[pyfai] branch master updated (4082d2d -> 1c774fd)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Tue Aug 29 12:33:51 UTC 2017
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch master
in repository pyfai.
from 4082d2d unactivate the test except for python2 for now
new 9abe3ee update the copyright for 0.14.0
new 7ca8c28 New upstream version 0.14.0+dfsg
new fd9ae0c Merge tag 'upstream/0.14.0+dfsg'
new ed118b0 check the pgp signature via uscan
new 1548dbc * use cme fix dpkg
new 9660c64 update the changelog for 0.14.0
new e29e49f debian/rules simplified the sphinx call
new 73d8b82 fix the FTBFS with sphinx
new 8e51568 build the man page via build_man
new 065fcb1 try to solve the build_man issue
new b77a31e wrap_and_sort + cme fix dpkg
new beac864 write a rule in order to build the manpages
new ef85908 wrong build_man target
new 030a7d7 Added numexpr as Build-Depends and update the Changelog
new 97f6e41 Add 0004-unactivated-a-bunch-of-failling-tests.patch
new d39285e run test with xvfb
new 914acb4 set the proxy in order to avoid network connection when building
new 38df54d manpages are build somewhere else now
new 1c774fd not yet released
The 19 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
MANIFEST.in | 5 +-
PKG-INFO | 42 +-
README.rst | 37 +-
bootstrap.py | 186 +-
copyright | 83 +-
debian/changelog | 23 +
debian/compat | 2 +-
debian/control | 105 +-
debian/copyright | 124 +-
.../0002-remove-useless-logic-in-conf.py.patch | 30 +
...03-remove-a-wrong-PYTHONPATH-modification.patch | 22 +
debian/patches/0003-use-the-system-mathjax.patch | 4 +-
...004-unactivated-a-bunch-of-failling-tests.patch | 72 +
debian/patches/series | 3 +
debian/rules | 14 +-
debian/upstream/signing-key.asc | 171 +
debian/watch | 1 +
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doc/build/_sources/operations/macosx.txt | 93 -
doc/build/_sources/operations/windows.txt | 201 -
doc/build/_sources/project.txt | 287 -
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doc/build/man/check_calib.html | 162 -
doc/build/man/detector2nexus.html | 237 -
doc/build/man/diff_map.html | 323 -
doc/build/man/diff_tomo.html | 272 -
doc/build/man/pyFAI-average.html | 236 -
doc/build/man/pyFAI-calib.html | 537 -
doc/build/man/pyFAI-drawmask.html | 181 -
doc/build/man/pyFAI-integrate.html | 217 -
doc/build/man/pyFAI-recalib.html | 231 -
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doc/source/calibration.rst | 5 +
doc/source/changelog.rst | 21 +-
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pyFAI/ext/histogram.pyx => doc/source/conf_rtd.py | 40 +-
doc/source/coverage.rst | 78 +-
doc/source/design/ai.rst | 46 +-
doc/source/detector.rst | 2 +
doc/source/geometry.rst | 3 +
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pyFAI/{ext/histogram.pyx => app/mx_calibrate.py} | 52 +-
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pyFAI/azimuthalIntegrator.py | 908 +-
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pyFAI/ext/bilinear.pxi | 162 +-
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pyFAI/ext/fastcrc.c | 368 +-
pyFAI/ext/fastcrc.pyx | 10 +-
pyFAI/ext/histogram.c | 12151 ++++---
pyFAI/ext/{histogram.c => histogram_nomp.c} | 14587 +++++----
pyFAI/ext/histogram_nomp.pxi | 36 +-
pyFAI/ext/histogram_nomp.pyx | 1 +
pyFAI/ext/{histogram.c => histogram_omp.c} | 13983 +++++---
pyFAI/ext/histogram_omp.pxi | 36 +-
pyFAI/ext/histogram_omp.pyx | 1 +
pyFAI/ext/{bilinear.c => inpainting.c} | 18907 ++++++-----
pyFAI/ext/inpainting.pyx | 226 +
pyFAI/{gui/__init__.py => ext/isnan.pxd} | 15 +-
pyFAI/ext/marchingsquares.c | 2 +-
pyFAI/ext/marchingsquares.pyx | 6 +-
pyFAI/ext/morphology.c | 348 +-
pyFAI/ext/morphology.pyx | 22 +-
pyFAI/ext/preproc.c | 15164 +++++++--
pyFAI/ext/preproc.pyx | 472 +-
pyFAI/ext/reconstruct.c | 350 +-
pyFAI/ext/reconstruct.pyx | 2 +-
pyFAI/ext/{fastcrc.c => regrid_common.c} | 4065 ++-
pyFAI/ext/regrid_common.pxi | 10 +-
pyFAI/ext/relabel.c | 360 +-
pyFAI/ext/relabel.pyx | 48 +-
pyFAI/ext/setup.py | 108 +
pyFAI/ext/sparse_common.pxi | 3 +-
pyFAI/ext/sparse_utils.c | 17620 +++++++---
pyFAI/ext/{sparse_common.pxi => sparse_utils.pxd} | 29 +-
pyFAI/ext/sparse_utils.pyx | 174 +-
pyFAI/ext/splitBBox.c | 14563 ++++++---
pyFAI/ext/splitBBox.pyx | 87 +-
pyFAI/ext/splitBBoxCSR.c | 22322 ++++++++-----
pyFAI/ext/splitBBoxCSR.pyx | 133 +-
pyFAI/ext/splitBBoxLUT.c | 23303 +++++++------
pyFAI/ext/splitBBoxLUT.pyx | 195 +-
pyFAI/ext/splitPixel.c | 14165 +++++---
pyFAI/ext/splitPixel.pyx | 70 +-
pyFAI/ext/splitPixelFull.c | 63 +-
pyFAI/ext/splitPixelFull.pyx | 82 +-
pyFAI/ext/splitPixelFullCSR.c | 18134 ++++++----
pyFAI/ext/splitPixelFullCSR.pyx | 113 +-
pyFAI/ext/splitPixelFullLUT.c | 3976 ++-
pyFAI/ext/splitPixelFullLUT.pyx | 101 +-
pyFAI/ext/splitPixelFullLUT_double.c | 14212 +++++---
pyFAI/ext/splitPixelFullLUT_double.pyx | 55 +-
pyFAI/ext/src/cpuid.c | 33 -
pyFAI/ext/src/crc32.c | 3 +-
pyFAI/{gui/__init__.py => ext/src/isnan.h} | 28 +-
pyFAI/ext/watershed.c | 24216 ++++++++------
pyFAI/ext/watershed.pyx | 37 +-
pyFAI/geometry.py | 373 +-
pyFAI/geometryRefinement.py | 251 +-
pyFAI/goniometer.py | 565 +
pyFAI/grid.py | 30 +-
.../AbstractCalibrationTask.py} | 58 +-
pyFAI/gui/calibration/CalibrantSelector.py | 91 +
pyFAI/gui/calibration/CalibrationWindow.py | 80 +
pyFAI/gui/calibration/DetectorSelector.py | 92 +
pyFAI/gui/calibration/ExperimentTask.py | 251 +
pyFAI/gui/calibration/FileEdit.py | 121 +
pyFAI/gui/calibration/GeometryTask.py | 515 +
pyFAI/gui/calibration/IntegrationTask.py | 410 +
pyFAI/gui/calibration/MaskTask.py | 193 +
pyFAI/gui/calibration/PeakPickingTask.py | 904 +
pyFAI/gui/calibration/QuantityEdit.py | 128 +
pyFAI/gui/calibration/RingCalibration.py | 263 +
pyFAI/gui/calibration/RingExtractor.py | 228 +
pyFAI/gui/calibration/UnitSelector.py | 114 +
pyFAI/gui/{ => calibration}/__init__.py | 6 +-
.../model/AbstractModel.py} | 38 +-
.../model/CalibrantModel.py} | 26 +-
pyFAI/gui/calibration/model/CalibrationModel.py | 70 +
.../model/ConstraintModel.py} | 42 +-
.../model/DataModel.py} | 26 +-
.../model/DataModelAdaptor.py} | 56 +-
.../model/DetectorModel.py} | 26 +-
.../calibration/model/ExperimentSettingsModel.py | 120 +
.../calibration/model/GeometryConstraintsModel.py | 91 +
pyFAI/gui/calibration/model/GeometryModel.py | 103 +
.../model/IntegrationSettingsModel.py} | 28 +-
.../model/PeakModel.py} | 69 +-
.../model/PeakSelectionModel.py} | 62 +-
.../model/WavelengthToEnergyAdaptor.py} | 31 +-
pyFAI/gui/{ => calibration/model}/__init__.py | 6 +-
pyFAI/gui/{__init__.py => calibration/setup.py} | 23 +-
pyFAI/gui/calibration/utils.py | 131 +
pyFAI/gui/calibration/validators.py | 106 +
pyFAI/gui/icons.py | 120 +
pyFAI/gui/jupyter.py | 174 +
pyFAI/gui/{__init__.py => setup.py} | 23 +-
pyFAI/gui/utils.py | 36 +-
pyFAI/integrate_widget.py | 9 +-
pyFAI/io.py | 239 +-
pyFAI/massif.py | 38 +-
pyFAI/multi_geometry.py | 41 +-
pyFAI/ocl_azim_csr.py | 419 -
pyFAI/ocl_azim_lut.py | 395 -
pyFAI/ocl_sort.py | 349 -
pyFAI/{ => opencl}/OCLFullSplit.py | 52 +-
pyFAI/opencl/__init__.py | 50 +
pyFAI/opencl/azim_csr.py | 406 +
pyFAI/{ocl_azim.py => opencl/azim_hist.py} | 38 +-
pyFAI/opencl/azim_lut.py | 381 +
pyFAI/{opencl.py => opencl/common.py} | 172 +-
pyFAI/{ => opencl}/ocl_azim_csr_dis.py | 58 +-
pyFAI/{ => opencl}/ocl_hist_pixelsplit.py | 41 +-
pyFAI/opencl/preproc.py | 505 +
pyFAI/opencl/processing.py | 283 +
pyFAI/{ext/sparse_common.pxi => opencl/setup.py} | 35 +-
pyFAI/opencl/sort.py | 498 +
pyFAI/{ext/crc32.pxd => opencl/test/__init__.py} | 22 +-
pyFAI/opencl/test/test_addition.py | 135 +
pyFAI/opencl/utils.py | 101 +
pyFAI/peak_picker.py | 159 +-
pyFAI/preproc.py | 209 +
pyFAI/resources/calibration/LaB6.D | 1350 +
pyFAI/resources/gui/calibration-experiment.ui | 353 +
pyFAI/resources/gui/calibration-geometry.ui | 161 +
pyFAI/resources/gui/calibration-main.ui | 80 +
pyFAI/resources/gui/calibration-mask.ui | 75 +
pyFAI/resources/gui/calibration-peakpicking.ui | 324 +
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pyFAI/resources/gui/icons/variable-fixed.svg | 80 +
pyFAI/resources/openCL/addition.cl | 36 +
pyFAI/resources/openCL/for_eclipse.h | 2 +-
pyFAI/resources/openCL/kahan.cl | 36 +
pyFAI/resources/openCL/memset.cl | 67 +
pyFAI/resources/openCL/ocl_azim_CSR.cl | 250 +-
pyFAI/resources/openCL/ocl_azim_LUT.cl | 31 +-
pyFAI/resources/openCL/ocl_azim_kernel2d_2.cl | 31 +-
pyFAI/resources/openCL/ocl_azim_kernel_2.cl | 25 +-
pyFAI/resources/openCL/ocl_bispev.cl | 31 +-
pyFAI/resources/openCL/ocl_hist_pixelsplit.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit2.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit3.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit_test.cl | 25 +-
pyFAI/resources/openCL/preprocess.cl | 556 +-
pyFAI/resources/openCL/reduction_test.cl | 28 +-
pyFAI/resources/openCL/reduction_test4.cl | 25 +-
pyFAI/resources/openCL/separate.cl | 240 +-
pyFAI/resources/openCL/sigma_clip.cl | 513 +
pyFAI/{gui/__init__.py => resources/setup.py} | 22 +-
pyFAI/{gui/__init__.py => setup.py} | 34 +-
pyFAI/test/test_all.py | 8 +-
pyFAI/test/test_average.py | 13 +-
pyFAI/test/test_azimuthal_integrator.py | 94 +-
pyFAI/test/test_bayes.py | 6 +-
pyFAI/test/test_bilinear.py | 8 +-
pyFAI/test/test_bispev.py | 5 +-
pyFAI/test/test_blob_detection.py | 9 +-
pyFAI/test/test_bug_regression.py | 11 +-
pyFAI/test/test_calibrant.py | 92 +-
pyFAI/test/test_convolution.py | 9 +-
pyFAI/test/test_csr.py | 58 +-
pyFAI/test/test_detector.py | 48 +-
pyFAI/test/test_dummy.py | 5 +-
pyFAI/test/test_export.py | 8 +-
pyFAI/test/test_flat.py | 40 +-
pyFAI/test/test_geometry.py | 63 +-
pyFAI/test/test_geometry_refinement.py | 790 +-
pyFAI/test/test_goniometer.py | 131 +
pyFAI/test/test_histogram.py | 13 +-
pyFAI/test/test_integrate.py | 83 +-
pyFAI/test/test_integrate_app.py | 175 +
pyFAI/test/test_integrate_widget.py | 36 +-
pyFAI/test/test_io.py | 18 +-
pyFAI/test/test_marchingsquares.py | 5 +-
pyFAI/test/test_mask.py | 19 +-
pyFAI/test/test_multi_geometry.py | 7 +-
pyFAI/test/test_ocl_sort.py | 146 +-
pyFAI/test/test_openCL.py | 24 +-
pyFAI/test/test_peak_picking.py | 8 +-
pyFAI/test/test_polarization.py | 27 +-
pyFAI/test/test_preproc.py | 95 +-
pyFAI/test/test_saxs.py | 24 +-
pyFAI/test/test_scripts.py | 69 +-
pyFAI/test/test_sparse.py | 45 +-
pyFAI/test/test_split_pixel.py | 9 +-
pyFAI/test/test_utils.py | 10 +-
pyFAI/test/test_utils_shell.py | 8 +-
pyFAI/test/test_utils_stringutil.py | 7 +-
pyFAI/test/test_watershed.py | 5 +-
pyFAI/test/test_worker.py | 7 +-
pyFAI/test/utilstest.py | 178 +-
pyFAI/units.py | 17 +-
pyFAI/utils/__init__.py | 72 +-
pyFAI/utils/bayes.py | 53 +-
pyFAI/utils/ellipse.py | 86 +
pyFAI/{gui/__init__.py => utils/setup.py} | 22 +-
pyFAI/utils/shell.py | 6 +-
pyFAI/utils/stringutil.py | 4 +-
pyFAI/worker.py | 32 +-
run_tests.py | 3 +-
scripts/MX-calibrate | 67 -
scripts/check_calib | 69 -
scripts/diff_map | 63 -
scripts/pyFAI-calib | 66 -
scripts/pyFAI-integrate | 208 -
scripts/pyFAI-recalib | 66 -
setup.cfg | 4 +-
setup.py | 1202 +-
version.py | 47 +-
604 files changed, 291929 insertions(+), 211660 deletions(-)
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copy pyFAI/{ext => app}/__init__.py (100%)
rename scripts/pyFAI-average => pyFAI/app/average.py (78%)
rename scripts/pyFAI-benchmark => pyFAI/app/benchmark.py (75%)
copy pyFAI/{ext/histogram.pyx => app/calib.py} (57%)
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copy pyFAI/{ext/histogram.pyx => app/check_calib.py} (57%)
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rename scripts/detector2nexus => pyFAI/app/detector2nexus.py (81%)
copy pyFAI/{ext/histogram.pyx => app/diff_map.py} (52%)
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rename scripts/diff_tomo => pyFAI/app/diff_tomo.py (85%)
rename scripts/pyFAI-drawmask => pyFAI/app/drawmask.py (81%)
rename scripts/eiger-mask => pyFAI/app/eiger_mask.py (50%)
create mode 100755 pyFAI/app/integrate.py
copy pyFAI/{ext/histogram.pyx => app/mx_calibrate.py} (55%)
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copy pyFAI/{ext/histogram.pyx => app/recalib.py} (56%)
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rename scripts/pyFAI-saxs => pyFAI/app/saxs.py (60%)
copy pyFAI/{gui/__init__.py => app/setup.py} (74%)
rename scripts/pyFAI-waxs => pyFAI/app/waxs.py (69%)
copy pyFAI/{gui/__init__.py => benchmark/setup.py} (74%)
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copy pyFAI/ext/{histogram.c => histogram_omp.c} (63%)
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copy pyFAI/ext/{bilinear.c => inpainting.c} (71%)
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copy pyFAI/{gui/__init__.py => ext/isnan.pxd} (75%)
copy pyFAI/ext/{fastcrc.c => regrid_common.c} (56%)
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copy pyFAI/gui/{__init__.py => calibration/model/AbstractModel.py} (61%)
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copy pyFAI/gui/{__init__.py => calibration/model/ConstraintModel.py} (58%)
copy pyFAI/gui/{__init__.py => calibration/model/DataModel.py} (73%)
copy pyFAI/gui/{matplotlib.py => calibration/model/DataModelAdaptor.py} (55%)
copy pyFAI/gui/{__init__.py => calibration/model/DetectorModel.py} (71%)
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copy pyFAI/gui/{__init__.py => calibration/model/IntegrationSettingsModel.py} (66%)
copy pyFAI/gui/{matplotlib.py => calibration/model/PeakModel.py} (52%)
copy pyFAI/gui/{matplotlib.py => calibration/model/PeakSelectionModel.py} (55%)
copy pyFAI/gui/{__init__.py => calibration/model/WavelengthToEnergyAdaptor.py} (61%)
copy pyFAI/gui/{ => calibration/model}/__init__.py (93%)
copy pyFAI/gui/{__init__.py => calibration/setup.py} (72%)
create mode 100644 pyFAI/gui/calibration/utils.py
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rename pyFAI/{ => opencl}/ocl_hist_pixelsplit.py (93%)
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copy pyFAI/{ext/sparse_common.pxi => opencl/setup.py} (64%)
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copy pyFAI/{ext/crc32.pxd => opencl/test/__init__.py} (73%)
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copy pyFAI/{gui/__init__.py => resources/setup.py} (74%)
copy pyFAI/{gui/__init__.py => setup.py} (57%)
create mode 100644 pyFAI/test/test_goniometer.py
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copy pyFAI/{gui/__init__.py => utils/setup.py} (74%)
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