[adios] 02/07: Merge tag 'upstream/1.11.0' into debian/master
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Apr 4 12:09:18 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a commit to branch debian/master
in repository adios.
commit 22d24d5b1b32627f0c769713a5bb9154c0742e4e
Merge: cc9de75 0c48e54
Author: Alastair McKinstry <mckinstry at debian.org>
Date: Mon Nov 21 13:09:40 2016 +0000
Merge tag 'upstream/1.11.0' into debian/master
CMakeLists.txt | 73 +
COPYING | 14 +-
Makefile.in | 5 +-
NEWS | 21 +
aclocal.m4 | 1 +
cmake_init | 15 +-
config.h.in | 12 +
config/ac_dataspaces.m4 | 54 +-
config/ac_dimes.m4 | 47 +-
config/ac_zfp.m4 | 83 +
configure | 839 +-
configure.ac | 58 +-
examples/C/CMakeLists.txt | 2 +-
examples/C/Makefile.am | 4 +-
examples/C/Makefile.in | 10 +-
examples/C/arrays/Makefile.in | 5 +-
examples/C/attributes/Makefile.in | 5 +-
examples/C/flexpath_arrays/Makefile.in | 5 +-
.../global_range_select/Makefile.in | 5 +-
.../C/flexpath_arrays/process_select/Makefile.in | 5 +-
examples/C/global-array-time/Makefile.in | 5 +-
examples/C/global-array-time/adios_globaltime.c | 89 +-
examples/C/global-array-time/adios_globaltime.xml | 7 +-
.../C/global-array-time/adios_globaltime_no_xml.c | 4 +-
examples/C/global-array/Makefile.in | 5 +-
.../global-array/adios_global_aggregate_by_color.c | 2 +-
examples/C/global-array/adios_global_no_xml.c | 95 +-
examples/C/global-array/no_xml_write_byid.c | 2 +-
examples/C/icee_arrays/Makefile.in | 5 +-
examples/C/icee_arrays/array/Makefile.in | 5 +-
examples/C/icee_arrays/array/adios_write.c | 2 +-
examples/C/manual/Makefile.in | 5 +-
examples/C/query/Makefile.in | 5 +-
examples/C/query/write_table.c | 2 +-
examples/C/query/write_vars.c | 2 +-
examples/C/read_all/Makefile.in | 5 +-
examples/C/scalars/Makefile.in | 5 +-
examples/C/schema/Makefile.in | 5 +-
examples/C/schema/rectilinear2d_noxml.c | 2 +-
examples/C/schema/structured2d_noxml.c | 2 +-
examples/C/schema/tri2d_noxml.c | 2 +-
examples/C/schema/uniform2d_noxml.c | 2 +-
examples/C/stat/Makefile.in | 5 +-
examples/C/time_aggregation/CMakeLists.txt | 24 +
examples/C/time_aggregation/Makefile.am | 23 +
.../C/{attributes => time_aggregation}/Makefile.in | 72 +-
examples/C/time_aggregation/time_aggregation.c | 111 +
examples/C/time_aggregation/time_aggregation.xml | 45 +
.../C/time_aggregation/time_aggregation_no_xml.c | 158 +
examples/C/transforms/Makefile.in | 5 +-
examples/Fortran/Makefile.in | 5 +-
examples/Fortran/arrays/Makefile.in | 5 +-
examples/Fortran/global-array-time/Makefile.in | 5 +-
examples/Fortran/global-array/Makefile.in | 5 +-
.../Fortran/global-array/adios_global_no_xml.F90 | 3 +-
.../Fortran/global-array/no_xml_write_byid.F90 | 2 +-
examples/Fortran/scalars/Makefile.in | 5 +-
examples/Fortran/schema/Makefile.in | 5 +-
examples/Fortran/schema/rectilinear2d_noxml.F90 | 2 +-
examples/Fortran/schema/structured2d_noxml.F90 | 2 +-
examples/Fortran/schema/tri2d_noxml.F90 | 2 +-
examples/Fortran/schema/tri2d_noxml_seperate.F90 | 4 +-
examples/Fortran/schema/uniform2d_noxml.F90 | 2 +-
examples/Makefile.in | 5 +-
runconf | 50 +-
src/CMakeLists.txt | 69 +-
src/Makefile.am | 69 +-
src/Makefile.in | 383 +-
src/core/adios.c | 77 +-
src/core/adios_bp_v1.c | 1 +
src/core/adios_bp_v1.h | 1 +
src/core/adios_clock.h | 2 +-
src/core/adios_icee.h | 2 +
src/core/adios_internals.c | 741 +-
src/core/adios_internals.h | 116 +-
src/core/adios_internals_mxml.c | 130 +-
src/core/adios_read.c | 3 +-
src/core/adios_transform_methods.c | 59 +
src/core/adiosf.c | 31 +-
src/core/adiosf_defs_mod.f90 | 8 +
src/core/adiosf_write_mod.f90 | 6812 +++++-----
src/core/bp_utils.c | 4 +-
src/core/bp_utils.h | 2 +-
src/core/buffer.c | 12 +
src/core/common_adios.c | 655 +-
src/core/common_adios.h | 2 +-
src/core/common_read.c | 57 +-
src/core/common_read.h | 2 +-
src/core/flexpath.h | 1 +
src/core/mpidummy.c | 22 +
src/mxml/Makefile.am | 2 +-
src/mxml/Makefile.in | 7 +-
src/public/adios.h | 24 +-
src/public/adios_error.h | 1 +
src/public/adios_query.h | 15 +
src/public/adios_read_v2.h | 17 +-
src/public/adios_transform_methods.h | 25 +
src/public/adios_types.h | 9 +
src/public/adios_version.h | 6 +-
src/public/mpidummy.h | 10 +-
src/query/common_query.c | 58 +
src/read/read_flexpath.c | 83 +-
src/read/read_icee.c | 323 +-
src/transforms/Makefile.plugins | 4 +
src/transforms/adios_transform_zfp_common.h | 235 +
src/transforms/adios_transform_zfp_read.c | 223 +
src/transforms/adios_transform_zfp_write.c | 268 +
src/transforms/transform_plugins.h | 1 +
src/write/adios_dataspaces.c | 2 +-
src/write/adios_flexpath.c | 138 +-
src/write/adios_icee.c | 300 +-
src/write/adios_mpi.c | 32 +-
src/write/adios_mpi_amr.c | 89 +-
src/write/adios_mpi_lustre.c | 3 -
src/write/adios_posix.c | 12 +-
src/write/adios_var_merge.c | 7 +-
src/zfp/CMakeLists.txt | 40 +
src/zfp/Makefile.am | 61 +
src/{mxml => zfp}/Makefile.in | 296 +-
src/zfp/zfp-0.5.0/API | 439 +
src/zfp/zfp-0.5.0/Config | 49 +
src/zfp/zfp-0.5.0/FAQ | 371 +
src/zfp/zfp-0.5.0/LICENSE | 57 +
src/zfp/zfp-0.5.0/Makefile | 16 +
src/zfp/zfp-0.5.0/README | 422 +
src/zfp/zfp-0.5.0/VERSIONS | 161 +
src/zfp/zfp-0.5.0/array/cache.h | 224 +
src/zfp/zfp-0.5.0/array/memory.h | 42 +
src/zfp/zfp-0.5.0/array/zfparray.h | 105 +
src/zfp/zfp-0.5.0/array/zfparray1.h | 243 +
src/zfp/zfp-0.5.0/array/zfparray2.h | 273 +
src/zfp/zfp-0.5.0/array/zfparray3.h | 284 +
src/zfp/zfp-0.5.0/array/zfpcodec.h | 17 +
src/zfp/zfp-0.5.0/array/zfpcodecd.h | 149 +
src/zfp/zfp-0.5.0/array/zfpcodecf.h | 149 +
src/zfp/zfp-0.5.0/examples/Makefile | 35 +
src/zfp/zfp-0.5.0/examples/array2d.h | 25 +
src/zfp/zfp-0.5.0/examples/diffusion.cpp | 107 +
src/zfp/zfp-0.5.0/examples/fields.c | 12201 +++++++++++++++++
src/zfp/zfp-0.5.0/examples/fields.h | 20 +
src/zfp/zfp-0.5.0/examples/pgm.c | 112 +
src/zfp/zfp-0.5.0/examples/simple.c | 99 +
src/zfp/zfp-0.5.0/examples/speed.c | 136 +
src/zfp/zfp-0.5.0/examples/testzfp.cpp | 705 +
src/zfp/zfp-0.5.0/examples/zfp.c | 480 +
src/zfp/zfp-0.5.0/inc/bitstream.h | 87 +
src/zfp/zfp-0.5.0/inc/macros.h | 7 +
src/zfp/zfp-0.5.0/inc/system.h | 20 +
src/zfp/zfp-0.5.0/inc/types.h | 30 +
src/zfp/zfp-0.5.0/inc/zfp.h | 549 +
src/zfp/zfp-0.5.0/src/Makefile | 21 +
src/zfp/zfp-0.5.0/src/bitstream.c | 4 +
src/zfp/zfp-0.5.0/src/block1.h | 1 +
src/zfp/zfp-0.5.0/src/block2.h | 1 +
src/zfp/zfp-0.5.0/src/block3.h | 1 +
src/zfp/zfp-0.5.0/src/decode1d.c | 10 +
src/zfp/zfp-0.5.0/src/decode1f.c | 10 +
src/zfp/zfp-0.5.0/src/decode2d.c | 10 +
src/zfp/zfp-0.5.0/src/decode2f.c | 10 +
src/zfp/zfp-0.5.0/src/decode3d.c | 10 +
src/zfp/zfp-0.5.0/src/decode3f.c | 10 +
src/zfp/zfp-0.5.0/src/encode1d.c | 10 +
src/zfp/zfp-0.5.0/src/encode1f.c | 10 +
src/zfp/zfp-0.5.0/src/encode2d.c | 10 +
src/zfp/zfp-0.5.0/src/encode2f.c | 10 +
src/zfp/zfp-0.5.0/src/encode3d.c | 10 +
src/zfp/zfp-0.5.0/src/encode3f.c | 10 +
src/zfp/zfp-0.5.0/src/inline/bitstream.c | 410 +
src/zfp/zfp-0.5.0/src/inline/inline.h | 12 +
src/zfp/zfp-0.5.0/src/template/codec.h | 3 +
src/zfp/zfp-0.5.0/src/template/codec1.c | 11 +
src/zfp/zfp-0.5.0/src/template/codec2.c | 39 +
src/zfp/zfp-0.5.0/src/template/codec3.c | 97 +
src/zfp/zfp-0.5.0/src/template/compress.c | 104 +
src/zfp/zfp-0.5.0/src/template/decode.c | 165 +
src/zfp/zfp-0.5.0/src/template/decode1.c | 55 +
src/zfp/zfp-0.5.0/src/template/decode2.c | 62 +
src/zfp/zfp-0.5.0/src/template/decode3.c | 70 +
src/zfp/zfp-0.5.0/src/template/decompress.c | 104 +
src/zfp/zfp-0.5.0/src/template/encode.c | 216 +
src/zfp/zfp-0.5.0/src/template/encode1.c | 55 +
src/zfp/zfp-0.5.0/src/template/encode2.c | 65 +
src/zfp/zfp-0.5.0/src/template/encode3.c | 77 +
src/zfp/zfp-0.5.0/src/template/template.h | 12 +
src/zfp/zfp-0.5.0/src/traitsd.h | 11 +
src/zfp/zfp-0.5.0/src/traitsf.h | 17 +
src/zfp/zfp-0.5.0/src/zfp.c | 719 +
tests/C/Makefile.in | 5 +-
tests/C/fgr_tests/Makefile.in | 5 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 5 +-
tests/C/flexpath_tests/1D_arr_global/reader.c | 6 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 5 +-
.../C/flexpath_tests/1D_arr_global_noxml/writer.c | 4 +-
tests/C/flexpath_tests/Makefile.in | 5 +-
.../flexpath_tests/global_range_select/Makefile.in | 5 +-
tests/C/flexpath_tests/maya_append/Makefile.in | 5 +-
tests/C/flexpath_tests/maya_append/writer.c | 2 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 5 +-
tests/C/flexpath_tests/maya_noxml/writer.c | 2 +-
tests/C/flexpath_tests/scalar/Makefile.in | 5 +-
tests/C/flexpath_tests/scalar/writer.c | 2 +-
tests/C/query/Makefile.in | 5 +-
tests/C/query/alacrity/Makefile.in | 5 +-
tests/C/query/common/Makefile.in | 5 +-
tests/C/query/fastbit/Makefile.in | 5 +-
tests/Fortran/Makefile.in | 5 +-
tests/Makefile.in | 5 +-
tests/bp_read/Makefile.in | 5 +-
tests/genarray/Makefile.in | 5 +-
tests/suite/Makefile.in | 5 +-
tests/suite/programs/Makefile.in | 5 +-
tests/suite/programs/big_file.c | 2 +-
tests/suite/programs/blocks.c | 2 +-
tests/suite/programs/connect_to_space_subset.c | 2 +-
tests/suite/programs/examples/Makefile.in | 5 +-
.../suite/programs/examples/attributes/Makefile.in | 5 +-
.../programs/examples/global_array/Makefile.in | 5 +-
.../examples/global_array/global_array_F.xml | 2 +-
.../global_array_aggregate_by_color_C.c | 2 +-
.../global_array/global_array_write_byid_noxml_C.c | 2 +-
.../global_array_write_byid_noxml_F.F90 | 2 +-
.../global_array/global_array_write_noxml_C.c | 2 +-
.../global_array/global_array_write_noxml_F.F90 | 2 +-
.../examples/global_array_time/Makefile.am | 2 +-
.../examples/global_array_time/Makefile.in | 7 +-
.../global_array_time/global_array_time_aggr_C.xml | 3 +-
.../global_array_time/global_array_time_write_C.c | 84 +-
.../programs/examples/local_array/Makefile.in | 5 +-
tests/suite/programs/examples/scalars/Makefile.in | 5 +-
.../programs/examples/scalars/scalars_read_C.c | 28 +-
.../programs/examples/scalars/scalars_read_F.F90 | 30 +-
tests/suite/programs/many_vars.c | 2 +-
tests/suite/programs/reuse_dim.c | 2 +-
tests/suite/programs/selections.c | 2 +-
tests/suite/programs/steps_write.c | 2 +-
tests/suite/reference/attributes_bpls.txt | 2 +-
tests/suite/reference/global_array_no_xml_bpls.txt | 2 +-
.../suite/reference/global_array_no_xml_f_bpls.txt | 2 +-
tests/suite/reference/global_array_time_bpls.txt | 4 +-
tests/suite/reference/local_array_C_bpls.txt | 4 +-
tests/suite/reference/no_xml_write_byid_bpls.txt | 2 +-
tests/suite/reference/no_xml_write_byid_f_bpls.txt | 2 +-
tests/suite/test.sh | 17 +-
tests/suite/tests/01_scalars.sh | 4 +-
tests/suite/tests/05_global_array_time.sh | 53 +-
tests/suite/tests/19_query.sh | 9 +-
tests/test_src/CMakeLists.txt | 2 +-
tests/test_src/Makefile.am | 12 +-
tests/test_src/Makefile.in | 105 +-
tests/test_src/array_attribute.c | 327 +
tests/test_src/group_free_test.c | 2 +-
tests/test_src/query_minmax.c | 2 +-
tests/test_src/read_points_2d.c | 2 +-
tests/test_src/read_points_3d.c | 774 --
utils/Makefile.in | 5 +-
utils/adios_lint/Makefile.in | 5 +-
utils/adios_list_methods/Makefile.in | 5 +-
utils/adios_list_methods/adios_list_methods.c | 425 +-
utils/bp2ascii/Makefile.in | 5 +-
utils/bp2bp/Makefile.in | 5 +-
utils/bp2h5/Makefile.in | 5 +-
utils/bp2h5/bp2h5.c | 8 +-
utils/bp2ncd/Makefile.in | 5 +-
utils/bpdiff/Makefile.in | 5 +-
utils/bpdump/Makefile.in | 5 +-
utils/bpls/Makefile.in | 5 +-
utils/bpmeta/Makefile.in | 5 +-
utils/bprecover/Makefile.in | 5 +-
utils/bpsplit/Makefile.in | 5 +-
utils/fastbit/Makefile.in | 5 +-
utils/gpp/CMakeLists.txt | 3 +-
utils/gpp/Makefile.am | 7 +-
utils/gpp/Makefile.in | 62 +-
utils/gpp/gpp.py | 9 +-
utils/gpp/gpp.py.in | 7 +
utils/skel/CMakeLists.txt | 31 +-
utils/skel/Makefile.am | 2 +-
utils/skel/Makefile.in | 7 +-
.../skel/bin/{set_method.sh => skel_set_method.sh} | 0
utils/skel/etc/Makefile.in | 5 +-
utils/skel/etc/templates/Makefile.default.tpl | 2 +-
utils/skel/etc/templates/submit_jaguar.tpl | 2 +-
utils/skel/etc/templates/submit_nautilus.tmpl | 2 +-
utils/skel/etc/templates/submit_nautilus.tpl | 2 +-
utils/skel/etc/templates/submit_sith.tmpl | 2 +-
utils/skel/etc/templates/submit_sith.tpl | 2 +-
utils/skel/src/Makefile.in | 5 +-
utils/skeldump/Makefile.in | 5 +-
utils/skeldump/skeldump.c | 2 +-
wrappers/java/CMakeLists.txt | 6 +-
wrappers/java/gov/ornl/ccs/Adios.java | 8 +-
wrappers/java/gov_ornl_ccs_Adios.cxx | 40 +-
wrappers/java/test/AdiosNoxmlTest.java | 14 +-
wrappers/numpy/adios.cpp | 12949 +++++++++++-------
wrappers/numpy/adios.pyx | 288 +-
wrappers/numpy/adios_mpi.cpp | 13041 ++++++++++++-------
wrappers/numpy/adios_mpi.pyx | 288 +-
wrappers/numpy/build-and-install.sh | 14 +
wrappers/numpy/doc/source/build.rst | 24 +-
wrappers/numpy/src/__init__.py | 2 +-
wrappers/numpy/src_mpi/__init__.py | 2 +-
wrappers/numpy/test/test_adios_writer_unittest.py | 43 +
wrappers/numpy/tests/test_adios_attribute.py | 3 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 18 +-
wrappers/numpy/tests/test_adios_writer.py | 15 +-
305 files changed, 46943 insertions(+), 15799 deletions(-)
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