[pyfai] 03/19: Merge tag 'upstream/0.14.0+dfsg'
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Tue Aug 29 12:34:06 UTC 2017
This is an automated email from the git hooks/post-receive script.
picca pushed a commit to branch master
in repository pyfai.
commit fd9ae0c47cf72bb4dcea85389036308b7a24f873
Merge: 9abe3ee 7ca8c28
Author: Picca Frédéric-Emmanuel <picca at synchrotron-soleil.fr>
Date: Mon Jul 31 11:50:07 2017 +0200
Merge tag 'upstream/0.14.0+dfsg'
Upstream version 0.14.0+dfsg
MANIFEST.in | 5 +-
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README.rst | 37 +-
bootstrap.py | 186 +-
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pyFAI.egg-info/top_level.txt | 1 -
pyFAI/__init__.py | 33 +-
pyFAI/app/__init__.py | 0
scripts/pyFAI-average => pyFAI/app/average.py | 113 +-
scripts/pyFAI-benchmark => pyFAI/app/benchmark.py | 46 +-
pyFAI/app/calib.py | 71 +
pyFAI/app/calib2.py | 414 +
pyFAI/app/check_calib.py | 75 +
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pyFAI/app/diff_map.py | 72 +
scripts/diff_tomo => pyFAI/app/diff_tomo.py | 50 +-
scripts/pyFAI-drawmask => pyFAI/app/drawmask.py | 52 +-
scripts/eiger-mask => pyFAI/app/eiger_mask.py | 69 +-
pyFAI/app/integrate.py | 260 +
pyFAI/app/mx_calibrate.py | 72 +
pyFAI/app/recalib.py | 72 +
scripts/pyFAI-saxs => pyFAI/app/saxs.py | 112 +-
pyFAI/{ext/sparse_common.pxi => app/setup.py} | 33 +-
scripts/pyFAI-waxs => pyFAI/app/waxs.py | 99 +-
pyFAI/average.py | 6 +-
pyFAI/azimuthalIntegrator.py | 908 +-
pyFAI/benchmark/__init__.py | 19 +-
.../{ext/sparse_common.pxi => benchmark/setup.py} | 33 +-
pyFAI/blob_detection.py | 39 +-
pyFAI/calibrant.py | 99 +-
pyFAI/calibration.py | 69 +-
pyFAI/containers.py | 112 +-
pyFAI/control_points.py | 542 +
pyFAI/detectors.py | 381 +-
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pyFAI/ext/_bispev.c | 688 +-
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pyFAI/ext/_blob.c | 1297 +-
pyFAI/ext/_blob.pyx | 142 +-
pyFAI/ext/_distortion.c | 30846 ++++++++++-------
pyFAI/ext/_distortion.pyx | 70 +-
pyFAI/ext/_distortionCSR.c | 32743 -------------------
pyFAI/ext/_geometry.c | 31127 ++++++++++--------
pyFAI/ext/_geometry.pyx | 66 +-
pyFAI/ext/_tree.c | 2 +-
pyFAI/ext/_tree.pyx | 6 +-
pyFAI/ext/bilinear.c | 2132 +-
pyFAI/ext/bilinear.pxi | 162 +-
pyFAI/ext/bilinear.pyx | 8 +-
pyFAI/ext/container.pyx | 143 +
pyFAI/ext/fastcrc.c | 368 +-
pyFAI/ext/fastcrc.pyx | 10 +-
pyFAI/ext/histogram.c | 12151 ++++---
pyFAI/ext/{histogram.c => histogram_nomp.c} | 14587 +++++----
pyFAI/ext/histogram_nomp.pxi | 36 +-
pyFAI/ext/histogram_nomp.pyx | 1 +
pyFAI/ext/{histogram.c => histogram_omp.c} | 13983 +++++---
pyFAI/ext/histogram_omp.pxi | 36 +-
pyFAI/ext/histogram_omp.pyx | 1 +
pyFAI/ext/{bilinear.c => inpainting.c} | 18907 ++++++-----
pyFAI/ext/inpainting.pyx | 226 +
pyFAI/ext/{sparse_common.pxi => isnan.pxd} | 30 +-
pyFAI/ext/marchingsquares.c | 2 +-
pyFAI/ext/marchingsquares.pyx | 6 +-
pyFAI/ext/morphology.c | 348 +-
pyFAI/ext/morphology.pyx | 22 +-
pyFAI/ext/preproc.c | 15164 +++++++--
pyFAI/ext/preproc.pyx | 472 +-
pyFAI/ext/reconstruct.c | 350 +-
pyFAI/ext/reconstruct.pyx | 2 +-
pyFAI/ext/{fastcrc.c => regrid_common.c} | 4065 ++-
pyFAI/ext/regrid_common.pxi | 10 +-
pyFAI/ext/relabel.c | 360 +-
pyFAI/ext/relabel.pyx | 48 +-
pyFAI/ext/setup.py | 108 +
pyFAI/ext/sparse_common.pxi | 3 +-
pyFAI/ext/sparse_utils.c | 17620 +++++++---
pyFAI/ext/{sparse_common.pxi => sparse_utils.pxd} | 29 +-
pyFAI/ext/sparse_utils.pyx | 174 +-
pyFAI/ext/splitBBox.c | 14563 ++++++---
pyFAI/ext/splitBBox.pyx | 87 +-
pyFAI/ext/splitBBoxCSR.c | 22322 ++++++++-----
pyFAI/ext/splitBBoxCSR.pyx | 133 +-
pyFAI/ext/splitBBoxLUT.c | 23303 +++++++------
pyFAI/ext/splitBBoxLUT.pyx | 195 +-
pyFAI/ext/splitPixel.c | 14165 +++++---
pyFAI/ext/splitPixel.pyx | 70 +-
pyFAI/ext/splitPixelFull.c | 63 +-
pyFAI/ext/splitPixelFull.pyx | 82 +-
pyFAI/ext/splitPixelFullCSR.c | 18134 ++++++----
pyFAI/ext/splitPixelFullCSR.pyx | 113 +-
pyFAI/ext/splitPixelFullLUT.c | 3976 ++-
pyFAI/ext/splitPixelFullLUT.pyx | 101 +-
pyFAI/ext/splitPixelFullLUT_double.c | 14212 +++++---
pyFAI/ext/splitPixelFullLUT_double.pyx | 55 +-
pyFAI/ext/src/cpuid.c | 33 -
pyFAI/ext/src/crc32.c | 3 +-
pyFAI/ext/{sparse_common.pxi => src/isnan.h} | 41 +-
pyFAI/ext/watershed.c | 24216 ++++++++------
pyFAI/ext/watershed.pyx | 37 +-
pyFAI/geometry.py | 373 +-
pyFAI/geometryRefinement.py | 251 +-
pyFAI/goniometer.py | 565 +
pyFAI/grid.py | 30 +-
pyFAI/gui/calibration/AbstractCalibrationTask.py | 66 +
pyFAI/gui/calibration/CalibrantSelector.py | 91 +
pyFAI/gui/calibration/CalibrationWindow.py | 80 +
pyFAI/gui/calibration/DetectorSelector.py | 92 +
pyFAI/gui/calibration/ExperimentTask.py | 251 +
pyFAI/gui/calibration/FileEdit.py | 121 +
pyFAI/gui/calibration/GeometryTask.py | 515 +
pyFAI/gui/calibration/IntegrationTask.py | 410 +
pyFAI/gui/calibration/MaskTask.py | 193 +
pyFAI/gui/calibration/PeakPickingTask.py | 904 +
pyFAI/gui/calibration/QuantityEdit.py | 128 +
pyFAI/gui/calibration/RingCalibration.py | 263 +
pyFAI/gui/calibration/RingExtractor.py | 228 +
pyFAI/gui/calibration/UnitSelector.py | 114 +
.../calibration/__init__.py} | 27 +-
.../calibration/model/AbstractModel.py} | 60 +-
.../calibration/model/CalibrantModel.py} | 41 +-
pyFAI/gui/calibration/model/CalibrationModel.py | 70 +
pyFAI/gui/calibration/model/ConstraintModel.py | 65 +
.../calibration/model/DataModel.py} | 41 +-
pyFAI/gui/calibration/model/DataModelAdaptor.py | 64 +
.../calibration/model/DetectorModel.py} | 41 +-
.../calibration/model/ExperimentSettingsModel.py | 120 +
.../calibration/model/GeometryConstraintsModel.py | 91 +
pyFAI/gui/calibration/model/GeometryModel.py | 103 +
.../calibration/model/IntegrationSettingsModel.py} | 43 +-
pyFAI/gui/calibration/model/PeakModel.py | 81 +
pyFAI/gui/calibration/model/PeakSelectionModel.py | 74 +
.../model/WavelengthToEnergyAdaptor.py} | 55 +-
.../calibration/model/__init__.py} | 27 +-
.../sparse_common.pxi => gui/calibration/setup.py} | 34 +-
pyFAI/gui/calibration/utils.py | 131 +
pyFAI/gui/calibration/validators.py | 106 +
pyFAI/gui/icons.py | 120 +
pyFAI/gui/jupyter.py | 174 +
pyFAI/{ext/sparse_common.pxi => gui/setup.py} | 34 +-
pyFAI/gui/utils.py | 36 +-
pyFAI/integrate_widget.py | 9 +-
pyFAI/io.py | 239 +-
pyFAI/massif.py | 38 +-
pyFAI/multi_geometry.py | 41 +-
pyFAI/ocl_azim_csr.py | 419 -
pyFAI/ocl_azim_lut.py | 395 -
pyFAI/ocl_sort.py | 349 -
pyFAI/{ => opencl}/OCLFullSplit.py | 52 +-
pyFAI/opencl/__init__.py | 50 +
pyFAI/opencl/azim_csr.py | 406 +
pyFAI/{ocl_azim.py => opencl/azim_hist.py} | 38 +-
pyFAI/opencl/azim_lut.py | 381 +
pyFAI/{opencl.py => opencl/common.py} | 172 +-
pyFAI/{ => opencl}/ocl_azim_csr_dis.py | 58 +-
pyFAI/{ => opencl}/ocl_hist_pixelsplit.py | 41 +-
pyFAI/opencl/preproc.py | 505 +
pyFAI/opencl/processing.py | 283 +
pyFAI/{ext/sparse_common.pxi => opencl/setup.py} | 35 +-
pyFAI/opencl/sort.py | 498 +
.../sparse_common.pxi => opencl/test/__init__.py} | 31 +-
pyFAI/opencl/test/test_addition.py | 135 +
pyFAI/opencl/utils.py | 101 +
pyFAI/peak_picker.py | 159 +-
pyFAI/preproc.py | 209 +
pyFAI/resources/calibration/LaB6.D | 1350 +
pyFAI/resources/gui/calibration-experiment.ui | 353 +
pyFAI/resources/gui/calibration-geometry.ui | 161 +
pyFAI/resources/gui/calibration-main.ui | 80 +
pyFAI/resources/gui/calibration-mask.ui | 75 +
pyFAI/resources/gui/calibration-peakpicking.ui | 324 +
pyFAI/resources/gui/calibration-result.ui | 225 +
pyFAI/resources/gui/icons/options.png | Bin 0 -> 1386 bytes
pyFAI/resources/gui/icons/options.svg | 91 +
pyFAI/resources/gui/icons/remove-peak.png | Bin 0 -> 534 bytes
pyFAI/resources/gui/icons/remove-peak.svg | 118 +
pyFAI/resources/gui/icons/search-peak.png | Bin 0 -> 537 bytes
pyFAI/resources/gui/icons/search-peak.svg | 65 +
pyFAI/resources/gui/icons/search-ring.png | Bin 0 -> 665 bytes
pyFAI/resources/gui/icons/search-ring.svg | 93 +
.../gui/icons/variable-constrained-out.png | Bin 0 -> 360 bytes
.../gui/icons/variable-constrained-out.svg | 55 +
pyFAI/resources/gui/icons/variable-constrained.png | Bin 0 -> 365 bytes
pyFAI/resources/gui/icons/variable-constrained.svg | 55 +
pyFAI/resources/gui/icons/variable-fixed.png | Bin 0 -> 344 bytes
pyFAI/resources/gui/icons/variable-fixed.svg | 80 +
pyFAI/resources/openCL/addition.cl | 36 +
pyFAI/resources/openCL/for_eclipse.h | 2 +-
pyFAI/resources/openCL/kahan.cl | 36 +
pyFAI/resources/openCL/memset.cl | 67 +
pyFAI/resources/openCL/ocl_azim_CSR.cl | 250 +-
pyFAI/resources/openCL/ocl_azim_LUT.cl | 31 +-
pyFAI/resources/openCL/ocl_azim_kernel2d_2.cl | 31 +-
pyFAI/resources/openCL/ocl_azim_kernel_2.cl | 25 +-
pyFAI/resources/openCL/ocl_bispev.cl | 31 +-
pyFAI/resources/openCL/ocl_hist_pixelsplit.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit2.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit3.cl | 31 +-
pyFAI/resources/openCL/ocl_lut_pixelsplit_test.cl | 25 +-
pyFAI/resources/openCL/preprocess.cl | 556 +-
pyFAI/resources/openCL/reduction_test.cl | 28 +-
pyFAI/resources/openCL/reduction_test4.cl | 25 +-
pyFAI/resources/openCL/separate.cl | 240 +-
pyFAI/resources/openCL/sigma_clip.cl | 513 +
.../{ext/sparse_common.pxi => resources/setup.py} | 33 +-
pyFAI/{test/test_dummy.py => setup.py} | 58 +-
pyFAI/test/test_all.py | 8 +-
pyFAI/test/test_average.py | 13 +-
pyFAI/test/test_azimuthal_integrator.py | 94 +-
pyFAI/test/test_bayes.py | 6 +-
pyFAI/test/test_bilinear.py | 8 +-
pyFAI/test/test_bispev.py | 5 +-
pyFAI/test/test_blob_detection.py | 9 +-
pyFAI/test/test_bug_regression.py | 11 +-
pyFAI/test/test_calibrant.py | 92 +-
pyFAI/test/test_convolution.py | 9 +-
pyFAI/test/test_csr.py | 58 +-
pyFAI/test/test_detector.py | 48 +-
pyFAI/test/test_dummy.py | 5 +-
pyFAI/test/test_export.py | 8 +-
pyFAI/test/test_flat.py | 40 +-
pyFAI/test/test_geometry.py | 63 +-
pyFAI/test/test_geometry_refinement.py | 790 +-
pyFAI/test/test_goniometer.py | 131 +
pyFAI/test/test_histogram.py | 13 +-
pyFAI/test/test_integrate.py | 83 +-
pyFAI/test/test_integrate_app.py | 175 +
pyFAI/test/test_integrate_widget.py | 36 +-
pyFAI/test/test_io.py | 18 +-
pyFAI/test/test_marchingsquares.py | 5 +-
pyFAI/test/test_mask.py | 19 +-
pyFAI/test/test_multi_geometry.py | 7 +-
pyFAI/test/test_ocl_sort.py | 146 +-
pyFAI/test/test_openCL.py | 24 +-
pyFAI/test/test_peak_picking.py | 8 +-
pyFAI/test/test_polarization.py | 27 +-
pyFAI/test/test_preproc.py | 95 +-
pyFAI/test/test_saxs.py | 24 +-
pyFAI/test/test_scripts.py | 69 +-
pyFAI/test/test_sparse.py | 45 +-
pyFAI/test/test_split_pixel.py | 9 +-
pyFAI/test/test_utils.py | 10 +-
pyFAI/test/test_utils_shell.py | 8 +-
pyFAI/test/test_utils_stringutil.py | 7 +-
pyFAI/test/test_watershed.py | 5 +-
pyFAI/test/test_worker.py | 7 +-
pyFAI/test/utilstest.py | 178 +-
pyFAI/units.py | 17 +-
pyFAI/utils/__init__.py | 72 +-
pyFAI/utils/bayes.py | 53 +-
pyFAI/utils/ellipse.py | 86 +
pyFAI/{ext/sparse_common.pxi => utils/setup.py} | 33 +-
pyFAI/utils/shell.py | 6 +-
pyFAI/utils/stringutil.py | 4 +-
pyFAI/worker.py | 32 +-
run_tests.py | 3 +-
scripts/MX-calibrate | 67 -
scripts/check_calib | 69 -
scripts/diff_map | 63 -
scripts/pyFAI-calib | 66 -
scripts/pyFAI-integrate | 208 -
scripts/pyFAI-recalib | 66 -
setup.cfg | 4 +-
setup.py | 1202 +-
version.py | 47 +-
592 files changed, 291877 insertions(+), 211583 deletions(-)
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