/FileWriterTestCase.h | 6 +-
escriptcore/test/FunctionSpaceTestCase.cpp | 17 +-
escriptcore/test/SConscript | 12 +-
escriptcore/test/SharedDataTestCase.cpp | 50 +-
escriptcore/test/TaipanTestCase.cpp | 8 +-
escriptcore/test/escript_UnitTest.cpp | 36 +-
escriptcore/test/multi_arrayTestCase.cpp | 4 +-
escriptcore/test/python/SConscript | 8 +-
escriptcore/test/python/run_symbolic.py | 13 +-
escriptcore/test/python/run_testdomain.py | 1 +
escriptcore/test/python/test_linearPDEs.py | 563 +-
escriptcore/test/python/test_nonLinearPDE.py | 11 +-
escriptcore/test/python/test_objects.py | 23 +-
escriptcore/test/python/test_pdetools.py | 141 +-
escriptcore/test/python/test_simplesolve.py | 169 +
escriptcore/test/python/test_splitworld.py | 34 +-
escriptcore/test/python/test_symfuncs.py | 1 +
escriptcore/test/python/test_util_NaN_funcs.py | 21 +
.../test/python/test_util_binary_no_tagged_data.py | 1088 ++-
.../python/test_util_binary_with_tagged_data.py | 810 ++
.../python/test_util_slicing_no_tagged_data.py | 34 +
.../test/python/test_util_spatial_functions1.py | 594 +-
.../test/python/test_util_spatial_functions2.py | 1 +
.../test/python/test_util_spatial_functions3.py | 2 +-
.../test/python/test_util_unary_no_tagged_data.py | 72 +-
.../python/test_util_unary_with_tagged_data.py | 31 +-
esysUtils/src/EsysAssert.h | 100 -
esysUtils/src/EsysAssertException.cpp | 52 -
esysUtils/src/EsysAssertException.h | 118 -
esysUtils/src/EsysException.cpp | 77 -
esysUtils/src/EsysException.h | 209 -
esysUtils/src/EsysRandom.cpp | 241 -
esysUtils/src/Esys_MPI.cpp | 387 -
esysUtils/src/Esys_MPI.h | 166 -
esysUtils/src/SConscript | 72 -
esysUtils/src/blocktimer.cpp | 189 -
esysUtils/src/blocktimer.h | 44 -
esysUtils/src/error.cpp | 93 -
esysUtils/src/error.h | 94 -
esysUtils/src/esysExceptionTranslator.h | 44 -
esysUtils/src/first.h | 26 -
esysUtils/src/index.h | 63 -
esysUtils/src/maths.h | 30 -
esysUtils/src/mem.h | 100 -
esysUtils/src/pyerr.cpp | 78 -
esysUtils/src/system_dep.h | 58 -
esysUtils/src/types.h | 32 -
esysUtils/test/EsysExceptionTestCase.cpp | 296 -
esysUtils/test/SConscript | 40 -
esysUtils/test/esysUtils_UnitTest.cpp | 53 -
{pasowrap/py_src => finley}/SConscript | 24 +-
finley/py_src/SConscript | 4 +-
finley/py_src/__init__.py | 2 -
finley/src/Assemble.h | 74 +-
finley/src/Assemble_AverageElementData.cpp | 15 +-
finley/src/Assemble_CopyElementData.cpp | 13 +-
finley/src/Assemble_CopyNodalData.cpp | 309 +-
finley/src/Assemble_LumpedSystem.cpp | 262 +-
finley/src/Assemble_NodeCoordinates.cpp | 26 +-
finley/src/Assemble_PDE.cpp | 145 +-
finley/src/Assemble_PDE_Points.cpp | 47 +-
finley/src/Assemble_PDE_Single_1D.cpp | 87 +-
finley/src/Assemble_PDE_Single_2D.cpp | 278 +-
finley/src/Assemble_PDE_Single_3D.cpp | 334 +-
finley/src/Assemble_PDE_Single_C.cpp | 126 +-
finley/src/Assemble_PDE_System_1D.cpp | 32 +-
finley/src/Assemble_PDE_System_2D.cpp | 344 +-
finley/src/Assemble_PDE_System_3D.cpp | 402 +-
finley/src/Assemble_PDE_System_C.cpp | 132 +-
finley/src/Assemble_addToSystemMatrix.cpp | 379 +-
finley/src/Assemble_getAssembleParameters.cpp | 221 +-
finley/src/Assemble_getNormal.cpp | 75 +-
finley/src/Assemble_getSize.cpp | 68 +-
finley/src/Assemble_gradient.cpp | 172 +-
finley/src/Assemble_integrate.cpp | 79 +-
finley/src/Assemble_interpolate.cpp | 99 +-
finley/src/Assemble_jacobians.cpp | 105 +-
finley/src/CPPAdapter/FinleyAdapterException.cpp | 34 -
finley/src/CPPAdapter/FinleyAdapterException.h | 106 -
finley/src/CPPAdapter/MeshAdapter.cpp | 2277 ------
finley/src/CPPAdapter/MeshAdapter.h | 668 --
finley/src/CPPAdapter/MeshAdapterFactory.cpp | 986 ---
finley/src/CPPAdapter/MeshAdapterFactory.h | 233 -
finley/src/CPPAdapter/finleycpp.cpp | 311 -
finley/src/CPPAdapter/system_dep.h | 46 -
finley/src/DomainFactory.cpp | 881 +++
finley/src/DomainFactory.h | 162 +
finley/src/ElementFile.cpp | 282 +-
finley/src/ElementFile.h | 77 +-
finley/src/ElementFile_jacobians.cpp | 42 +-
finley/src/Finley.cpp | 84 -
finley/src/Finley.h | 42 +-
finley/src/FinleyDomain.cpp | 2460 ++++++
finley/src/FinleyDomain.h | 897 +++
.../src/FinleyException.h | 19 +-
finley/src/FinleyVersion.h | 2 +-
finley/src/IndexList.cpp | 38 +-
finley/src/IndexList.h | 4 +-
finley/src/Mesh.cpp | 638 --
finley/src/Mesh.h | 189 -
finley/src/Mesh_addPoints.cpp | 209 +-
finley/src/Mesh_findMatchingFaces.cpp | 225 +-
finley/src/Mesh_getPasoPattern.cpp | 137 +
finley/src/Mesh_getPattern.cpp | 153 -
finley/src/Mesh_getTrilinosGraph.cpp | 103 +
finley/src/Mesh_glueFaces.cpp | 147 +-
finley/src/Mesh_hex20.cpp | 177 +-
finley/src/Mesh_hex8.cpp | 402 +-
finley/src/Mesh_joinFaces.cpp | 153 +-
finley/src/Mesh_merge.cpp | 252 +-
finley/src/Mesh_optimizeDOFDistribution.cpp | 246 +-
finley/src/Mesh_read.cpp | 944 +--
finley/src/Mesh_readGmsh.cpp | 1331 ++--
finley/src/Mesh_rec4.cpp | 325 +-
finley/src/Mesh_rec8.cpp | 399 +-
finley/src/Mesh_write.cpp | 124 +-
finley/src/NodeFile.cpp | 930 ++-
finley/src/NodeFile.h | 177 +-
finley/src/NodeMapping.h | 9 +-
finley/src/Quadrature.cpp | 121 +-
finley/src/RectangularMesh.h | 56 -
finley/src/ReferenceElementSets.h | 18 +-
finley/src/ReferenceElements.cpp | 18 +-
finley/src/SConscript | 86 +-
finley/src/ShapeFunctions.cpp | 10 +-
finley/src/Util.cpp | 252 +-
finley/src/Util.h | 45 +-
.../dudleycpp.cpp => finley/src/finleycpp.cpp | 193 +-
...dapterTestCase.cpp => FinleyDomainTestCase.cpp} | 28 +-
...eshAdapterTestCase.h => FinleyDomainTestCase.h} | 8 +-
finley/test/SConscript | 11 +-
finley/test/finley_UnitTests.cpp | 10 +-
finley/test/python/SConscript | 45 +-
finley/test/python/data_meshes/brick_4x4x4.fly | 1 +
finley/test/python/data_meshes/brick_8x10x12.fly | 1 +
finley/test/python/data_meshes/hex_2D_macro.msh | 1 +
finley/test/python/data_meshes/hex_2D_order1.msh | 1 +
.../python/data_meshes/hex_2D_order1_macro.msh | 1 +
.../python/data_meshes/hex_2D_order1_onFace.msh | 1 +
finley/test/python/data_meshes/hex_2D_order2.msh | 1 +
.../python/data_meshes/hex_2D_order2_onFace.msh | 1 +
finley/test/python/data_meshes/hex_2D_order2p.msh | 1 +
finley/test/python/data_meshes/hex_3D_macro.msh | 1 +
finley/test/python/data_meshes/hex_3D_order1.msh | 1 +
.../python/data_meshes/hex_3D_order1_macro.msh | 1 +
.../python/data_meshes/hex_3D_order1_onFace.msh | 1 +
finley/test/python/data_meshes/hex_3D_order2.msh | 1 +
.../python/data_meshes/hex_3D_order2_onFace.msh | 1 +
finley/test/python/data_meshes/hex_3D_order2p.msh | 1 +
.../python/data_meshes/hex_contact_2D_order1.msh | 1 +
.../data_meshes/hex_contact_2D_order1_onFace.msh | 1 +
.../python/data_meshes/hex_contact_2D_order2.msh | 1 +
.../data_meshes/hex_contact_2D_order2_onFace.msh | 1 +
.../python/data_meshes/hex_contact_3D_order1.msh | 1 +
.../data_meshes/hex_contact_3D_order1_onFace.msh | 1 +
.../python/data_meshes/hex_contact_3D_order2.msh | 1 +
.../data_meshes/hex_contact_3D_order2_onFace.msh | 1 +
.../test/python/data_meshes/mesh_2Do1_Contact.fly | 1 +
.../mesh_2Do1_Contact_withElementsOnFace.fly | 1 +
.../test/python/data_meshes/mesh_2Do2_Contact.fly | 1 +
.../mesh_2Do2_Contact_withElementsOnFace.fly | 1 +
.../test/python/data_meshes/mesh_3Do1_Contact.fly | 1 +
.../mesh_3Do1_Contact_withElementsOnFace.fly | 1 +
.../test/python/data_meshes/mesh_3Do2_Contact.fly | 1 +
.../mesh_3Do2_Contact_withElementsOnFace.fly | 1 +
finley/test/python/data_meshes/rect_4x4.fly | 1 +
finley/test/python/data_meshes/rect_test.msh | 1 +
finley/test/python/data_meshes/rectangle_8x10.fly | 1 +
finley/test/python/data_meshes/tagtest.msh | 1 +
finley/test/python/data_meshes/test_Add.msh | 1 +
finley/test/python/data_meshes/tet10.fly | 1 +
finley/test/python/data_meshes/tet10_gmsh.msh | 1 +
finley/test/python/data_meshes/tet10_macro.fly | 1 +
finley/test/python/data_meshes/tet4.fly | 1 +
finley/test/python/data_meshes/tet4_gmsh.msh | 1 +
finley/test/python/data_meshes/tet_2D_macro.fly | 1 +
finley/test/python/data_meshes/tet_2D_order1.fly | 1 +
finley/test/python/data_meshes/tet_2D_order2.fly | 1 +
finley/test/python/data_meshes/tet_3D_macro.fly | 1 +
finley/test/python/data_meshes/tet_3D_order1.fly | 1 +
finley/test/python/data_meshes/tet_3D_order2.fly | 1 +
finley/test/python/data_meshes/tri3.fly | 1 +
finley/test/python/data_meshes/tri3_gmsh.msh | 1 +
finley/test/python/data_meshes/tri6.fly | 1 +
finley/test/python/data_meshes/tri6_gmsh.msh | 1 +
finley/test/python/data_meshes/tri6_macro.fly | 1 +
finley/test/python/run_amg.py | 134 +-
finley/test/python/run_darcy.py | 16 +-
finley/test/python/run_escriptOnFinley.py | 246 +-
finley/test/python/run_generators.py | 40 +-
finley/test/python/run_inputOutput.py | 7 +-
finley/test/python/run_linearPDEsOnFinley1_2D1.py | 47 +-
finley/test/python/run_linearPDEsOnFinley1_2D2.py | 47 +-
finley/test/python/run_linearPDEsOnFinley1_3D1.py | 46 +-
.../python/run_linearPDEsOnFinley1_3D2_part1.py | 20 +-
.../python/run_linearPDEsOnFinley1_3D2_part2.py | 20 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-1.py | 12 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-2.py | 13 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-3.py | 12 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-4.py | 13 +-
.../python/run_linearPDEsOnFinley1_3D2_part4.py | 60 -
finley/test/python/run_linearPDEsOnFinley2.py | 134 +-
finley/test/python/run_linearPDEsOnFinley3.py | 91 +-
finley/test/python/run_linearPDEsOnFinleyMacro.py | 129 +-
finley/test/python/run_models.py | 132 +-
...e3dOnFinley.py => run_nonlinearPDEsOnFinley.py} | 16 +-
finley/test/python/run_pasoSolversOnFinley.py | 638 ++
finley/test/python/run_simplesolve.py | 2501 ------
finley/test/python/run_splitworldOnFinley.py | 4 +-
finley/test/python/run_trilinosSolversOnFinley.py | 690 ++
finley/test/python/run_utilOnFinley.py | 61 +-
finley/test/python/run_visualization_interface.py | 638 --
finley/test/python/runcoalgas.py | 126 +-
modellib/test/python/SConscript | 5 +-
modellib/test/python/run_convection.py | 29 +-
modellib/test/python/run_domainreaders.py | 21 +-
modellib/test/python/run_flow.py | 7 +-
.../jessie_mpi_options.py => paso/SConscript | 7 +-
paso/profiling/Paso_tests.cpp | 156 -
paso/profiling/Paso_tests.h | 39 -
paso/profiling/Test.cpp | 235 -
paso/src/AMG.cpp | 301 +-
paso/src/AMG_Interpolation.cpp | 836 +-
paso/src/AMG_Prolongation.cpp | 573 +-
paso/src/AMG_Restriction.cpp | 152 +-
paso/src/AMG_Root.cpp | 100 +-
paso/src/AML.cpp.old | 918 ---
paso/src/BOOMERAMG.cpp | 12 +-
paso/src/BOOMERAMG.h | 4 +-
paso/src/BiCGStab.cpp | 19 +-
paso/src/BlockOps.h | 26 +-
paso/src/Coupler.cpp | 60 +-
paso/src/Coupler.h | 42 +-
paso/src/Distribution.cpp | 37 -
paso/src/Distribution.h | 135 -
paso/src/FCT_Solver.cpp | 102 +-
paso/src/FCT_Solver.h | 10 +-
paso/src/FluxLimiter.cpp | 9 +-
paso/src/FluxLimiter.h | 2 +-
paso/src/Functions.cpp | 14 +-
paso/src/Functions.h | 13 +-
paso/src/GMRES.cpp | 23 +-
paso/src/GMRES2.cpp | 21 +-
paso/src/GSMPI.cpp.old | 605 --
paso/src/ILU.cpp | 692 +-
paso/src/LocalAMG.cpp | 633 +-
paso/src/LocalAMG_Prolongation.cpp | 66 +-
paso/src/MINRES.cpp | 39 +-
paso/src/MKL.cpp | 50 +-
paso/src/MKL.h | 2 +-
paso/src/MergedSolver.cpp | 11 +-
paso/src/MergedSolver.h | 3 +-
paso/src/NewtonGMRES.cpp | 29 +-
paso/src/Options.cpp | 213 +-
paso/src/Options.h | 20 +-
paso/src/PCG.cpp | 23 +-
paso/src/Paso.h | 38 +-
.../src/PasoException.h | 32 +-
paso/src/PasoUtil.cpp | 227 +-
paso/src/PasoUtil.h | 10 +-
paso/src/Pattern.cpp | 24 +-
paso/src/Pattern.h | 6 +-
paso/src/Pattern_mis.cpp | 4 +-
paso/src/Pattern_reduceBandwidth.cpp | 47 +-
paso/src/Preconditioner.cpp | 15 +-
paso/src/Preconditioner.h | 19 +-
paso/src/RILU.cpp | 325 +-
paso/src/ReactiveSolver.cpp | 22 +-
paso/src/ReactiveSolver.h | 12 +-
paso/src/SConscript | 41 +-
paso/src/SchurComplement.cpp | 23 +-
paso/src/SharedComponents.h | 61 +-
paso/src/Smoother.cpp | 70 +-
paso/src/Solver.cpp | 452 +-
paso/src/Solver.h | 52 +-
paso/src/Solver_Function.cpp | 6 +-
paso/src/Solver_applyBlockDiagonalMatrix.cpp.old | 85 -
paso/src/SparseMatrix.cpp | 198 +-
paso/src/SparseMatrix_MatrixMatrix.cpp | 55 +-
paso/src/SparseMatrix_MatrixMatrixTranspose.cpp | 52 +-
paso/src/SparseMatrix_MatrixVector.cpp | 4 +
paso/src/SparseMatrix_getSubmatrix.cpp | 44 +-
paso/src/SparseMatrix_nullifyRowsAndCols.cpp | 1 -
paso/src/SparseMatrix_saveHB.cpp | 5 +-
paso/src/SystemMatrix.cpp | 300 +-
paso/src/SystemMatrix.h | 113 +-
paso/src/SystemMatrixPattern.cpp | 76 +-
paso/src/SystemMatrixPattern.h | 19 +-
paso/src/SystemMatrixPattern_unrollBlocks.cpp | 25 +-
paso/src/SystemMatrix_MatrixVector.cpp | 62 +-
paso/src/SystemMatrix_copyRemoteCoupleBlock.cpp | 78 +-
paso/src/SystemMatrix_debug.cpp | 12 +-
paso/src/SystemMatrix_extendedRows.cpp | 40 +-
paso/src/SystemMatrix_loadMM.cpp | 114 +-
paso/src/SystemMatrix_mergeMainAndCouple.cpp | 29 +-
paso/src/TFQMR.cpp | 24 +-
paso/src/Transport.cpp | 141 +-
paso/src/Transport.h | 51 +-
paso/src/Transport_solve.cpp | 218 +-
paso/src/UMFPACK.cpp | 48 +-
paso/src/UMFPACK.h | 2 +-
paso/src/performance.cpp | 70 +-
paso/src/performance.h | 4 +-
paso/src/solve.cpp | 134 +-
pasowrap/py_src/__init__.py | 28 -
pasowrap/py_src/pasowrap.py | 27 -
pasowrap/src/PasoException.cpp | 48 -
pasowrap/src/PasoException.h | 111 -
pasowrap/src/SConscript | 83 -
pasowrap/src/SystemMatrixAdapter.cpp | 392 -
pasowrap/src/SystemMatrixAdapter.h | 174 -
pasowrap/src/TransportProblemAdapter.cpp | 172 -
pasowrap/src/TransportProblemAdapter.h | 136 -
pasowrap/src/pasowrapcpp.cpp | 66 -
pasowrap/src/system_dep.h | 46 -
pycad/test/python/SConscript | 5 +-
pythonMPI/src/SConscript | 13 +-
pythonMPI/src/ScriptMPI.cpp | 8 +-
pythonMPI/src/ScriptMPIredirect.cpp | 6 +-
{pasowrap/py_src => ripley}/SConscript | 24 +-
ripley/py_src/SConscript | 6 +-
ripley/src/Brick.cpp | 392 +-
ripley/src/Brick.h | 67 +-
ripley/src/DefaultAssembler2D.cpp | 1616 ++--
ripley/src/DefaultAssembler2D.h | 10 +-
ripley/src/DefaultAssembler3D.cpp | 8335 ++++++++++----------
ripley/src/DefaultAssembler3D.h | 10 +-
ripley/src/LameAssembler2D.cpp | 5 +-
ripley/src/LameAssembler2D.h | 4 +-
ripley/src/LameAssembler3D.cpp | 5 +-
ripley/src/LameAssembler3D.h | 4 +-
ripley/src/MultiBrick.cpp | 227 +-
ripley/src/MultiBrick.h | 9 +-
ripley/src/MultiRectangle.cpp | 423 +-
ripley/src/MultiRectangle.h | 8 +-
ripley/src/Rectangle.cpp | 345 +-
ripley/src/Rectangle.h | 41 +-
ripley/src/Ripley.h | 11 +-
ripley/src/RipleyDomain.cpp | 530 +-
ripley/src/RipleyDomain.h | 102 +-
ripley/src/RipleyException.cpp | 29 -
ripley/src/RipleyException.h | 59 +-
ripley/src/RipleySystemMatrix.cu | 11 +-
ripley/src/RipleySystemMatrix.h | 6 +-
ripley/src/SConscript | 84 +-
ripley/src/WaveAssembler2D.cpp | 18 +-
ripley/src/WaveAssembler2D.h | 16 +-
ripley/src/WaveAssembler3D.cpp | 18 +-
ripley/src/WaveAssembler3D.h | 16 +-
ripley/src/blocktools.cpp | 5 +-
ripley/src/blocktools.h | 11 +-
ripley/src/blocktools2.cpp | 7 +-
ripley/src/domainhelpers.cpp | 8 +-
ripley/src/domainhelpers.h | 5 +-
ripley/src/generate_assamblage.py | 56 +-
ripley/src/ripleycpp.cpp | 38 +-
ripley/src/system_dep.h | 3 +-
ripley/test/SConscript | 16 +-
ripley/test/SystemMatrixTestCase.cpp | 7 +-
ripley/test/SystemMatrixTestCase.h | 2 +-
ripley/test/python/SConscript | 27 +-
ripley/test/python/run_customAssemblersOnRipley.py | 8 +-
ripley/test/python/run_escriptOnMultiResolution.py | 10 +-
ripley/test/python/run_escriptOnRipley.py | 12 +-
ripley/test/python/run_linearPDEsOnRipley.py | 206 +-
ripley/test/python/run_pasoSolversOnMultiRes.py | 156 +
ripley/test/python/run_pasoSolversOnRipley.py | 145 +
ripley/test/python/run_readWriteOnMultiRes.py | 11 +-
ripley/test/python/run_readWriteOnRipley.py | 12 +-
ripley/test/python/run_simplesolveOnMultiRes.py | 404 -
ripley/test/python/run_simplesolveOnRipley.py | 392 -
ripley/test/python/run_splitworldOnRipley.py | 4 +-
.../test/python/run_trilinosSolversOnMultiRes.py | 252 +
ripley/test/python/run_trilinosSolversOnRipley.py | 247 +
ripley/test/ripley_UnitTest.cpp | 4 +-
run-escript.in | 10 +-
scons/__init__.py | 0
scons/templates/README_FIRST | 320 +
scons/templates/centos7_0_options.py | 287 +-
scons/templates/fedora21_5_options.py | 287 +-
scons/templates/freebsd10_0_options.py | 280 +-
scons/templates/homebrew_10.10_options.py | 248 +-
scons/templates/homebrew_11_options.py | 253 +-
scons/templates/homebrew_options.py | 247 +-
scons/templates/jessie_mpi_options.py | 1 +
scons/templates/jessie_options.py | 283 +-
scons/templates/jessie_py3_mpi_options.py | 13 +-
scons/templates/jessie_py3_options.py | 11 +-
scons/templates/macports_10.10_options.py | 283 +-
scons/templates/macports_options.py | 283 +-
scons/templates/opensuse13_2_options.py | 289 +-
scons/templates/sid_mpi_options.py | 8 +-
scons/templates/sid_options.py | 326 +-
scons/templates/sid_py3_mpi_options.py | 46 +-
scons/templates/sid_py3_options.py | 45 +-
scons/templates/trusty_options.py | 279 +-
scons/templates/utopic_options.py | 279 +-
scons/templates/vivid_mpi_options.py | 6 +-
scons/templates/vivid_options.py | 282 +-
scons/templates/vivid_py3_mpi_options.py | 15 +-
scons/templates/vivid_py3_options.py | 13 +-
scons/templates/wheezy_mpi_options.py | 6 +-
scons/templates/wheezy_options.py | 281 +-
scons/templates/wheezy_py3_mpi_options.py | 11 +-
scons/templates/wheezy_py3_options.py | 11 +-
scons/templates/windows_options.py | 4 +-
scripts/extracttests.sh | 54 +-
scripts/makesrc.sh | 3 +-
site_scons/dependencies.py | 290 +-
site_scons/extractdebbuild.py | 4 +-
site_scons/grouptest.py | 141 +-
site_scons/site_init.py | 58 +-
{pasowrap/py_src => speckley}/SConscript | 22 +-
speckley/py_src/SConscript | 6 +-
speckley/src/AbstractAssembler.cpp | 4 -
speckley/src/AbstractAssembler.h | 4 +-
speckley/src/Brick.cpp | 66 +-
speckley/src/Brick.h | 13 +-
speckley/src/BrickGradients.cpp | 9 +-
speckley/src/BrickIntegrals.cpp | 10 +-
speckley/src/BrickReductions.cpp | 6 +-
speckley/src/CrossDomainCoupler.cpp | 9 +-
speckley/src/CrossDomainCoupler.h | 5 +-
speckley/src/DefaultAssembler2D.cpp | 7 +-
speckley/src/DefaultAssembler2D.h | 4 +-
speckley/src/DefaultAssembler3D.cpp | 6 +-
speckley/src/DefaultAssembler3D.h | 12 +-
speckley/src/Rectangle.cpp | 72 +-
speckley/src/Rectangle.h | 9 +-
speckley/src/RectangleGradients.cpp | 9 +-
speckley/src/RectangleIntegrals.cpp | 9 +-
speckley/src/RectangleReductions.cpp | 6 +-
speckley/src/SConscript | 70 +-
speckley/src/Speckley.h | 9 +-
speckley/src/SpeckleyDomain.cpp | 11 +-
speckley/src/SpeckleyDomain.h | 16 +-
speckley/src/SpeckleyException.cpp | 33 -
speckley/src/SpeckleyException.h | 65 +-
speckley/src/WaveAssembler2D.cpp | 7 +-
speckley/src/WaveAssembler2D.h | 4 +-
speckley/src/WaveAssembler3D.cpp | 7 +-
speckley/src/WaveAssembler3D.h | 12 +-
speckley/src/domainhelpers.cpp | 9 +-
speckley/src/domainhelpers.h | 5 +-
speckley/src/speckleycpp.cpp | 22 +-
speckley/src/system_dep.h | 2 +-
speckley/test/SConscript | 24 +-
speckley/test/python/SConscript | 25 +-
speckley/test/python/run_readWriteOnSpeckley.py | 22 +-
speckley/test/python/run_specialOnSpeckley.py | 68 +-
svn_version | 2 +-
tools/escriptconvert/SConscript | 1 -
tools/escriptconvert/escriptconvert.cpp | 8 +-
tools/overlord/SConscript | 2 +-
tools/overlord/{overlord.c => overlord.cpp} | 0
.../SConscript | 7 +-
trilinoswrap/src/AbstractMatrixWrapper.h | 68 +
trilinoswrap/src/Amesos2Wrapper.cpp | 204 +
trilinoswrap/src/Amesos2Wrapper.h | 43 +
trilinoswrap/src/BelosWrapper.cpp | 106 +
trilinoswrap/src/BelosWrapper.h | 44 +
trilinoswrap/src/BlockCrsMatrixWrapper.cpp | 274 +
trilinoswrap/src/BlockCrsMatrixWrapper.h | 74 +
trilinoswrap/src/CrsMatrixWrapper.cpp | 281 +
trilinoswrap/src/CrsMatrixWrapper.h | 79 +
trilinoswrap/src/PreconditionerFactory.cpp | 195 +
trilinoswrap/src/PreconditionerFactory.h | 40 +
trilinoswrap/src/SConscript | 61 +
.../src/TrilinosAdapterException.h | 24 +-
trilinoswrap/src/TrilinosMatrixAdapter.cpp | 197 +
trilinoswrap/src/TrilinosMatrixAdapter.h | 105 +
trilinoswrap/src/UnrolledBlockCrsMatrixWrapper.cpp | 60 +
trilinoswrap/src/UnrolledBlockCrsMatrixWrapper.h | 46 +
trilinoswrap/src/types.h | 89 +
trilinoswrap/src/util.h | 91 +
{pasowrap/py_src => weipa}/SConscript | 22 +-
weipa/py_src/SConscript | 6 +-
weipa/src/DataVar.cpp | 28 +-
weipa/src/EscriptDataset.cpp | 58 +-
weipa/src/EscriptDataset.h | 6 +-
weipa/src/FinleyDomain.cpp | 62 +-
weipa/src/FinleyElements.cpp | 122 +-
weipa/src/FinleyElements.h | 15 +-
weipa/src/FinleyNodes.cpp | 108 +-
weipa/src/FinleyNodes.h | 7 +-
weipa/src/RipleyDomain.cpp | 9 +-
weipa/src/RipleyElements.cpp | 14 +-
weipa/src/RipleyNodes.cpp | 13 +-
weipa/src/SConscript | 126 +-
weipa/src/SpeckleyDomain.cpp | 11 +-
weipa/src/SpeckleyElements.cpp | 14 +-
weipa/src/SpeckleyNodes.cpp | 14 +-
weipa/src/VisItControl.cpp | 11 +-
weipa/src/VisItData.cpp | 8 +-
weipa/src/weipa.h | 8 +-
weipa/src/weipacpp.cpp | 4 -
weipa/test/EscriptDatasetTestCase.cpp | 23 +-
weipa/test/SConscript | 17 +-
weipa/test/python/SConscript | 4 +-
weipa/test/python/meshes/hex_2D_macro.msh | 1 +
weipa/test/python/meshes/hex_2D_order2.msh | 1 +
weipa/test/python/meshes/hex_2D_order2p.msh | 1 +
weipa/test/python/meshes/hex_3D_macro.msh | 1 +
weipa/test/python/meshes/hex_3D_order2p.msh | 1 +
weipa/test/python/meshes/hex_contact_2D_order1.msh | 1 +
.../python/meshes/hex_contact_2D_order1_onFace.msh | 1 +
weipa/test/python/meshes/hex_contact_2D_order2.msh | 1 +
.../python/meshes/hex_contact_2D_order2_onFace.msh | 1 +
weipa/test/python/meshes/hex_contact_3D_order1.msh | 1 +
.../python/meshes/hex_contact_3D_order1_onFace.msh | 1 +
weipa/test/python/meshes/hex_contact_3D_order2.msh | 1 +
.../python/meshes/hex_contact_3D_order2_onFace.msh | 1 +
weipa/test/python/meshes/tet_2D_dudley.fly | 1 +
weipa/test/python/meshes/tet_2D_macro.fly | 1 +
weipa/test/python/meshes/tet_2D_order1.fly | 1 +
weipa/test/python/meshes/tet_2D_order2.fly | 1 +
weipa/test/python/meshes/tet_3D_dudley.fly | 3 +-
weipa/test/python/meshes/tet_3D_macro.fly | 1 +
weipa/test/python/meshes/tet_3D_order1.fly | 1 +
weipa/test/python/meshes/tet_3D_order2.fly | 1 +
weipa/test/weipa_UnitTest.cpp | 11 +-
858 files changed, 62032 insertions(+), 74703 deletions(-)
rename CREDITS.txt => CREDITS (81%)
rename README_LICENSE => LICENSE (100%)
create mode 100644 README
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