[getfem] 02/11: Refresh patches.

Anton Gladky gladk at moszumanska.debian.org
Mon Aug 14 22:09:47 UTC 2017


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gladk pushed a commit to annotated tag debian/5.2+dfsg1-1
in repository getfem.

commit 1b52fd2aa7bcfc0676a88af09ab844c02858b8d6
Author: Anton Gladky <gladk at debian.org>
Date:   Mon Aug 14 21:22:31 2017 +0200

    Refresh patches.
---
 debian/patches/04_fix_FTBFS.patch            |  6 ++--
 debian/patches/05_disable_failing_test.patch | 27 ++++++-----------
 debian/patches/06_gcc-6.patch                | 12 ++++----
 debian/patches/07_disable_scilab.patch       | 44 ++++++++--------------------
 4 files changed, 31 insertions(+), 58 deletions(-)

diff --git a/debian/patches/04_fix_FTBFS.patch b/debian/patches/04_fix_FTBFS.patch
index 4d2783f..923cf37 100644
--- a/debian/patches/04_fix_FTBFS.patch
+++ b/debian/patches/04_fix_FTBFS.patch
@@ -2,10 +2,10 @@ Description: Fix FTBFS
 Author: Anton Gladky <gladk at debian.org>
 Last-Update: <2016-04-15>
 
-Index: getfem-5.1/interface/src/gf_asm.cc
+Index: getfem-5.2/interface/src/gf_asm.cc
 ===================================================================
---- getfem-5.1.orig/interface/src/gf_asm.cc
-+++ getfem-5.1/interface/src/gf_asm.cc
+--- getfem-5.2.orig/interface/src/gf_asm.cc
++++ getfem-5.2/interface/src/gf_asm.cc
 @@ -218,7 +218,7 @@ void asm_stabilization_patch_matrix
  
    int nparts = 1;
diff --git a/debian/patches/05_disable_failing_test.patch b/debian/patches/05_disable_failing_test.patch
index 07c9e8d..ec11354 100644
--- a/debian/patches/05_disable_failing_test.patch
+++ b/debian/patches/05_disable_failing_test.patch
@@ -2,11 +2,11 @@ Description: Disable two failing tests
 Author: Anton Gladky <gladk at debian.org>
 Last-Update: 2016-08-25
 
-Index: getfem/tests/Makefile.am
+Index: getfem-5.2/tests/Makefile.am
 ===================================================================
---- getfem.orig/tests/Makefile.am
-+++ getfem/tests/Makefile.am
-@@ -28,22 +28,15 @@ check_PROGRAMS =                   \
+--- getfem-5.2.orig/tests/Makefile.am
++++ getfem-5.2/tests/Makefile.am
+@@ -45,22 +45,15 @@ check_PROGRAMS =                   \
  	test_interpolated_fem      \
  	test_range_basis           \
  	laplacian                  \
@@ -30,7 +30,7 @@ Index: getfem/tests/Makefile.am
  
  CLEANFILES = \
  	laplacian.res laplacian.mesh laplacian.dataelt 			    \
-@@ -65,14 +58,9 @@ test_kdtree_SOURCES = test_kdtree.cc
+@@ -82,14 +75,9 @@ test_kdtree_SOURCES = test_kdtree.cc
  test_rtree_SOURCES = test_rtree.cc
  test_assembly_SOURCES = test_assembly.cc
  laplacian_SOURCES = laplacian.cc
@@ -45,7 +45,7 @@ Index: getfem/tests/Makefile.am
  integration_SOURCES = integration.cc
  poly_SOURCES = poly.cc
  test_mesh_SOURCES = test_mesh.cc
-@@ -91,7 +79,6 @@ test_mesh_im_level_set_SOURCES = test_me
+@@ -108,7 +96,6 @@ test_mesh_im_level_set_SOURCES = test_me
  crack_SOURCES = crack.cc
  thermo_elasticity_electrical_coupling_SOURCES = thermo_elasticity_electrical_coupling.cc
  endif
@@ -53,7 +53,7 @@ Index: getfem/tests/Makefile.am
  heat_equation_SOURCES = heat_equation.cc
  wave_equation_SOURCES = wave_equation.cc
  cyl_slicer_SOURCES = cyl_slicer.cc
-@@ -120,21 +107,13 @@ TESTS = \
+@@ -137,21 +124,13 @@ TESTS = \
  	test_interpolated_fem.pl      \
  	test_range_basis.pl           \
  	laplacian.pl                  \
@@ -75,7 +75,7 @@ Index: getfem/tests/Makefile.am
  	cyl_slicer.pl	              \
  	make_gmm_test.pl
  
-@@ -147,10 +126,7 @@ EXTRA_DIST =
+@@ -164,10 +143,7 @@ EXTRA_DIST =
  	test_interpolation.pl              			\
  	test_assembly.pl                   			\
  	laplacian.pl                       			\
@@ -86,7 +86,7 @@ Index: getfem/tests/Makefile.am
  	integration.pl                     			\
  	poly.pl                            			\
  	test_mesh.pl                       			\
-@@ -167,25 +143,15 @@ EXTRA_DIST =
+@@ -184,25 +160,15 @@ EXTRA_DIST =
  	crack.pl                           			\
  	crack.param                        			\
  	laplacian.param                    			\
@@ -112,12 +112,3 @@ Index: getfem/tests/Makefile.am
  	geo_trans_inv.param                			\
  	heat_equation.pl                   			\
  	heat_equation.param                			\
-Index: getfem/contrib/Makefile.am
-===================================================================
---- getfem.orig/contrib/Makefile.am
-+++ getfem/contrib/Makefile.am
-@@ -1,3 +1,3 @@
- SUBDIRS = icare delaminated_crack aposteriori xfem_stab_unilat_contact      \
- 	  bimaterial_crack_test mixed_elastostatic xfem_contact crack_plate \
--	  static_contact_gears level_set_contact test_plasticity
-+	  static_contact_gears
diff --git a/debian/patches/06_gcc-6.patch b/debian/patches/06_gcc-6.patch
index 511f732..4d686ec 100644
--- a/debian/patches/06_gcc-6.patch
+++ b/debian/patches/06_gcc-6.patch
@@ -2,10 +2,10 @@ Description: Fix FTBFS with gcc-6
 Author: Anton Gladky <gladk at debian.org>
 Last-Update: 2016-08-08
 
-Index: getfem-5.1/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
+Index: getfem-5.2/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
 ===================================================================
---- getfem-5.1.orig/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
-+++ getfem-5.1/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
+--- getfem-5.2.orig/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
++++ getfem-5.2/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
 @@ -43,7 +43,7 @@
  #include "getfem/getfem_interpolated_fem.h"
  
@@ -15,10 +15,10 @@ Index: getfem-5.1/contrib/bimaterial_crack_test/bimaterial_crack_test.cc
  
  
  /* some GetFEM++ types that we will be using */
-Index: getfem-5.1/contrib/bimaterial_crack_test/crack_exact_solution.h
+Index: getfem-5.2/contrib/bimaterial_crack_test/crack_exact_solution.h
 ===================================================================
---- getfem-5.1.orig/contrib/bimaterial_crack_test/crack_exact_solution.h
-+++ getfem-5.1/contrib/bimaterial_crack_test/crack_exact_solution.h
+--- getfem-5.2.orig/contrib/bimaterial_crack_test/crack_exact_solution.h
++++ getfem-5.2/contrib/bimaterial_crack_test/crack_exact_solution.h
 @@ -32,7 +32,7 @@
  #include "getfem/getfem_mesh_fem_global_function.h"
  
diff --git a/debian/patches/07_disable_scilab.patch b/debian/patches/07_disable_scilab.patch
index e4d3c3c..d0da6cc 100644
--- a/debian/patches/07_disable_scilab.patch
+++ b/debian/patches/07_disable_scilab.patch
@@ -2,29 +2,11 @@ Description: Disable scilab
 Author: Anton Gladky <gladk at debian.org>
 Last-Update: 2016-08-08
 
-Index: getfem++-5.1+dfsg1/interface/src/Makefile.am
+Index: getfem-5.2/m4/Makefile.in
 ===================================================================
---- getfem++-5.1+dfsg1.orig/interface/src/Makefile.am
-+++ getfem++-5.1+dfsg1/interface/src/Makefile.am
-@@ -6,12 +6,7 @@ if BUILDPYTHON
- subdirPYTHON=python
- endif
- 
--if BUILDSCILAB
--subdirSCILAB=scilab
--.NOTPARALLEL: scilab
--endif
--
--SUBDIRS = . $(subdirMATLAB) $(subdirPYTHON) $(subdirSCILAB)
-+SUBDIRS = . $(subdirMATLAB) $(subdirPYTHON)
- 
- RPC_INC_DIR=@RPC_INC_DIR@
- 
-Index: getfem++-5.1+dfsg1/m4/Makefile.in
-===================================================================
---- getfem++-5.1+dfsg1.orig/m4/Makefile.in
-+++ getfem++-5.1+dfsg1/m4/Makefile.in
-@@ -100,7 +100,7 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/a
+--- getfem-5.2.orig/m4/Makefile.in
++++ getfem-5.2/m4/Makefile.in
+@@ -109,7 +109,7 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/a
  	$(top_srcdir)/m4/ax_prog_fc_mpi.m4 $(top_srcdir)/m4/libtool.m4 \
  	$(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
  	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
@@ -32,8 +14,8 @@ Index: getfem++-5.1+dfsg1/m4/Makefile.in
 +	$(top_srcdir)/configure.ac
  am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
  	$(ACLOCAL_M4)
- DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
-@@ -173,12 +173,9 @@ FC = @FC@
+ mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
+@@ -180,12 +180,9 @@ FC = @FC@
  FCFLAGS = @FCFLAGS@
  FCLIBS = @FCLIBS@
  FGREP = @FGREP@
@@ -46,7 +28,7 @@ Index: getfem++-5.1+dfsg1/m4/Makefile.in
  IM_METHODS = @IM_METHODS@
  IM_METHODS_LOC = @IM_METHODS_LOC@
  INSTALL = @INSTALL@
-@@ -242,13 +239,6 @@ QHULL_LIBS = @QHULL_LIBS@
+@@ -250,13 +247,6 @@ QHULL_LIBS = @QHULL_LIBS@
  RANLIB = @RANLIB@
  RPC_INC_DIR = @RPC_INC_DIR@
  RPC_LIB = @RPC_LIB@
@@ -60,7 +42,7 @@ Index: getfem++-5.1+dfsg1/m4/Makefile.in
  SED = @SED@
  SET_MAKE = @SET_MAKE@
  SHELL = @SHELL@
-@@ -286,7 +276,6 @@ datarootdir = @datarootdir@
+@@ -294,7 +284,6 @@ datarootdir = @datarootdir@
  docdir = @docdir@
  dvidir = @dvidir@
  exec_prefix = @exec_prefix@
@@ -68,11 +50,11 @@ Index: getfem++-5.1+dfsg1/m4/Makefile.in
  host = @host@
  host_alias = @host_alias@
  host_cpu = @host_cpu@
-Index: getfem++-5.1+dfsg1/configure.ac
+Index: getfem-5.2/configure.ac
 ===================================================================
---- getfem++-5.1+dfsg1.orig/configure.ac
-+++ getfem++-5.1+dfsg1/configure.ac
-@@ -971,43 +971,6 @@ fi
+--- getfem-5.2.orig/configure.ac
++++ getfem-5.2/configure.ac
+@@ -1045,43 +1045,6 @@ fi
  AM_CONDITIONAL(BUILDPYTHON, test x$usepython = xYES)
  AM_CONDITIONAL(BUILDPYTHONPAR, test x$ac_python_mpi4py = xYES)
  
@@ -116,7 +98,7 @@ Index: getfem++-5.1+dfsg1/configure.ac
  
  dnl -----------------------------------------------
  dnl Outputs
-@@ -1047,8 +1010,6 @@ interface/src/matlab/Makefile
+@@ -1122,8 +1085,6 @@ interface/src/matlab/Makefile
  interface/src/matlab/private/Makefile                                   \
  interface/src/python/Makefile                                           \
  interface/src/python/setup.py                                           \

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