[adios] branch debian/master updated (ea25f1f -> 524caa4)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Apr 4 12:09:15 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch debian/master
in repository adios.
from ea25f1f Build s390x on openmpi default. Don't try to link against -lmpich.
adds 6b158c2 * Add SZIP support. * Remove hppa, x32 specific rules for mpich. Default to openmpi
adds ab6e875 Fix for libc6 (2.23 in experimental). Closes: #818825
adds 39391ee Prep for release
adds 4a3438f Standards-Version: 3.9.8; no changes required
adds 1741241 Hard-code shell in debian/rules for reproducibility
adds f117041 Prep release
adds 19eb3ad Don't use -lcr for hppa. Closes: #827574
adds 025dd25 Fix for gcc 6.2: Don't define 'bool', its provided.
adds 4449667 Don't define 'bool'
adds d13775d Regresssion: adios_config -d now works. Closes: #834929.
adds 765c054 Remove unnnecessary build-dependency on bash.
adds 73d6ad4 New upstream 1.10.0
adds 85738b9 Merge tag 'upstream/1.10.0' into debian/master
adds b091909 New upstream release
adds f4118a6 DH_COMPAT=10
adds 1f81405 New upstream release
adds d024f49 refresh patches; python3 now upstream
adds e51cf88 refresh patches
adds 697b96b remove sh4, security patch
adds 5589301 disable multiarch_safe, py3
adds cd274ad Also version patch
adds d35e76f disable libc-2.23-fixes.patch
adds 2992284 Build in top dir, not ./src only
adds 633e5c4 Insure vars are not tuples
adds 02562f3 setup3 now obsoleted by adios3 work
adds 8fdb70c Update version-fix.patch
adds 8b1e02d New patch type-bool-already-defined.patch to fix FTBFS against HDF5 1.10. Thanks to Giles Filippini, Closes: #841967
adds 1ac4665 Undo obsolete patches
adds 640320d Adjust build for native adios py3
adds cc9de75 Final build fixes for -1
new 0c48e54 Upstream release 1.11.0
new 22d24d5 Merge tag 'upstream/1.11.0' into debian/master
new f07e6de New upstream release
new c2c61bd Fix version
new 8afa12f rm obsolete patches
new 8990012 Don't install ad_config as binary
new 524caa4 Don't ship ad_config as bin but as python helper module
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 357 +-
COPYING | 17 +
Makefile.am | 67 +-
Makefile.in | 544 +-
NEWS | 37 +
README => README.md | 0
aclocal.m4 | 985 +-
adios_config.flags.cmake | 30 +-
adios_config.flags.in | 39 -
adios_config.flags.makesrc.in | 45 +
adios_config.in => adios_config.makesrc.in | 51 +-
cmake_init | 118 +-
config.h.cmake | 7 +
config.h.in | 62 +-
config/ac_alacrity.m4 | 2 +-
config/ac_dataspaces.m4 | 54 +-
config/ac_dimes.m4 | 47 +-
config/ac_fastbit.m4 | 2 +-
config/ac_mxml.m4 | 8 +-
config/ac_nc4par.m4 | 5 +
config/ac_ncsu_timer.m4 | 61 -
config/ac_phdf5.m4 | 5 +
config/ac_ridcompress.m4 | 73 -
config/ac_zfp.m4 | 83 +
config/acx_mpi.m4 | 217 +-
config/compile | 232 +-
config/depcomp | 531 +-
config/libtool.m4 | 4187 +-
config/ltmain.sh | 8139 ++-
config/ltoptions.m4 | 147 +-
config/ltsugar.m4 | 7 +-
config/ltversion.m4 | 14 +-
config/lt~obsolete.m4 | 17 +-
config/missing | 461 +-
config/test-driver | 127 +
configure | 40450 ++++++-------
configure.ac | 380 +-
debian/adios_config | 4 +-
debian/changelog | 51 +
debian/compat | 2 +-
debian/control | 7 +-
debian/libadios-bin.install | 1 -
debian/libadios-dev.docs | 2 +-
debian/patches/autotools-fixes.patch | 17 -
debian/patches/debian_paths.patch | 50 +-
debian/patches/exclude_cmake.patch | 8 +-
debian/patches/gcc6-fixes.patch | 18 +
debian/patches/mpi4py_fix.patch | 14 +-
debian/patches/mpi_in_place.patch | 77 +-
debian/patches/netcdf-fix.patch | 27 +-
debian/patches/numpy_paths.patch | 22 +-
debian/patches/pkgconfig.patch | 792 +-
debian/patches/python_wrapper.patch | 45 +-
debian/patches/security.patch | 36 -
debian/patches/series | 8 -
debian/patches/sh4.patch | 20 -
debian/patches/version-fix.patch | 18 -
debian/rules | 53 +-
examples/C/CMakeLists.txt | 2 +-
examples/C/Makefile.am | 4 +-
examples/C/Makefile.in | 325 +-
examples/C/arrays/Makefile.am | 2 +-
examples/C/arrays/Makefile.in | 244 +-
examples/C/arrays/arrays.xml | 2 +-
examples/C/attributes/Makefile.am | 2 +-
examples/C/attributes/Makefile.in | 254 +-
examples/C/attributes/attributes.xml | 2 +-
examples/C/attributes/attributes_read.c | 79 +-
examples/C/flexpath_arrays/Makefile.in | 320 +-
.../global_range_select/Makefile.am | 4 +-
.../global_range_select/Makefile.in | 246 +-
.../flexpath_arrays/global_range_select/arrays.xml | 2 +-
.../global_range_select/arrays_read.c | 11 +-
.../C/flexpath_arrays/process_select/Makefile.am | 4 +-
.../C/flexpath_arrays/process_select/Makefile.in | 246 +-
.../C/flexpath_arrays/process_select/arrays.xml | 2 +-
examples/C/global-array-time/Makefile.am | 4 +-
examples/C/global-array-time/Makefile.in | 275 +-
examples/C/global-array-time/adios_globaltime.c | 89 +-
examples/C/global-array-time/adios_globaltime.xml | 9 +-
.../C/global-array-time/adios_globaltime_no_xml.c | 51 +-
.../C/global-array-time/adios_read_globaltime.c | 5 +-
.../adios_read_globaltime_streaming.c | 4 +-
examples/C/global-array/Makefile.am | 12 +-
examples/C/global-array/Makefile.in | 362 +-
examples/C/global-array/adios_global.xml | 2 +-
.../global-array/adios_global_aggregate_by_color.c | 4 +-
examples/C/global-array/adios_global_no_xml.c | 98 +-
examples/C/global-array/adios_read_chunk.c | 4 +-
examples/C/global-array/adios_read_global.c | 5 +-
examples/C/global-array/adios_read_global_no_xml.c | 4 +-
examples/C/global-array/adios_read_writeblock.c | 6 +-
examples/C/global-array/no_xml_write_byid.c | 177 +-
examples/C/global-array/read_no_xml_write_byid.c | 4 +-
examples/C/icee_arrays/Makefile.in | 320 +-
examples/C/icee_arrays/array/Makefile.am | 7 +-
examples/C/icee_arrays/array/Makefile.in | 249 +-
examples/C/icee_arrays/array/adios_read.c | 5 +-
examples/C/icee_arrays/array/adios_write.c | 7 +-
examples/C/manual/Makefile.am | 8 +-
examples/C/manual/Makefile.in | 274 +-
examples/C/manual/config.xml | 2 +-
examples/C/query/Makefile.am | 7 +-
examples/C/query/Makefile.in | 280 +-
examples/C/query/README_table.txt | 12 +-
examples/C/query/query_table.c | 129 +-
examples/C/query/query_vars.c | 202 +-
examples/C/query/write_table.c | 45 +-
examples/C/query/write_vars.c | 51 +-
examples/C/read_all/Makefile.in | 271 +-
examples/C/read_all/read_all.c | 32 +-
examples/C/read_all/read_all_v1.c | 17 +-
examples/C/scalars/Makefile.am | 4 +-
examples/C/scalars/Makefile.in | 258 +-
examples/C/scalars/scalars.xml | 2 +-
examples/C/scalars/scalars_read.c | 4 +-
examples/C/schema/Makefile.am | 18 +-
examples/C/schema/Makefile.in | 328 +-
examples/C/schema/rectilinear2d.xml | 2 +-
examples/C/schema/rectilinear2d_noxml.c | 4 +-
examples/C/schema/structured2d.xml | 2 +-
examples/C/schema/structured2d_noxml.c | 4 +-
examples/C/schema/tri2d.xml | 2 +-
examples/C/schema/tri2d_noxml.c | 6 +-
examples/C/schema/triangle2d.xml | 2 +-
examples/C/schema/uniform2d.xml | 2 +-
examples/C/schema/uniform2d_noxml.c | 4 +-
examples/C/stat/Makefile.am | 2 +-
examples/C/stat/Makefile.in | 244 +-
examples/C/stat/stat.xml | 2 +-
examples/C/time_aggregation/CMakeLists.txt | 24 +
examples/C/time_aggregation/Makefile.am | 23 +
.../Makefile.in | 339 +-
examples/C/time_aggregation/time_aggregation.c | 111 +
examples/C/time_aggregation/time_aggregation.xml | 45 +
.../C/time_aggregation/time_aggregation_no_xml.c | 158 +
examples/C/transforms/Makefile.am | 12 +-
examples/C/transforms/Makefile.in | 283 +-
examples/C/transforms/adios_global.xml | 2 +-
examples/C/transforms/adios_read_points.c | 2 +-
examples/C/transforms/adios_read_subv.c | 2 +-
examples/C/transforms/adios_read_wb_subpg.c | 2 +-
examples/Fortran/Makefile.in | 320 +-
examples/Fortran/arrays/Makefile.am | 2 +-
examples/Fortran/arrays/Makefile.in | 238 +-
examples/Fortran/arrays/arrays.xml | 2 +-
examples/Fortran/global-array-time/Makefile.am | 2 +-
examples/Fortran/global-array-time/Makefile.in | 236 +-
.../Fortran/global-array-time/adios_globaltime.xml | 2 +-
examples/Fortran/global-array/Makefile.am | 6 +-
examples/Fortran/global-array/Makefile.in | 259 +-
examples/Fortran/global-array/adios_global.xml | 2 +-
.../Fortran/global-array/adios_global_no_xml.F90 | 5 +-
.../Fortran/global-array/no_xml_write_byid.F90 | 4 +-
examples/Fortran/scalars/Makefile.am | 2 +-
examples/Fortran/scalars/Makefile.in | 238 +-
examples/Fortran/scalars/scalars.xml | 2 +-
examples/Fortran/schema/Makefile.am | 10 +-
examples/Fortran/schema/Makefile.in | 304 +-
examples/Fortran/schema/rectilinear2d_noxml.F90 | 8 +-
examples/Fortran/schema/structured2d_noxml.F90 | 6 +-
examples/Fortran/schema/tri2d_noxml.F90 | 8 +-
examples/Fortran/schema/tri2d_noxml_seperate.F90 | 10 +-
examples/Fortran/schema/uniform2d_noxml.F90 | 8 +-
examples/Makefile.in | 320 +-
examples/coupling/coupling_reader_2D.xml | 2 +-
examples/coupling/coupling_writer_2D.xml | 2 +-
examples/skel/genarray3d/genarray3d.xml | 2 +-
examples/skel/geos5/geos5.xml | 2 +-
examples/skel/grapes/grapes.xml | 2 +-
examples/skel/gts/gts.xml | 2 +-
examples/skel/picongpu/picongpu.xml | 2 +-
examples/skel/picongpu/picongpu_skel.xml | 2 +-
examples/skel/s3d/s3d.xml | 2 +-
examples/staging/stage_write/genarray_stream.xml | 2 +-
examples/staging/stage_write/stage_write.c | 2 +-
.../stage_write_varyingsize/genarray_varying | Bin 5254828 -> 0 bytes
.../stage_write_varyingsize/genarray_varying.xml | 2 +-
.../staging/stage_write_varyingsize/stage_write | Bin 4501675 -> 0 bytes
.../staging/stage_write_varyingsize/stage_write.c | 2 +-
runconf | 600 +-
scripts/FindADIOS.cmake | 6 +-
src/CMakeLists.txt | 95 +-
src/Makefile.am | 1021 +-
src/Makefile.in | 10693 ++--
src/core/a2sel.c | 262 +
src/core/a2sel.h | 33 +
src/core/adios.c | 225 +-
src/core/adios_bp_v1.c | 45 +-
src/core/adios_bp_v1.h | 1 +
src/core/adios_clock.c | 87 +
src/core/adios_clock.h | 28 +
src/core/adios_copyspec.c | 4 +-
src/core/adios_icee.h | 2 +
src/core/adios_infocache.c | 2 +-
src/core/adios_internals.c | 1556 +-
src/core/adios_internals.h | 184 +-
src/core/adios_internals_mxml.c | 294 +-
src/core/adios_internals_mxml.h | 5 -
src/core/adios_read.c | 19 +-
src/core/adios_read_ext.c | 19 +-
src/core/adios_read_hooks.h | 2 +-
src/core/adios_read_v1.c | 12 +-
src/core/adios_selection_util.c | 28 +-
src/core/adios_selection_util.h | 3 +-
src/core/adios_subvolume.c | 6 +-
src/core/adios_timing.c | 36 +-
src/core/adios_timing.h | 4 +-
src/core/adios_transform_methods.c | 59 +
src/core/adios_transport_hooks.c | 7 +-
src/core/adios_transport_hooks.h | 43 +-
src/core/adiosf.c | 52 +-
src/core/adiosf_defs_mod.f90 | 16 +
src/core/adiosf_read.c | 104 +-
src/core/adiosf_read_mod.f90 | 57 +
src/core/adiosf_read_v1.c | 8 +-
src/core/adiosf_write_mod.f90 | 6826 +--
src/core/bp_utils.c | 108 +-
src/core/bp_utils.h | 7 +-
src/core/buffer.c | 155 +-
src/core/buffer.h | 24 +-
src/core/common_adios.c | 1115 +-
src/core/common_adios.h | 4 +-
src/core/common_read.c | 368 +-
src/core/common_read.h | 10 +-
src/core/flexpath.h | 35 +-
src/core/globals.c | 12 +-
src/core/mpidummy.c | 33 +-
src/core/strutil.c | 356 +
src/core/strutil.h | 53 +
src/core/transforms/adios_patchdata.c | 3 +-
src/core/transforms/adios_transforms_datablock.c | 5 +-
src/core/transforms/adios_transforms_hooks_read.h | 1 +
src/core/transforms/adios_transforms_read.c | 31 +-
src/core/transforms/adios_transforms_read.h | 3 +
src/core/transforms/adios_transforms_reqgroup.c | 20 +-
src/core/transforms/adios_transforms_util.c | 8 +-
src/core/transforms/adios_transforms_util.h | 3 +-
src/core/transforms/adios_transforms_write.c | 51 +-
src/core/transforms/adios_transforms_write.h | 6 +
src/core/types.h | 31 +
src/core/util.c | 404 +-
src/core/util.h | 74 +-
src/core/util_mpi.c | 101 +
src/core/util_mpi.h | 10 +
src/mxml/CMakeLists.txt | 36 +
src/mxml/Makefile.am | 41 +
src/mxml/Makefile.in | 871 +
src/mxml/cmake_try_longlong.c | 6 +
src/mxml/config.h | 39 +
src/mxml/mxml-2.9/ANNOUNCEMENT | 11 +
src/mxml/mxml-2.9/CHANGES | 363 +
src/mxml/mxml-2.9/COPYING | 507 +
src/mxml/mxml-2.9/Makefile.in | 434 +
src/mxml/mxml-2.9/README | 196 +
src/mxml/mxml-2.9/config.h.in | 95 +
src/mxml/mxml-2.9/configure | 5742 ++
src/mxml/mxml-2.9/configure.in | 338 +
src/mxml/mxml-2.9/doc/0.gif | Bin 0 -> 1483 bytes
src/mxml/mxml-2.9/doc/1.gif | Bin 0 -> 1272 bytes
src/mxml/mxml-2.9/doc/2.gif | Bin 0 -> 1417 bytes
src/mxml/mxml-2.9/doc/3.gif | Bin 0 -> 1450 bytes
src/mxml/mxml-2.9/doc/4.gif | Bin 0 -> 1380 bytes
src/mxml/mxml-2.9/doc/5.gif | Bin 0 -> 1432 bytes
src/mxml/mxml-2.9/doc/6.gif | Bin 0 -> 1502 bytes
src/mxml/mxml-2.9/doc/7.gif | Bin 0 -> 1322 bytes
src/mxml/mxml-2.9/doc/8.gif | Bin 0 -> 1534 bytes
src/mxml/mxml-2.9/doc/9.gif | Bin 0 -> 1530 bytes
src/mxml/mxml-2.9/doc/A.gif | Bin 0 -> 1478 bytes
src/mxml/mxml-2.9/doc/B.gif | Bin 0 -> 1427 bytes
src/mxml/mxml-2.9/doc/C.gif | Bin 0 -> 1479 bytes
src/mxml/mxml-2.9/doc/D.gif | Bin 0 -> 1463 bytes
src/mxml/mxml-2.9/doc/E.gif | Bin 0 -> 672 bytes
src/mxml/mxml-2.9/doc/F.gif | Bin 0 -> 641 bytes
src/mxml/mxml-2.9/doc/advanced.html | 634 +
src/mxml/mxml-2.9/doc/basics.html | 606 +
src/mxml/mxml-2.9/doc/chapters.xcf.gz | Bin 0 -> 6565 bytes
src/mxml/mxml-2.9/doc/docset.css | 114 +
src/mxml/mxml-2.9/doc/docset.header | 16 +
src/mxml/mxml-2.9/doc/docset.intro | 178 +
src/mxml/mxml-2.9/doc/footer.man | 4 +
src/mxml/mxml-2.9/doc/install.html | 119 +
src/mxml/mxml-2.9/doc/intro.html | 194 +
src/mxml/mxml-2.9/doc/intro.man | 173 +
src/mxml/mxml-2.9/doc/license.html | 594 +
src/mxml/mxml-2.9/doc/logo.gif | Bin 0 -> 5796 bytes
src/mxml/mxml-2.9/doc/logo.xcf.gz | Bin 0 -> 13923 bytes
src/mxml/mxml-2.9/doc/makedocs.sh | 28 +
src/mxml/mxml-2.9/doc/mxml.book | 11 +
src/mxml/mxml-2.9/doc/mxml.html | 4239 ++
src/mxml/mxml-2.9/doc/mxmldoc.html | 204 +
src/mxml/mxml-2.9/doc/mxmldoc.man | 198 +
src/mxml/mxml-2.9/doc/mxmldoc.xsd | 189 +
src/mxml/mxml-2.9/doc/reference.heading | 4 +
src/mxml/mxml-2.9/doc/reference.html | 1792 +
src/mxml/mxml-2.9/doc/relnotes.html | 583 +
src/mxml/mxml-2.9/doc/schema.html | 201 +
src/mxml/mxml-2.9/doc/title.html | 32 +
src/mxml/mxml-2.9/install-sh | 251 +
src/mxml/mxml-2.9/mxml-attr.c | 314 +
src/mxml/mxml-2.9/mxml-entity.c | 449 +
src/mxml/mxml-2.9/mxml-file.c | 3053 +
src/mxml/mxml-2.9/mxml-get.c | 452 +
src/mxml/mxml-2.9/mxml-index.c | 659 +
src/mxml/mxml-2.9/mxml-node.c | 788 +
src/mxml/mxml-2.9/mxml-private.c | 323 +
src/mxml/mxml-2.9/mxml-private.h | 50 +
src/mxml/mxml-2.9/mxml-search.c | 280 +
src/mxml/mxml-2.9/mxml-set.c | 337 +
src/mxml/mxml-2.9/mxml-string.c | 469 +
src/mxml/mxml-2.9/mxml.h | 332 +
src/mxml/mxml-2.9/mxml.list.in | 107 +
src/mxml/mxml-2.9/mxml.pc.in | 10 +
src/mxml/mxml-2.9/mxml.spec | 95 +
src/mxml/mxml-2.9/mxml.xml | 1627 +
src/mxml/mxml-2.9/mxmldoc.c | 5797 ++
src/mxml/mxml-2.9/test.xml | 29 +
src/mxml/mxml-2.9/test/class.cxx | 84 +
src/mxml/mxml-2.9/test/dotest.sh | 47 +
src/mxml/mxml-2.9/test/enum.cxx | 17 +
src/mxml/mxml-2.9/test/function.cxx | 107 +
src/mxml/mxml-2.9/test/functype.cxx | 1 +
src/mxml/mxml-2.9/test/struct.cxx | 55 +
src/mxml/mxml-2.9/test/type.cxx | 3 +
src/mxml/mxml-2.9/testmxml.c | 860 +
src/mxml/mxml-2.9/vcnet/config.h | 123 +
src/mxml/mxml-2.9/vcnet/mxml.sln | 51 +
src/mxml/mxml-2.9/vcnet/mxml1.def | 77 +
src/mxml/mxml-2.9/vcnet/mxml1.vcproj | 424 +
src/mxml/mxml-2.9/vcnet/mxmldoc.vcproj | 364 +
src/mxml/mxml-2.9/vcnet/testmxml.vcproj | 364 +
src/nssi/adios_nssi_args.x | 250 -
src/nssi/adios_nssi_config.c | 373 -
src/nssi/adios_nssi_config.h | 31 -
src/nssi/adios_nssi_filter.c | 1419 -
src/nssi/aggregation.cpp | 1120 -
src/nssi/aggregation.h | 58 -
src/nssi/io_timer.h | 27 -
src/nssi/nssi_coupling_server.cpp | 1703 -
src/nssi/nssi_staging_server.cpp | 853 -
src/public/adios.h | 40 +-
src/public/adios_error.h | 3 +
src/public/adios_query.h | 117 +-
src/public/adios_read_ext.h | 9 +
src/public/adios_read_v2.h | 20 +-
src/public/adios_selection.h | 26 +-
src/public/adios_transform_methods.h | 25 +
src/public/adios_types.h | 10 +
src/public/adios_version.h | 6 +-
src/public/mpidummy.h | 10 +-
src/query/Makefile.plugins | 1 +
src/query/Makefile.plugins.cmake | 2 +
src/query/adios_query.c | 46 +-
src/query/adios_query_hooks.c | 1 +
src/query/adios_query_hooks.h | 5 +-
src/query/adios_query_mod.f90 | 1 +
src/query/adiosf_query.c | 39 +-
src/query/common_query.c | 519 +-
src/query/common_query.h | 20 +-
src/query/common_query_read.c | 584 +
src/query/fastbit_adios.c | 61 +-
src/query/fastbit_adios.h | 41 +-
src/query/query_alac.c | 1300 +-
src/query/query_fastbit.c | 590 +-
src/query/query_minmax.c | 769 +
src/query/query_utils.c | 1 +
src/read/read_bp.c | 974 +-
src/read/read_bp_staged.c | 30 +-
src/read/read_dataspaces.c | 60 +-
src/read/read_datatap.c | 2300 -
src/read/read_dimes.c | 28 +-
src/read/read_flexpath.c | 141 +-
src/read/read_icee.c | 323 +-
src/read/read_nssi.c | 659 -
src/transforms/Makefile.plugins | 4 +
src/transforms/adios_transform_alacrity_common.h | 2 +-
src/transforms/adios_transform_alacrity_read.c | 1 +
src/transforms/adios_transform_alacrity_write.c | 2 +-
src/transforms/adios_transform_aplod_read.c | 4 +-
src/transforms/adios_transform_aplod_write.c | 1 +
src/transforms/adios_transform_bzip2_read.c | 1 +
src/transforms/adios_transform_bzip2_write.c | 5 +-
src/transforms/adios_transform_identity_read.c | 2 +
src/transforms/adios_transform_isobar_read.c | 1 +
src/transforms/adios_transform_isobar_write.c | 7 +-
src/transforms/adios_transform_szip_read.c | 1 +
src/transforms/adios_transform_zfp_common.h | 235 +
src/transforms/adios_transform_zfp_read.c | 223 +
src/transforms/adios_transform_zfp_write.c | 268 +
src/transforms/adios_transform_zlib_write.c | 5 +-
src/transforms/transform_plugins.h | 1 +
src/write/adios_dataspaces.c | 60 +-
src/write/adios_datatap.c | 1082 -
src/write/adios_dimes.c | 47 +-
src/write/adios_flexpath.c | 286 +-
src/write/adios_icee.c | 330 +-
src/write/adios_mpi.c | 1167 +-
src/write/adios_mpi_amr.c | 1418 +-
src/write/adios_mpi_bgq.c | 586 +-
src/write/adios_mpi_lustre.c | 950 +-
src/write/adios_nc4.c | 16 +-
src/write/adios_nssi.c | 1648 -
src/write/adios_phdf5.c | 72 +-
src/write/adios_posix.c | 893 +-
src/write/adios_posix1.c | 876 -
src/write/adios_var_merge.c | 42 +-
src/zfp/CMakeLists.txt | 40 +
src/zfp/Makefile.am | 61 +
src/zfp/Makefile.in | 928 +
src/zfp/zfp-0.5.0/API | 439 +
src/zfp/zfp-0.5.0/Config | 49 +
src/zfp/zfp-0.5.0/FAQ | 371 +
src/zfp/zfp-0.5.0/LICENSE | 57 +
src/zfp/zfp-0.5.0/Makefile | 16 +
src/zfp/zfp-0.5.0/README | 422 +
src/zfp/zfp-0.5.0/VERSIONS | 161 +
src/zfp/zfp-0.5.0/array/cache.h | 224 +
src/zfp/zfp-0.5.0/array/memory.h | 42 +
src/zfp/zfp-0.5.0/array/zfparray.h | 105 +
src/zfp/zfp-0.5.0/array/zfparray1.h | 243 +
src/zfp/zfp-0.5.0/array/zfparray2.h | 273 +
src/zfp/zfp-0.5.0/array/zfparray3.h | 284 +
src/zfp/zfp-0.5.0/array/zfpcodec.h | 17 +
src/zfp/zfp-0.5.0/array/zfpcodecd.h | 149 +
src/zfp/zfp-0.5.0/array/zfpcodecf.h | 149 +
src/zfp/zfp-0.5.0/examples/Makefile | 35 +
src/zfp/zfp-0.5.0/examples/array2d.h | 25 +
src/zfp/zfp-0.5.0/examples/diffusion.cpp | 107 +
src/zfp/zfp-0.5.0/examples/fields.c | 12201 ++++
src/zfp/zfp-0.5.0/examples/fields.h | 20 +
src/zfp/zfp-0.5.0/examples/pgm.c | 112 +
src/zfp/zfp-0.5.0/examples/simple.c | 99 +
src/zfp/zfp-0.5.0/examples/speed.c | 136 +
src/zfp/zfp-0.5.0/examples/testzfp.cpp | 705 +
src/zfp/zfp-0.5.0/examples/zfp.c | 480 +
src/zfp/zfp-0.5.0/inc/bitstream.h | 87 +
src/zfp/zfp-0.5.0/inc/macros.h | 7 +
src/zfp/zfp-0.5.0/inc/system.h | 20 +
src/zfp/zfp-0.5.0/inc/types.h | 30 +
src/zfp/zfp-0.5.0/inc/zfp.h | 549 +
src/zfp/zfp-0.5.0/src/Makefile | 21 +
src/zfp/zfp-0.5.0/src/bitstream.c | 4 +
src/zfp/zfp-0.5.0/src/block1.h | 1 +
src/zfp/zfp-0.5.0/src/block2.h | 1 +
src/zfp/zfp-0.5.0/src/block3.h | 1 +
src/zfp/zfp-0.5.0/src/decode1d.c | 10 +
src/zfp/zfp-0.5.0/src/decode1f.c | 10 +
src/zfp/zfp-0.5.0/src/decode2d.c | 10 +
src/zfp/zfp-0.5.0/src/decode2f.c | 10 +
src/zfp/zfp-0.5.0/src/decode3d.c | 10 +
src/zfp/zfp-0.5.0/src/decode3f.c | 10 +
src/zfp/zfp-0.5.0/src/encode1d.c | 10 +
src/zfp/zfp-0.5.0/src/encode1f.c | 10 +
src/zfp/zfp-0.5.0/src/encode2d.c | 10 +
src/zfp/zfp-0.5.0/src/encode2f.c | 10 +
src/zfp/zfp-0.5.0/src/encode3d.c | 10 +
src/zfp/zfp-0.5.0/src/encode3f.c | 10 +
src/zfp/zfp-0.5.0/src/inline/bitstream.c | 410 +
src/zfp/zfp-0.5.0/src/inline/inline.h | 12 +
src/zfp/zfp-0.5.0/src/template/codec.h | 3 +
src/zfp/zfp-0.5.0/src/template/codec1.c | 11 +
src/zfp/zfp-0.5.0/src/template/codec2.c | 39 +
src/zfp/zfp-0.5.0/src/template/codec3.c | 97 +
src/zfp/zfp-0.5.0/src/template/compress.c | 104 +
src/zfp/zfp-0.5.0/src/template/decode.c | 165 +
src/zfp/zfp-0.5.0/src/template/decode1.c | 55 +
src/zfp/zfp-0.5.0/src/template/decode2.c | 62 +
src/zfp/zfp-0.5.0/src/template/decode3.c | 70 +
src/zfp/zfp-0.5.0/src/template/decompress.c | 104 +
src/zfp/zfp-0.5.0/src/template/encode.c | 216 +
src/zfp/zfp-0.5.0/src/template/encode1.c | 55 +
src/zfp/zfp-0.5.0/src/template/encode2.c | 65 +
src/zfp/zfp-0.5.0/src/template/encode3.c | 77 +
src/zfp/zfp-0.5.0/src/template/template.h | 12 +
src/zfp/zfp-0.5.0/src/traitsd.h | 11 +
src/zfp/zfp-0.5.0/src/traitsf.h | 17 +
src/zfp/zfp-0.5.0/src/zfp.c | 719 +
tests/C/CMakeLists.txt | 1 -
tests/C/Makefile.am | 2 +-
tests/C/Makefile.in | 367 +-
tests/C/adios_test_c.c | 15 +-
tests/C/config_c.xml | 2 +-
tests/C/fgr_tests/CMakeLists.txt | 1 -
tests/C/fgr_tests/Makefile.am | 2 +-
tests/C/fgr_tests/Makefile.in | 258 +-
tests/C/fgr_tests/posix_fgr.c | 1 +
tests/C/flexpath_tests/1D_arr_global/Makefile.am | 6 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 265 +-
tests/C/flexpath_tests/1D_arr_global/reader.c | 10 +-
.../1D_arr_global/test_config_flex.xml | 2 +-
tests/C/flexpath_tests/1D_arr_global/writer.c | 4 +-
.../1D_arr_global_noxml/CMakeLists.txt | 1 -
.../flexpath_tests/1D_arr_global_noxml/Makefile.am | 6 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 277 +-
.../C/flexpath_tests/1D_arr_global_noxml/writer.c | 8 +-
tests/C/flexpath_tests/Makefile.in | 320 +-
tests/C/flexpath_tests/common/utils.c | 1 +
.../global_range_select/CMakeLists.txt | 1 -
.../flexpath_tests/global_range_select/Makefile.am | 4 +-
.../flexpath_tests/global_range_select/Makefile.in | 246 +-
.../flexpath_tests/global_range_select/arrays.xml | 2 +-
tests/C/flexpath_tests/include/test_common.h | 2 +-
tests/C/flexpath_tests/maya_append/CMakeLists.txt | 1 -
tests/C/flexpath_tests/maya_append/Makefile.am | 6 +-
tests/C/flexpath_tests/maya_append/Makefile.in | 282 +-
tests/C/flexpath_tests/maya_append/writer.c | 6 +-
tests/C/flexpath_tests/maya_noxml/CMakeLists.txt | 1 -
tests/C/flexpath_tests/maya_noxml/Makefile.am | 6 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 294 +-
tests/C/flexpath_tests/maya_noxml/writer.c | 8 +-
tests/C/flexpath_tests/scalar/CMakeLists.txt | 1 -
tests/C/flexpath_tests/scalar/Makefile.am | 6 +-
tests/C/flexpath_tests/scalar/Makefile.in | 265 +-
tests/C/flexpath_tests/scalar/test_config_flex.xml | 2 +-
tests/C/flexpath_tests/scalar/test_config_mpi.xml | 2 +-
tests/C/flexpath_tests/scalar/writer.c | 4 +-
tests/C/query/Makefile.in | 320 +-
tests/C/query/alacrity/CMakeLists.txt | 4 +-
tests/C/query/alacrity/DS1/DS1-inputs.xml | 10 +
tests/C/query/alacrity/DS1/DS1-notrans.xml | 22 +
tests/C/query/alacrity/DS1/DS1.xml | 22 +
tests/C/query/alacrity/DS2/DS2-inputs.xml | 9 +
tests/C/query/alacrity/DS2/DS2-notrans.xml | 22 +
tests/C/query/alacrity/DS2/DS2.xml | 22 +
tests/C/query/alacrity/DS3/DS3-inputs-3.xml | 29 +
tests/C/query/alacrity/DS3/DS3-inputs-WB.xml | 26 +
tests/C/query/alacrity/DS3/DS3-inputs.xml | 35 +
tests/C/query/alacrity/DS3/DS3.xml | 25 +
tests/C/query/alacrity/Makefile.am | 33 +-
tests/C/query/alacrity/Makefile.in | 349 +-
tests/C/query/alacrity/adios_alac_query.c | 47 +-
tests/C/query/alacrity/adios_build_alac_index.c | 74 +-
.../xml/xml/alacrity-1var-no-transform.xml | 25 +
tests/C/query/alacrity/xml/xml/alacrity-1var.xml | 25 +
.../xml/xml/alacrity-2var-no-transform.xml | 26 +
.../C/query/alacrity/xml/xml/alacrity-2var-pfd.xml | 26 +
tests/C/query/alacrity/xml/xml/alacrity-2var.xml | 26 +
.../alacrity/xml/xml/alacrity-gen-1var-1D.xml | 19 +
.../C/query/alacrity/xml/xml/alacrity-gen-1var.xml | 22 +
tests/C/query/alacrity/xml/xml/alacrity.xml | 28 +
.../alacrity/xml/xml/build-alac-index-inputs.xml | 7 +
tests/C/query/common/CMakeLists.txt | 3 +-
tests/C/query/common/Makefile.am | 12 +-
tests/C/query/common/Makefile.in | 290 +-
tests/C/query/common/adios_query_test.c | 171 +-
tests/C/query/common/adios_query_xml_parse.c | 122 +-
.../query/common/compute_expected_query_results.c | 28 +-
tests/C/query/fastbit/CMakeLists.txt | 5 +-
tests/C/query/fastbit/Makefile.am | 15 +-
tests/C/query/fastbit/Makefile.in | 278 +-
tests/C/query/fastbit/fastbit_tests.c | 307 +-
tests/C/query/fastbit/query.xml | 68 +
.../DS-1D/{query0.xml => DS-1D.query0.xml} | 0
.../DS-1D/{query1.xml => DS-1D.query1.xml} | 0
.../DS-2D/{query0.xml => DS-2D.query0.xml} | 0
.../DS-2D/{query1.xml => DS-2D.query1.xml} | 0
.../DS-3D/{query-wb0.xml => DS-3D.query-wb0.xml} | 0
.../DS-3D/{query-wb1.xml => DS-3D.query-wb1.xml} | 0
.../DS-3D/{query0.xml => DS-3D.query0.xml} | 0
.../DS-3D/{query1.xml => DS-3D.query1.xml} | 0
...-particle-query0.xml => DS-particle.query0.xml} | 0
...-particle-query1.xml => DS-particle.query1.xml} | 0
.../{query0.xml => DS-unevenpg.query0.xml} | 0
.../{query1.xml => DS-unevenpg.query1.xml} | 0
tests/CMakeLists.txt | 2 +
tests/Fortran/Makefile.am | 2 +-
tests/Fortran/Makefile.in | 235 +-
tests/Fortran/adios_test_f.F90 | 2 +-
tests/Fortran/config_fortran.xml | 2 +-
tests/Makefile.am | 15 +-
tests/Makefile.in | 328 +-
tests/bp_read/Makefile.am | 2 +-
tests/bp_read/Makefile.in | 299 +-
tests/bp_read/bp_read_c.c | 10 +-
tests/bp_read/genbp.c | 8 +-
tests/bp_read/testbp_c.xml | 4 +-
tests/genarray/CMakeLists.txt | 4 +-
tests/genarray/Makefile.am | 8 +-
tests/genarray/Makefile.in | 276 +-
tests/genarray/genarray.xml | 2 +-
tests/genarray/genarray3d.xml | 2 +-
tests/suite/Makefile.in | 320 +-
tests/suite/programs/CMakeLists.txt | 12 +-
tests/suite/programs/Makefile.am | 75 +-
tests/suite/programs/Makefile.in | 1257 +-
tests/suite/programs/adios_amr_write.xml | 2 +-
tests/suite/programs/adios_amr_write_2vars.xml | 2 +-
tests/suite/programs/adios_transforms.xml | 2 +-
tests/suite/programs/adios_transforms_read_write.c | 2 +-
tests/suite/programs/big_file.c | 4 +-
tests/suite/programs/blocks.c | 5 +-
tests/suite/programs/build_standard_dataset.c | 17 +-
tests/suite/programs/connect_to_space_subset.c | 4 +-
tests/suite/programs/examples/Makefile.in | 320 +-
.../programs/examples/attributes/CMakeLists.txt | 2 +-
.../suite/programs/examples/attributes/Makefile.am | 2 +-
.../suite/programs/examples/attributes/Makefile.in | 254 +-
.../programs/examples/attributes/attributes_C.xml | 2 +-
.../programs/examples/global_array/CMakeLists.txt | 2 +-
.../programs/examples/global_array/Makefile.am | 16 +-
.../programs/examples/global_array/Makefile.in | 354 +-
.../examples/global_array/global_array_C.xml | 2 +-
.../examples/global_array/global_array_F.xml | 4 +-
.../global_array_aggregate_by_color_C.c | 4 +-
.../examples/global_array/global_array_read_C.c | 2 +-
.../global_array/global_array_read_byid_noxml_C.c | 2 +-
.../global_array/global_array_read_noxml_C.c | 2 +-
.../global_array/global_array_write_byid_noxml_C.c | 4 +-
.../global_array_write_byid_noxml_F.F90 | 4 +-
.../global_array/global_array_write_noxml_C.c | 4 +-
.../global_array/global_array_write_noxml_F.F90 | 4 +-
.../examples/global_array_time/CMakeLists.txt | 4 +-
.../examples/global_array_time/Makefile.am | 6 +-
.../examples/global_array_time/Makefile.in | 287 +-
.../global_array_time/global_array_time_C.xml | 2 +-
.../global_array_time/global_array_time_F.xml | 2 +-
...ray_time_C.xml => global_array_time_aggr_C.xml} | 3 +-
.../global_array_time_read_as_stream_C.c | 2 +-
.../global_array_time/global_array_time_write_C.c | 84 +-
.../programs/examples/local_array/CMakeLists.txt | 2 +-
.../programs/examples/local_array/Makefile.am | 2 +-
.../programs/examples/local_array/Makefile.in | 254 +-
.../examples/local_array/local_array_C.xml | 2 +-
.../suite/programs/examples/scalars/CMakeLists.txt | 4 +-
tests/suite/programs/examples/scalars/Makefile.am | 4 +-
tests/suite/programs/examples/scalars/Makefile.in | 301 +-
.../suite/programs/examples/scalars/scalars_C.xml | 2 +-
.../suite/programs/examples/scalars/scalars_F.xml | 2 +-
.../programs/examples/scalars/scalars_read_C.c | 28 +-
.../programs/examples/scalars/scalars_read_F.F90 | 30 +-
tests/suite/programs/local_array_time.c | 4 +
tests/suite/programs/local_array_time.xml | 5 +-
tests/suite/programs/many_vars.c | 4 +-
tests/suite/programs/path_test.xml | 2 +-
tests/suite/programs/posix_method.xml | 2 +-
tests/suite/programs/reuse_dim.c | 4 +-
tests/suite/programs/selections.c | 4 +-
tests/suite/programs/set_path.xml | 2 +-
tests/suite/programs/set_path_var.xml | 2 +-
tests/suite/programs/steps_write.c | 4 +-
tests/suite/programs/transforms.xml | 2 +-
tests/suite/programs/two_groups.c | 16 +-
tests/suite/programs/two_groups.xml | 2 +-
tests/suite/programs/write_alternate.c | 1 +
tests/suite/programs/write_alternate.xml | 2 +-
tests/suite/programs/write_read.xml | 2 +-
tests/suite/reference/attributes_bpls.txt | 2 +-
tests/suite/reference/global_array_no_xml_bpls.txt | 2 +-
.../suite/reference/global_array_no_xml_f_bpls.txt | 2 +-
tests/suite/reference/global_array_time_bpls.txt | 4 +-
tests/suite/reference/local_array_C_bpls.txt | 4 +-
tests/suite/reference/no_xml_write_byid_bpls.txt | 2 +-
tests/suite/reference/no_xml_write_byid_f_bpls.txt | 2 +-
tests/suite/test.sh | 17 +-
tests/suite/tests/01_scalars.sh | 4 +-
tests/suite/tests/05_global_array_time.sh | 53 +-
tests/suite/tests/19_query.sh | 48 +-
tests/suite/tests/20_transforms_writeblock.sh | 4 +-
tests/test_src/CMakeLists.txt | 44 +
tests/test_src/Makefile.am | 128 +
tests/test_src/Makefile.in | 1654 +
tests/test_src/array_attribute.c | 327 +
.../{suite/programs => test_src}/copy_subvolume.c | 0
.../{suite/programs => test_src}/group_free_test.c | 4 +-
tests/{suite/programs => test_src}/hashtest.c | 0
tests/test_src/points_1DtoND.c | 422 +
tests/test_src/query_minmax.c | 379 +
tests/test_src/read_points_2d.c | 694 +
tests/test_src/selection_api.F90 | 218 +
tests/test_src/test_strutil.c | 141 +
tests/test_src/text_to_pairstruct.c | 127 +
.../programs => test_src}/transforms_specparse.c | 0
tests/test_src/trim_spaces.c | 62 +
utils/CMakeLists.txt | 2 +-
utils/Makefile.am | 14 +-
utils/Makefile.in | 341 +-
utils/adios_lint/CMakeLists.txt | 1 +
utils/adios_lint/Makefile.am | 6 +-
utils/adios_lint/Makefile.in | 277 +-
utils/adios_list_methods/CMakeLists.txt | 28 +
utils/adios_list_methods/Makefile.am | 44 +
.../Makefile.in | 475 +-
utils/adios_list_methods/adios_list_methods.c | 107 +
utils/bp2ascii/Makefile.am | 6 +-
utils/bp2ascii/Makefile.in | 264 +-
utils/bp2ascii/bp2ascii.c | 15 +-
utils/bp2bp/Makefile.am | 2 +-
utils/bp2bp/Makefile.in | 279 +-
utils/bp2bp/bp2bp.c | 31 +-
utils/bp2h5/Makefile.am | 5 +-
utils/bp2h5/Makefile.in | 312 +-
utils/bp2h5/bp2h5.c | 60 +-
utils/bp2ncd/Makefile.am | 10 +-
utils/bp2ncd/Makefile.in | 304 +-
utils/bp2ncd/bp2ncd.c | 52 +-
utils/bpdiff/Makefile.in | 285 +-
utils/bpdiff/bpdiff.c | 23 +-
utils/bpdiff/utils.c | 8 +-
utils/bpdiff/utils.h | 1 +
utils/bpdump/Makefile.am | 6 +-
utils/bpdump/Makefile.in | 281 +-
utils/bpdump/bpdump.c | 79 +-
utils/bpls/Makefile.in | 277 +-
utils/bpls/bpls.c | 79 +-
utils/bpmeta/CMakeLists.txt | 2 +-
utils/bpmeta/Makefile.am | 6 +-
utils/bpmeta/Makefile.in | 281 +-
utils/bpmeta/bpmeta.c | 53 +-
utils/bprecover/Makefile.am | 6 +-
utils/bprecover/Makefile.in | 277 +-
utils/bprecover/bprecover.c | 89 +-
utils/bpsplit/Makefile.am | 11 +-
utils/bpsplit/Makefile.in | 311 +-
utils/bpsplit/bpappend.c | 51 +-
utils/bpsplit/bpsplit.c | 39 +-
utils/fastbit/Makefile.am | 10 +-
utils/fastbit/Makefile.in | 284 +-
utils/fastbit/adios_index_fastbit.c | 38 +-
utils/gpp/CMakeLists.txt | 7 +-
utils/gpp/Makefile.am | 9 +-
utils/gpp/Makefile.in | 201 +-
utils/gpp/ad_config.py | 20 +-
utils/gpp/gpp.py | 27 +-
utils/gpp/{gpp.py => gpp.py.in} | 27 +-
utils/gpp/type_mapper.py | 14 +-
utils/list_methods/CMakeLists.txt | 28 -
utils/list_methods/Makefile.am | 36 -
utils/list_methods/list_methods.c | 438 -
utils/skel/CMakeLists.txt | 31 +-
utils/skel/Makefile.am | 9 +-
utils/skel/Makefile.in | 368 +-
.../skel/bin/{set_method.sh => skel_set_method.sh} | 0
utils/skel/etc/Makefile.in | 162 +-
utils/skel/etc/templates/Makefile.default.tpl | 2 +-
utils/skel/etc/templates/submit_jaguar.tpl | 2 +-
utils/skel/etc/templates/submit_nautilus.tmpl | 2 +-
utils/skel/etc/templates/submit_nautilus.tpl | 2 +-
utils/skel/etc/templates/submit_sith.tmpl | 2 +-
utils/skel/etc/templates/submit_sith.tpl | 2 +-
utils/skel/etc/templates/xml.tmpl | 2 +-
utils/skel/src/Makefile.in | 305 +-
utils/skeldump/Makefile.in | 277 +-
utils/skeldump/skeldump.c | 92 +-
wrappers/java/CMakeLists.txt | 6 +-
wrappers/java/gov/ornl/ccs/Adios.java | 8 +-
wrappers/java/gov_ornl_ccs_Adios.cxx | 40 +-
wrappers/java/test/AdiosNoxmlTest.java | 14 +-
wrappers/java/test/test1.sh | 2 +-
wrappers/matlab/posix_method.bp | Bin 1257 -> 0 bytes
.../matlab/posix_method.bp.dir/posix_method.bp.0 | Bin 10373 -> 0 bytes
wrappers/matlab/two_groups19.bp | 1 -
wrappers/matlab/xgc.diagnosis.bp | 1 -
wrappers/numpy/DEVELOPER | 17 +
wrappers/numpy/MANIFEST.in | 3 +
wrappers/numpy/{conf => _hl}/__init__.py | 0
wrappers/numpy/_hl/selections.py | 309 +
wrappers/numpy/adios.cpp | 60261 ++++++++++++-------
wrappers/numpy/adios.pyx | 1581 +-
wrappers/numpy/adios_mpi.cpp | 49377 ++++++++++-----
wrappers/numpy/adios_mpi.pyx | 1581 +-
wrappers/numpy/adios_mpi2serial.sed | 3 +
wrappers/numpy/build-and-install.sh | 14 +
wrappers/numpy/doc/source/build.rst | 24 +-
wrappers/numpy/doc/source/quick.rst | 63 +-
wrappers/numpy/example/staging/README | 4 +
wrappers/numpy/example/staging/adios_read_mpi.py | 44 +
wrappers/numpy/example/staging/adios_write_mpi.py | 53 +
wrappers/numpy/example/staging/job.pbs | 58 +
wrappers/numpy/example/utils/bpls.py | 8 +-
wrappers/numpy/mpi-compat.h | 14 +
wrappers/numpy/setup.py | 41 +-
wrappers/numpy/setup_mpi.py | 142 +-
wrappers/numpy/src/__init__.py | 2 +
wrappers/numpy/src_mpi/__init__.py | 2 +
wrappers/numpy/test/README | 8 +
wrappers/numpy/{conf => test}/__init__.py | 0
wrappers/numpy/test/test_adios_group_unittest.py | 148 +
...s_unittest.py => test_adios_prefix_unittest.py} | 70 +-
.../numpy/test/test_adios_timestep_unittest.py | 63 +-
wrappers/numpy/test/test_adios_unittest.py | 105 +-
wrappers/numpy/test/test_adios_write_unittest.py | 8 +-
wrappers/numpy/test/test_adios_writer_unittest.py | 138 +-
wrappers/numpy/test/test_selections.py | 90 +
wrappers/numpy/tests/config.xml | 2 +-
wrappers/numpy/tests/config_mpi.xml | 2 +-
wrappers/numpy/tests/test_adios.py | 20 +-
wrappers/numpy/tests/test_adios_attribute.py | 63 +
wrappers/numpy/tests/test_adios_matplot.py | 19 +-
wrappers/numpy/tests/test_adios_mpi.py | 20 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 35 +-
wrappers/numpy/tests/test_adios_timestep.py | 25 +-
wrappers/numpy/tests/test_adios_writer.py | 34 +-
wrappers/numpy/uninstal-adios-modules.sh | 34 +
793 files changed, 204295 insertions(+), 107778 deletions(-)
rename README => README.md (100%)
delete mode 100755 adios_config.flags.in
create mode 100755 adios_config.flags.makesrc.in
rename adios_config.in => adios_config.makesrc.in (78%)
delete mode 100644 config/ac_ncsu_timer.m4
delete mode 100755 config/ac_ridcompress.m4
create mode 100644 config/ac_zfp.m4
mode change 100755 => 100644 config/ltmain.sh
create mode 100755 config/test-driver
delete mode 100644 debian/patches/autotools-fixes.patch
create mode 100644 debian/patches/gcc6-fixes.patch
delete mode 100644 debian/patches/security.patch
delete mode 100644 debian/patches/sh4.patch
delete mode 100644 debian/patches/version-fix.patch
create mode 100644 examples/C/time_aggregation/CMakeLists.txt
create mode 100644 examples/C/time_aggregation/Makefile.am
copy examples/C/{global-array-time => time_aggregation}/Makefile.in (67%)
create mode 100644 examples/C/time_aggregation/time_aggregation.c
create mode 100644 examples/C/time_aggregation/time_aggregation.xml
create mode 100644 examples/C/time_aggregation/time_aggregation_no_xml.c
delete mode 100755 examples/staging/stage_write_varyingsize/genarray_varying
delete mode 100755 examples/staging/stage_write_varyingsize/stage_write
create mode 100644 src/core/a2sel.c
create mode 100644 src/core/a2sel.h
create mode 100644 src/core/adios_clock.c
create mode 100644 src/core/adios_clock.h
mode change 100644 => 100755 src/core/adios_internals.c
create mode 100644 src/core/adios_transform_methods.c
create mode 100644 src/core/strutil.c
create mode 100644 src/core/strutil.h
create mode 100644 src/core/types.h
create mode 100644 src/core/util_mpi.c
create mode 100644 src/core/util_mpi.h
create mode 100644 src/mxml/CMakeLists.txt
create mode 100644 src/mxml/Makefile.am
create mode 100644 src/mxml/Makefile.in
create mode 100644 src/mxml/cmake_try_longlong.c
create mode 100644 src/mxml/config.h
create mode 100644 src/mxml/mxml-2.9/ANNOUNCEMENT
create mode 100644 src/mxml/mxml-2.9/CHANGES
create mode 100644 src/mxml/mxml-2.9/COPYING
create mode 100644 src/mxml/mxml-2.9/Makefile.in
create mode 100644 src/mxml/mxml-2.9/README
create mode 100644 src/mxml/mxml-2.9/config.h.in
create mode 100755 src/mxml/mxml-2.9/configure
create mode 100644 src/mxml/mxml-2.9/configure.in
create mode 100644 src/mxml/mxml-2.9/doc/0.gif
create mode 100644 src/mxml/mxml-2.9/doc/1.gif
create mode 100644 src/mxml/mxml-2.9/doc/2.gif
create mode 100644 src/mxml/mxml-2.9/doc/3.gif
create mode 100644 src/mxml/mxml-2.9/doc/4.gif
create mode 100644 src/mxml/mxml-2.9/doc/5.gif
create mode 100644 src/mxml/mxml-2.9/doc/6.gif
create mode 100644 src/mxml/mxml-2.9/doc/7.gif
create mode 100644 src/mxml/mxml-2.9/doc/8.gif
create mode 100644 src/mxml/mxml-2.9/doc/9.gif
create mode 100644 src/mxml/mxml-2.9/doc/A.gif
create mode 100644 src/mxml/mxml-2.9/doc/B.gif
create mode 100644 src/mxml/mxml-2.9/doc/C.gif
create mode 100644 src/mxml/mxml-2.9/doc/D.gif
create mode 100644 src/mxml/mxml-2.9/doc/E.gif
create mode 100644 src/mxml/mxml-2.9/doc/F.gif
create mode 100644 src/mxml/mxml-2.9/doc/advanced.html
create mode 100644 src/mxml/mxml-2.9/doc/basics.html
create mode 100644 src/mxml/mxml-2.9/doc/chapters.xcf.gz
create mode 100644 src/mxml/mxml-2.9/doc/docset.css
create mode 100644 src/mxml/mxml-2.9/doc/docset.header
create mode 100644 src/mxml/mxml-2.9/doc/docset.intro
create mode 100644 src/mxml/mxml-2.9/doc/footer.man
create mode 100644 src/mxml/mxml-2.9/doc/install.html
create mode 100644 src/mxml/mxml-2.9/doc/intro.html
create mode 100644 src/mxml/mxml-2.9/doc/intro.man
create mode 100644 src/mxml/mxml-2.9/doc/license.html
create mode 100644 src/mxml/mxml-2.9/doc/logo.gif
create mode 100644 src/mxml/mxml-2.9/doc/logo.xcf.gz
create mode 100755 src/mxml/mxml-2.9/doc/makedocs.sh
create mode 100644 src/mxml/mxml-2.9/doc/mxml.book
create mode 100644 src/mxml/mxml-2.9/doc/mxml.html
create mode 100644 src/mxml/mxml-2.9/doc/mxmldoc.html
create mode 100644 src/mxml/mxml-2.9/doc/mxmldoc.man
create mode 100644 src/mxml/mxml-2.9/doc/mxmldoc.xsd
create mode 100644 src/mxml/mxml-2.9/doc/reference.heading
create mode 100644 src/mxml/mxml-2.9/doc/reference.html
create mode 100644 src/mxml/mxml-2.9/doc/relnotes.html
create mode 100644 src/mxml/mxml-2.9/doc/schema.html
create mode 100644 src/mxml/mxml-2.9/doc/title.html
create mode 100755 src/mxml/mxml-2.9/install-sh
create mode 100644 src/mxml/mxml-2.9/mxml-attr.c
create mode 100644 src/mxml/mxml-2.9/mxml-entity.c
create mode 100644 src/mxml/mxml-2.9/mxml-file.c
create mode 100644 src/mxml/mxml-2.9/mxml-get.c
create mode 100644 src/mxml/mxml-2.9/mxml-index.c
create mode 100644 src/mxml/mxml-2.9/mxml-node.c
create mode 100644 src/mxml/mxml-2.9/mxml-private.c
create mode 100644 src/mxml/mxml-2.9/mxml-private.h
create mode 100644 src/mxml/mxml-2.9/mxml-search.c
create mode 100644 src/mxml/mxml-2.9/mxml-set.c
create mode 100644 src/mxml/mxml-2.9/mxml-string.c
create mode 100644 src/mxml/mxml-2.9/mxml.h
create mode 100644 src/mxml/mxml-2.9/mxml.list.in
create mode 100644 src/mxml/mxml-2.9/mxml.pc.in
create mode 100644 src/mxml/mxml-2.9/mxml.spec
create mode 100644 src/mxml/mxml-2.9/mxml.xml
create mode 100644 src/mxml/mxml-2.9/mxmldoc.c
create mode 100644 src/mxml/mxml-2.9/test.xml
create mode 100644 src/mxml/mxml-2.9/test/class.cxx
create mode 100755 src/mxml/mxml-2.9/test/dotest.sh
create mode 100644 src/mxml/mxml-2.9/test/enum.cxx
create mode 100644 src/mxml/mxml-2.9/test/function.cxx
create mode 100644 src/mxml/mxml-2.9/test/functype.cxx
create mode 100644 src/mxml/mxml-2.9/test/struct.cxx
create mode 100644 src/mxml/mxml-2.9/test/type.cxx
create mode 100644 src/mxml/mxml-2.9/testmxml.c
create mode 100644 src/mxml/mxml-2.9/vcnet/config.h
create mode 100644 src/mxml/mxml-2.9/vcnet/mxml.sln
create mode 100644 src/mxml/mxml-2.9/vcnet/mxml1.def
create mode 100644 src/mxml/mxml-2.9/vcnet/mxml1.vcproj
create mode 100644 src/mxml/mxml-2.9/vcnet/mxmldoc.vcproj
create mode 100644 src/mxml/mxml-2.9/vcnet/testmxml.vcproj
delete mode 100644 src/nssi/adios_nssi_args.x
delete mode 100644 src/nssi/adios_nssi_config.c
delete mode 100644 src/nssi/adios_nssi_config.h
delete mode 100644 src/nssi/adios_nssi_filter.c
delete mode 100644 src/nssi/aggregation.cpp
delete mode 100644 src/nssi/aggregation.h
delete mode 100644 src/nssi/io_timer.h
delete mode 100644 src/nssi/nssi_coupling_server.cpp
delete mode 100644 src/nssi/nssi_staging_server.cpp
create mode 100644 src/public/adios_transform_methods.h
create mode 100644 src/query/common_query_read.c
create mode 100644 src/query/query_minmax.c
delete mode 100644 src/read/read_datatap.c
delete mode 100644 src/read/read_nssi.c
create mode 100644 src/transforms/adios_transform_zfp_common.h
create mode 100755 src/transforms/adios_transform_zfp_read.c
create mode 100755 src/transforms/adios_transform_zfp_write.c
delete mode 100644 src/write/adios_datatap.c
delete mode 100644 src/write/adios_nssi.c
delete mode 100644 src/write/adios_posix1.c
create mode 100644 src/zfp/CMakeLists.txt
create mode 100644 src/zfp/Makefile.am
create mode 100644 src/zfp/Makefile.in
create mode 100644 src/zfp/zfp-0.5.0/API
create mode 100644 src/zfp/zfp-0.5.0/Config
create mode 100644 src/zfp/zfp-0.5.0/FAQ
create mode 100644 src/zfp/zfp-0.5.0/LICENSE
create mode 100644 src/zfp/zfp-0.5.0/Makefile
create mode 100644 src/zfp/zfp-0.5.0/README
create mode 100644 src/zfp/zfp-0.5.0/VERSIONS
create mode 100644 src/zfp/zfp-0.5.0/array/cache.h
create mode 100644 src/zfp/zfp-0.5.0/array/memory.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfparray.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfparray1.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfparray2.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfparray3.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfpcodec.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfpcodecd.h
create mode 100644 src/zfp/zfp-0.5.0/array/zfpcodecf.h
create mode 100644 src/zfp/zfp-0.5.0/examples/Makefile
create mode 100644 src/zfp/zfp-0.5.0/examples/array2d.h
create mode 100644 src/zfp/zfp-0.5.0/examples/diffusion.cpp
create mode 100644 src/zfp/zfp-0.5.0/examples/fields.c
create mode 100644 src/zfp/zfp-0.5.0/examples/fields.h
create mode 100644 src/zfp/zfp-0.5.0/examples/pgm.c
create mode 100644 src/zfp/zfp-0.5.0/examples/simple.c
create mode 100644 src/zfp/zfp-0.5.0/examples/speed.c
create mode 100644 src/zfp/zfp-0.5.0/examples/testzfp.cpp
create mode 100644 src/zfp/zfp-0.5.0/examples/zfp.c
create mode 100644 src/zfp/zfp-0.5.0/inc/bitstream.h
create mode 100644 src/zfp/zfp-0.5.0/inc/macros.h
create mode 100644 src/zfp/zfp-0.5.0/inc/system.h
create mode 100644 src/zfp/zfp-0.5.0/inc/types.h
create mode 100644 src/zfp/zfp-0.5.0/inc/zfp.h
create mode 100644 src/zfp/zfp-0.5.0/src/Makefile
create mode 100644 src/zfp/zfp-0.5.0/src/bitstream.c
create mode 100644 src/zfp/zfp-0.5.0/src/block1.h
create mode 100644 src/zfp/zfp-0.5.0/src/block2.h
create mode 100644 src/zfp/zfp-0.5.0/src/block3.h
create mode 100644 src/zfp/zfp-0.5.0/src/decode1d.c
create mode 100644 src/zfp/zfp-0.5.0/src/decode1f.c
create mode 100644 src/zfp/zfp-0.5.0/src/decode2d.c
create mode 100644 src/zfp/zfp-0.5.0/src/decode2f.c
create mode 100644 src/zfp/zfp-0.5.0/src/decode3d.c
create mode 100644 src/zfp/zfp-0.5.0/src/decode3f.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode1d.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode1f.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode2d.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode2f.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode3d.c
create mode 100644 src/zfp/zfp-0.5.0/src/encode3f.c
create mode 100644 src/zfp/zfp-0.5.0/src/inline/bitstream.c
create mode 100644 src/zfp/zfp-0.5.0/src/inline/inline.h
create mode 100644 src/zfp/zfp-0.5.0/src/template/codec.h
create mode 100644 src/zfp/zfp-0.5.0/src/template/codec1.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/codec2.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/codec3.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/compress.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/decode.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/decode1.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/decode2.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/decode3.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/decompress.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/encode.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/encode1.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/encode2.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/encode3.c
create mode 100644 src/zfp/zfp-0.5.0/src/template/template.h
create mode 100644 src/zfp/zfp-0.5.0/src/traitsd.h
create mode 100644 src/zfp/zfp-0.5.0/src/traitsf.h
create mode 100644 src/zfp/zfp-0.5.0/src/zfp.c
create mode 100644 tests/C/query/alacrity/DS1/DS1-inputs.xml
create mode 100644 tests/C/query/alacrity/DS1/DS1-notrans.xml
create mode 100644 tests/C/query/alacrity/DS1/DS1.xml
create mode 100644 tests/C/query/alacrity/DS2/DS2-inputs.xml
create mode 100644 tests/C/query/alacrity/DS2/DS2-notrans.xml
create mode 100644 tests/C/query/alacrity/DS2/DS2.xml
create mode 100644 tests/C/query/alacrity/DS3/DS3-inputs-3.xml
create mode 100644 tests/C/query/alacrity/DS3/DS3-inputs-WB.xml
create mode 100644 tests/C/query/alacrity/DS3/DS3-inputs.xml
create mode 100644 tests/C/query/alacrity/DS3/DS3.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-1var-no-transform.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-1var.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-2var-no-transform.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-2var-pfd.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-2var.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-gen-1var-1D.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity-gen-1var.xml
create mode 100644 tests/C/query/alacrity/xml/xml/alacrity.xml
create mode 100644 tests/C/query/alacrity/xml/xml/build-alac-index-inputs.xml
create mode 100644 tests/C/query/fastbit/query.xml
rename tests/C/query/query-xmls/DS-1D/{query0.xml => DS-1D.query0.xml} (100%)
rename tests/C/query/query-xmls/DS-1D/{query1.xml => DS-1D.query1.xml} (100%)
rename tests/C/query/query-xmls/DS-2D/{query0.xml => DS-2D.query0.xml} (100%)
rename tests/C/query/query-xmls/DS-2D/{query1.xml => DS-2D.query1.xml} (100%)
rename tests/C/query/query-xmls/DS-3D/{query-wb0.xml => DS-3D.query-wb0.xml} (100%)
rename tests/C/query/query-xmls/DS-3D/{query-wb1.xml => DS-3D.query-wb1.xml} (100%)
rename tests/C/query/query-xmls/DS-3D/{query0.xml => DS-3D.query0.xml} (100%)
rename tests/C/query/query-xmls/DS-3D/{query1.xml => DS-3D.query1.xml} (100%)
rename tests/C/query/query-xmls/DS-particle/{DS-particle-query0.xml => DS-particle.query0.xml} (100%)
rename tests/C/query/query-xmls/DS-particle/{DS-particle-query1.xml => DS-particle.query1.xml} (100%)
rename tests/C/query/query-xmls/DS-unevenpg/{query0.xml => DS-unevenpg.query0.xml} (100%)
rename tests/C/query/query-xmls/DS-unevenpg/{query1.xml => DS-unevenpg.query1.xml} (100%)
copy tests/suite/programs/examples/global_array_time/{global_array_time_C.xml => global_array_time_aggr_C.xml} (90%)
create mode 100644 tests/test_src/CMakeLists.txt
create mode 100644 tests/test_src/Makefile.am
create mode 100644 tests/test_src/Makefile.in
create mode 100644 tests/test_src/array_attribute.c
rename tests/{suite/programs => test_src}/copy_subvolume.c (100%)
rename tests/{suite/programs => test_src}/group_free_test.c (96%)
rename tests/{suite/programs => test_src}/hashtest.c (100%)
create mode 100644 tests/test_src/points_1DtoND.c
create mode 100644 tests/test_src/query_minmax.c
create mode 100644 tests/test_src/read_points_2d.c
create mode 100644 tests/test_src/selection_api.F90
create mode 100644 tests/test_src/test_strutil.c
create mode 100644 tests/test_src/text_to_pairstruct.c
rename tests/{suite/programs => test_src}/transforms_specparse.c (100%)
create mode 100644 tests/test_src/trim_spaces.c
create mode 100644 utils/adios_list_methods/CMakeLists.txt
create mode 100644 utils/adios_list_methods/Makefile.am
rename utils/{list_methods => adios_list_methods}/Makefile.in (52%)
create mode 100644 utils/adios_list_methods/adios_list_methods.c
copy utils/gpp/{gpp.py => gpp.py.in} (92%)
delete mode 100644 utils/list_methods/CMakeLists.txt
delete mode 100644 utils/list_methods/Makefile.am
delete mode 100644 utils/list_methods/list_methods.c
rename utils/skel/bin/{set_method.sh => skel_set_method.sh} (100%)
delete mode 100644 wrappers/matlab/posix_method.bp
delete mode 100644 wrappers/matlab/posix_method.bp.dir/posix_method.bp.0
delete mode 120000 wrappers/matlab/two_groups19.bp
delete mode 120000 wrappers/matlab/xgc.diagnosis.bp
create mode 100644 wrappers/numpy/DEVELOPER
copy wrappers/numpy/{conf => _hl}/__init__.py (100%)
create mode 100644 wrappers/numpy/_hl/selections.py
create mode 100755 wrappers/numpy/build-and-install.sh
create mode 100644 wrappers/numpy/example/staging/adios_read_mpi.py
create mode 100644 wrappers/numpy/example/staging/adios_write_mpi.py
create mode 100644 wrappers/numpy/example/staging/job.pbs
create mode 100644 wrappers/numpy/mpi-compat.h
create mode 100644 wrappers/numpy/src/__init__.py
create mode 100644 wrappers/numpy/src_mpi/__init__.py
create mode 100644 wrappers/numpy/test/README
copy wrappers/numpy/{conf => test}/__init__.py (100%)
create mode 100644 wrappers/numpy/test/test_adios_group_unittest.py
copy wrappers/numpy/test/{test_adios_unittest.py => test_adios_prefix_unittest.py} (54%)
create mode 100644 wrappers/numpy/test/test_selections.py
create mode 100644 wrappers/numpy/tests/test_adios_attribute.py
create mode 100755 wrappers/numpy/uninstal-adios-modules.sh
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/adios.git
More information about the debian-science-commits
mailing list