[hypre] branch master updated (702326b -> 8cfaa33)
Drew Parsons
dparsons at moszumanska.debian.org
Mon Dec 11 20:09:55 UTC 2017
This is an automated email from the git hooks/post-receive script.
dparsons pushed a change to branch master
in repository hypre.
from 702326b upload 2.11.2-2 to unstable
adds b0efb9c New upstream version 2.12.1
adds 5321750 Updated version 2.12.1 from 'upstream/2.12.1'
adds 1328791 update debian dir for new upstream version
adds 08c4e6c refresh debian/patches
adds aa98848 upload 2.12.1-1exp1 to experimental
adds 945b8b5 Refresh debian patch superlu_internal.patch
adds 1b376f7 New upstream version 2.13.0
adds a00b243 Update upstream source from tag 'upstream/2.13.0'
adds 67995e2 new upstream version
adds 32e4a0d now uses external SuperLU (remove debian superlu_internal.patch)
adds 007bcb4 refresh debian patches
adds e090f0a create debian patch pilut_blas_mangle.patch
adds 5439f37 add explicit Build-Depends for BLAS and SuperLU
adds bc1f8c1 refresh patches for superlu
adds e3d8219 link SUPERLU_LIBS in shlibs-interlink-sublibs.patch
adds 070c127 debian/rules: conditional assignment of dpkg-architecture variables
adds 20687b6 clear out unused debian patches
adds 29e73ce remove deprecated lintian overrides
adds 3ebed85 build against external superlu-dist
adds 7715962 update shlibs-interlink-sublibs.patch to link superlu-dist
adds 10c76dd Build against OpenBLAS or ATLAS to provide lapack, where available.
adds 4941989 revert build against optimised BLAS
adds 6729ac3 List OpenBLAS and ATLAS as alternative Build-Deps
adds 763bd19 upload 2.13.0-1exp1 to experimental
adds da845cc Standards-Version: 4.1.2
adds 8cfaa33 upload 2.13.0-2 to unstable
No new revisions were added by this update.
Summary of changes:
AUTOTEST/README.txt | 27 +-
AUTOTEST/autotest.sh | 283 -
AUTOTEST/{basictest.sh => basic.sh} | 3 +-
AUTOTEST/check-double.filters | 9 +-
AUTOTEST/check-int.filters | 8 +
AUTOTEST/check-mpi.filters | 11 +-
AUTOTEST/{cmaketest.sh => cmake.sh} | 2 +-
AUTOTEST/configure.sh | 5 +-
AUTOTEST/cronfile | 29 -
AUTOTEST/machine-mac.sh | 12 +-
AUTOTEST/{machine-rzmerl.sh => machine-rztopaz.sh} | 20 +-
AUTOTEST/{machine-rzzeus.sh => machine-syrah.sh} | 20 +-
.../{machine-vulcan.sh => machine-tux-exlibs.sh} | 38 +-
AUTOTEST/machine-tux.sh | 176 +-
AUTOTEST/machine-vulcan.sh | 12 +-
AUTOTEST/testdist.sh | 174 -
AUTOTEST/testsrc.sh | 89 -
CHANGELOG | 32 +
debian/changelog | 32 +
debian/control | 15 +-
debian/patches/cmake-install.patch | 32 -
debian/patches/cmake.patch | 45 -
debian/patches/complex.patch | 2 +-
debian/patches/config-for-petsc.patch | 15 -
debian/patches/config-update-dir.patch | 19 -
debian/patches/configure.patch | 4 +-
debian/patches/examples.patch | 257 -
debian/patches/fgmres-lib.patch | 183 -
debian/patches/flexgmres-to-parcsr_ls.patch | 42 -
debian/patches/install-libs.patch | 379 --
debian/patches/install.patch | 18 +-
debian/patches/lapack.patch | 2 +-
debian/patches/pilut_blas_mangle.patch | 12 +
debian/patches/series | 5 +-
debian/patches/shlibs-interlink-libHYPRE.so.patch | 9 +-
debian/patches/shlibs-interlink-sublibs.patch | 34 +-
debian/patches/superlu_internal.patch | 106 -
debian/patches/test.patch | 2 +-
debian/rules | 11 +-
debian/source/lintian-overrides | 8 -
docs/HYPRE_ref_manual.pdf | Bin 874193 -> 901034 bytes
docs/HYPRE_usr_manual.pdf | Bin 653348 -> 655892 bytes
src/CMakeLists.txt | 29 +-
src/FEI_mv/CMakeLists.txt | 38 +-
src/FEI_mv/DSuperLU/CBLAS/Cnames.h | 346 --
src/FEI_mv/DSuperLU/CBLAS/Makefile | 92 -
src/FEI_mv/DSuperLU/CBLAS/caxpy.c | 90 -
src/FEI_mv/DSuperLU/CBLAS/ccopy.c | 74 -
src/FEI_mv/DSuperLU/CBLAS/cdotc.c | 87 -
src/FEI_mv/DSuperLU/CBLAS/cgemv.c | 399 --
src/FEI_mv/DSuperLU/CBLAS/cgerc.c | 205 -
src/FEI_mv/DSuperLU/CBLAS/cgeru.c | 202 -
src/FEI_mv/DSuperLU/CBLAS/chemv.c | 421 --
src/FEI_mv/DSuperLU/CBLAS/cher2.c | 436 --
src/FEI_mv/DSuperLU/CBLAS/cscal.c | 70 -
src/FEI_mv/DSuperLU/CBLAS/ctrsv.c | 509 --
src/FEI_mv/DSuperLU/CBLAS/dasum.c | 88 -
src/FEI_mv/DSuperLU/CBLAS/daxpy.c | 94 -
src/FEI_mv/DSuperLU/CBLAS/dcabs1.c | 28 -
src/FEI_mv/DSuperLU/CBLAS/dcopy.c | 94 -
src/FEI_mv/DSuperLU/CBLAS/ddot.c | 97 -
src/FEI_mv/DSuperLU/CBLAS/dgemm.c | 395 --
src/FEI_mv/DSuperLU/CBLAS/dgemv.c | 299 -
src/FEI_mv/DSuperLU/CBLAS/dger.c | 182 -
src/FEI_mv/DSuperLU/CBLAS/dnrm2.c | 83 -
src/FEI_mv/DSuperLU/CBLAS/drot.c | 76 -
src/FEI_mv/DSuperLU/CBLAS/dscal.c | 83 -
src/FEI_mv/DSuperLU/CBLAS/dsymv.c | 300 -
src/FEI_mv/DSuperLU/CBLAS/dsyr2.c | 264 -
src/FEI_mv/DSuperLU/CBLAS/dtrsm.c | 485 --
src/FEI_mv/DSuperLU/CBLAS/dtrsv.c | 338 --
src/FEI_mv/DSuperLU/CBLAS/dzasum.c | 68 -
src/FEI_mv/DSuperLU/CBLAS/dznrm2.c | 96 -
src/FEI_mv/DSuperLU/CBLAS/f2c.h | 43 -
src/FEI_mv/DSuperLU/CBLAS/icamax.c | 72 -
src/FEI_mv/DSuperLU/CBLAS/idamax.c | 80 -
src/FEI_mv/DSuperLU/CBLAS/isamax.c | 80 -
src/FEI_mv/DSuperLU/CBLAS/izamax.c | 81 -
src/FEI_mv/DSuperLU/CBLAS/sasum.c | 89 -
src/FEI_mv/DSuperLU/CBLAS/saxpy.c | 94 -
src/FEI_mv/DSuperLU/CBLAS/scasum.c | 74 -
src/FEI_mv/DSuperLU/CBLAS/scnrm2.c | 96 -
src/FEI_mv/DSuperLU/CBLAS/scopy.c | 94 -
src/FEI_mv/DSuperLU/CBLAS/sdot.c | 96 -
src/FEI_mv/DSuperLU/CBLAS/sgemv.c | 299 -
src/FEI_mv/DSuperLU/CBLAS/sger.c | 181 -
src/FEI_mv/DSuperLU/CBLAS/snrm2.c | 83 -
src/FEI_mv/DSuperLU/CBLAS/srot.c | 76 -
src/FEI_mv/DSuperLU/CBLAS/sscal.c | 82 -
src/FEI_mv/DSuperLU/CBLAS/ssymv.c | 300 -
src/FEI_mv/DSuperLU/CBLAS/ssyr2.c | 263 -
src/FEI_mv/DSuperLU/CBLAS/strsv.c | 338 --
src/FEI_mv/DSuperLU/CBLAS/superlu_f2c.h | 43 -
src/FEI_mv/DSuperLU/CBLAS/zaxpy.c | 87 -
src/FEI_mv/DSuperLU/CBLAS/zcopy.c | 74 -
src/FEI_mv/DSuperLU/CBLAS/zdotc.c | 85 -
src/FEI_mv/DSuperLU/CBLAS/zgemm.c | 697 ---
src/FEI_mv/DSuperLU/CBLAS/zgemv.c | 400 --
src/FEI_mv/DSuperLU/CBLAS/zgerc.c | 206 -
src/FEI_mv/DSuperLU/CBLAS/zgeru.c | 203 -
src/FEI_mv/DSuperLU/CBLAS/zhemv.c | 421 --
src/FEI_mv/DSuperLU/CBLAS/zher2.c | 437 --
src/FEI_mv/DSuperLU/CBLAS/zscal.c | 70 -
src/FEI_mv/DSuperLU/CBLAS/ztrsm.c | 692 ---
src/FEI_mv/DSuperLU/CBLAS/ztrsv.c | 510 --
src/FEI_mv/DSuperLU/EXAMPLE/Makefile | 136 -
src/FEI_mv/DSuperLU/INSTALL/Makefile | 27 -
src/FEI_mv/DSuperLU/INSTALL/dlamch.c | 963 ----
src/FEI_mv/DSuperLU/INSTALL/dlamchtst.c | 34 -
src/FEI_mv/DSuperLU/INSTALL/install.csh | 14 -
src/FEI_mv/DSuperLU/INSTALL/lsame.c | 70 -
src/FEI_mv/DSuperLU/INSTALL/slamch.c | 982 ----
src/FEI_mv/DSuperLU/INSTALL/slamchtst.c | 34 -
src/FEI_mv/DSuperLU/INSTALL/superlu_timer.c | 54 -
src/FEI_mv/DSuperLU/INSTALL/testdlamch | Bin 14458 -> 0 bytes
src/FEI_mv/DSuperLU/INSTALL/testslamch | Bin 14102 -> 0 bytes
src/FEI_mv/DSuperLU/INSTALL/testtimer | Bin 333421 -> 0 bytes
src/FEI_mv/DSuperLU/INSTALL/timertst.c | 72 -
src/FEI_mv/DSuperLU/MAKE_INC/make.altix | 63 -
src/FEI_mv/DSuperLU/MAKE_INC/make.i386_linux | 64 -
src/FEI_mv/DSuperLU/MAKE_INC/make.opteron | 64 -
src/FEI_mv/DSuperLU/MAKE_INC/make.origin | 66 -
src/FEI_mv/DSuperLU/MAKE_INC/make.sp | 66 -
src/FEI_mv/DSuperLU/MAKE_INC/make.sp.64bit | 71 -
src/FEI_mv/DSuperLU/MAKE_INC/make.t3e | 68 -
src/FEI_mv/DSuperLU/MAKE_INC/make.xt4 | 62 -
src/FEI_mv/DSuperLU/Makefile | 61 -
src/FEI_mv/DSuperLU/Makefile.dsuperlu | 45 -
src/FEI_mv/DSuperLU/README | 175 -
src/FEI_mv/DSuperLU/SRC/Cnames.h | 348 --
src/FEI_mv/DSuperLU/SRC/Cnames.h.old | 285 -
src/FEI_mv/DSuperLU/SRC/GetDiagU.c | 101 -
src/FEI_mv/DSuperLU/SRC/Makefile | 191 -
src/FEI_mv/DSuperLU/SRC/Makefile.dsuperlu | 100 -
src/FEI_mv/DSuperLU/SRC/comm.c | 104 -
src/FEI_mv/DSuperLU/SRC/dcomplex.c | 105 -
src/FEI_mv/DSuperLU/SRC/dcomplex.h | 71 -
src/FEI_mv/DSuperLU/SRC/ddistribute.c | 725 ---
src/FEI_mv/DSuperLU/SRC/dgsequ.c | 178 -
src/FEI_mv/DSuperLU/SRC/dlamch.c | 964 ----
src/FEI_mv/DSuperLU/SRC/dlangs.c | 104 -
src/FEI_mv/DSuperLU/SRC/dlaqgs.c | 130 -
src/FEI_mv/DSuperLU/SRC/dldperm.c | 157 -
src/FEI_mv/DSuperLU/SRC/dmemory.c | 146 -
src/FEI_mv/DSuperLU/SRC/dmemory.c.orig | 146 -
src/FEI_mv/DSuperLU/SRC/dmemory.patch | 8 -
src/FEI_mv/DSuperLU/SRC/dmyblas2.c | 225 -
src/FEI_mv/DSuperLU/SRC/dreadhb.c | 371 --
src/FEI_mv/DSuperLU/SRC/dsp_blas2.c | 487 --
src/FEI_mv/DSuperLU/SRC/dsp_blas3.c | 118 -
src/FEI_mv/DSuperLU/SRC/dutil.c | 609 ---
src/FEI_mv/DSuperLU/SRC/etree.c | 419 --
src/FEI_mv/DSuperLU/SRC/get_perm_c.c | 474 --
src/FEI_mv/DSuperLU/SRC/get_perm_c_parmetis.c | 898 ---
src/FEI_mv/DSuperLU/SRC/hypre_interface.c | 6 -
src/FEI_mv/DSuperLU/SRC/lsame.c | 72 -
src/FEI_mv/DSuperLU/SRC/machines.h | 49 -
src/FEI_mv/DSuperLU/SRC/mc21.f | 143 -
src/FEI_mv/DSuperLU/SRC/mc64ad.f | 2002 -------
src/FEI_mv/DSuperLU/SRC/memory.c | 545 --
src/FEI_mv/DSuperLU/SRC/memory.c.orig | 546 --
src/FEI_mv/DSuperLU/SRC/memory.patch | 10 -
src/FEI_mv/DSuperLU/SRC/mmd.c | 1019 ----
src/FEI_mv/DSuperLU/SRC/old_colamd.c | 2583 ---------
src/FEI_mv/DSuperLU/SRC/old_colamd.h | 73 -
src/FEI_mv/DSuperLU/SRC/pddistribute.c | 1044 ----
src/FEI_mv/DSuperLU/SRC/pdgsequ.c | 231 -
src/FEI_mv/DSuperLU/SRC/pdgsmv.c | 370 --
src/FEI_mv/DSuperLU/SRC/pdgsmv_AXglobal.c | 301 --
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src/FEI_mv/DSuperLU/SRC/pdgsrfs_ABXglobal.c | 440 --
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src/FEI_mv/DSuperLU/SRC/pdgssvx.c | 1283 -----
src/FEI_mv/DSuperLU/SRC/pdgssvx.c.old | 1280 -----
src/FEI_mv/DSuperLU/SRC/pdgssvx_ABglobal.c | 1065 ----
src/FEI_mv/DSuperLU/SRC/pdgstrf_X1.c | 1324 -----
src/FEI_mv/DSuperLU/SRC/pdgstrf_irecv.c | 1343 -----
src/FEI_mv/DSuperLU/SRC/pdgstrs.c | 1200 ----
src/FEI_mv/DSuperLU/SRC/pdgstrs1.c | 819 ---
src/FEI_mv/DSuperLU/SRC/pdgstrs_Bglobal.c | 955 ----
src/FEI_mv/DSuperLU/SRC/pdgstrs_Bglobal_Bsend.c | 998 ----
src/FEI_mv/DSuperLU/SRC/pdgstrs_lsum.c | 363 --
src/FEI_mv/DSuperLU/SRC/pdlangs.c | 128 -
src/FEI_mv/DSuperLU/SRC/pdlaqgs.c | 136 -
src/FEI_mv/DSuperLU/SRC/pdsymbfact_distdata.c | 1943 -------
src/FEI_mv/DSuperLU/SRC/pdsymbfact_distdata.c.old | 1940 -------
src/FEI_mv/DSuperLU/SRC/pdutil.c | 529 --
src/FEI_mv/DSuperLU/SRC/psymbfact.c | 5174 ------------------
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src/FEI_mv/DSuperLU/SRC/psymbfact.h | 284 -
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src/FEI_mv/DSuperLU/SRC/pzgssvx_ABglobal.c | 1064 ----
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src/FEI_mv/DSuperLU/SRC/pzsymbfact_distdata.c.old | 1939 -------
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src/FEI_mv/DSuperLU/SRC/symbfact.c | 863 ---
src/FEI_mv/DSuperLU/SRC/util.c | 769 ---
src/FEI_mv/DSuperLU/SRC/util_dist.h | 150 -
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src/FEI_mv/DSuperLU/SRC/zdistribute.c | 724 ---
src/FEI_mv/DSuperLU/SRC/zdistribute_mark.c | 695 ---
src/FEI_mv/DSuperLU/SRC/zgsequ.c | 178 -
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src/FEI_mv/SuperLU/SRC/slacon.c | 228 -
src/FEI_mv/SuperLU/SRC/slamch.c | 984 ----
src/FEI_mv/SuperLU/SRC/slangs.c | 110 -
src/FEI_mv/SuperLU/SRC/slaqgs.c | 136 -
src/FEI_mv/SuperLU/SRC/slu_Cnames.h | 335 --
src/FEI_mv/SuperLU/SRC/slu_cdefs.h | 237 -
src/FEI_mv/SuperLU/SRC/slu_dcomplex.h | 72 -
src/FEI_mv/SuperLU/SRC/slu_ddefs.h | 240 -
src/FEI_mv/SuperLU/SRC/slu_scomplex.h | 72 -
src/FEI_mv/SuperLU/SRC/slu_sdefs.h | 234 -
src/FEI_mv/SuperLU/SRC/slu_util.c | 736 ---
src/FEI_mv/SuperLU/SRC/slu_util.h | 271 -
src/FEI_mv/SuperLU/SRC/slu_zdefs.h | 237 -
src/FEI_mv/SuperLU/SRC/smemory.c | 680 ---
src/FEI_mv/SuperLU/SRC/smyblas2.c | 224 -
src/FEI_mv/SuperLU/SRC/sp_coletree.c | 332 --
src/FEI_mv/SuperLU/SRC/sp_ienv.c | 63 -
src/FEI_mv/SuperLU/SRC/sp_preorder.c | 204 -
src/FEI_mv/SuperLU/SRC/spanel_bmod.c | 450 --
src/FEI_mv/SuperLU/SRC/spanel_dfs.c | 247 -
src/FEI_mv/SuperLU/SRC/spivotL.c | 173 -
src/FEI_mv/SuperLU/SRC/spivotgrowth.c | 107 -
src/FEI_mv/SuperLU/SRC/spruneL.c | 147 -
src/FEI_mv/SuperLU/SRC/sreadhb.c | 255 -
src/FEI_mv/SuperLU/SRC/ssnode_bmod.c | 116 -
src/FEI_mv/SuperLU/SRC/ssnode_dfs.c | 104 -
src/FEI_mv/SuperLU/SRC/ssp_blas2.c | 470 --
src/FEI_mv/SuperLU/SRC/ssp_blas3.c | 119 -
src/FEI_mv/SuperLU/SRC/superlu_timer.c | 56 -
src/FEI_mv/SuperLU/SRC/supermatrix.h | 140 -
src/FEI_mv/SuperLU/SRC/sutil.c | 481 --
src/FEI_mv/SuperLU/SRC/xerbla.c | 43 -
src/FEI_mv/SuperLU/SRC/zcolumn_bmod.c | 363 --
src/FEI_mv/SuperLU/SRC/zcolumn_dfs.c | 269 -
src/FEI_mv/SuperLU/SRC/zcopy_to_ucol.c | 103 -
src/FEI_mv/SuperLU/SRC/zgscon.c | 143 -
src/FEI_mv/SuperLU/SRC/zgsequ.c | 184 -
src/FEI_mv/SuperLU/SRC/zgsrfs.c | 447 --
src/FEI_mv/SuperLU/SRC/zgssv.c | 221 -
src/FEI_mv/SuperLU/SRC/zgssvx.c | 614 ---
src/FEI_mv/SuperLU/SRC/zgstrf.c | 433 --
src/FEI_mv/SuperLU/SRC/zgstrs.c | 345 --
src/FEI_mv/SuperLU/SRC/zlacon.c | 213 -
src/FEI_mv/SuperLU/SRC/zlangs.c | 110 -
src/FEI_mv/SuperLU/SRC/zlaqgs.c | 138 -
src/FEI_mv/SuperLU/SRC/zmemory.c | 680 ---
src/FEI_mv/SuperLU/SRC/zmyblas2.c | 182 -
src/FEI_mv/SuperLU/SRC/zpanel_bmod.c | 478 --
src/FEI_mv/SuperLU/SRC/zpanel_dfs.c | 247 -
src/FEI_mv/SuperLU/SRC/zpivotL.c | 174 -
src/FEI_mv/SuperLU/SRC/zpivotgrowth.c | 108 -
src/FEI_mv/SuperLU/SRC/zpruneL.c | 147 -
src/FEI_mv/SuperLU/SRC/zreadhb.c | 265 -
src/FEI_mv/SuperLU/SRC/zsnode_bmod.c | 118 -
src/FEI_mv/SuperLU/SRC/zsnode_dfs.c | 104 -
src/FEI_mv/SuperLU/SRC/zsp_blas2.c | 565 --
src/FEI_mv/SuperLU/SRC/zsp_blas3.c | 119 -
src/FEI_mv/SuperLU/SRC/zutil.c | 485 --
src/FEI_mv/SuperLU/make.inc | 46 -
src/FEI_mv/fei-hypre/FEI_HYPRE_Impl.cxx | 35 +-
src/FEI_mv/fei-hypre/HYPRE_LSC_aux.cxx | 18 +-
src/FEI_mv/fei-hypre/HYPRE_LSI_Dsuperlu.c | 9 +-
src/FEI_mv/fei-hypre/LLNL_FEI_Solver.cxx | 21 +-
src/FEI_mv/fei-hypre/Makefile | 11 +-
src/FEI_mv/femli/Makefile | 3 +-
src/FEI_mv/femli/mli_solver_seqsuperlu.cxx | 19 +-
src/FEI_mv/femli/mli_solver_superlu.cxx | 11 +-
src/FEI_mv/femli/mli_utils.c | 22 +-
src/IJ_mv/IJVector_parcsr.c | 5 +-
src/Makefile | 5 +-
src/blas/Makefile | 47 +-
src/blas/README | 29 +-
src/blas/_hypre_blas.h | 130 +
src/blas/blas_utils.c | 219 -
src/blas/dasum.c | 7 +-
src/blas/daxpy.c | 9 +-
src/blas/dcopy.c | 8 +-
src/blas/ddot.c | 6 +
src/blas/dgemm.c | 23 +-
src/blas/dgemv.c | 24 +-
src/blas/dger.c | 15 +-
src/blas/dnrm2.c | 11 +-
src/blas/drot.c | 9 +-
src/blas/dscal.c | 9 +-
src/blas/dswap.c | 10 +-
src/blas/dsymm.c | 26 +-
src/blas/dsymv.c | 19 +-
src/blas/dsyr2.c | 19 +-
src/blas/dsyr2k.c | 26 +-
src/blas/dsyrk.c | 28 +-
src/blas/dtrmm.c | 36 +-
src/blas/dtrmv.c | 32 +-
src/blas/dtrsm.c | 36 +-
src/blas/dtrsv.c | 31 +-
src/blas/f2c.c | 149 +
src/blas/f2c.h | 7 +
src/blas/hypre_blas.h | 153 +-
src/blas/idamax.c | 7 +-
src/blas/lsame.c | 125 +
src/blas/xerbla.c | 86 +
src/config/HYPRE_config.h.cmake.in | 6 +
src/config/HYPRE_config.h.in | 19 +
src/config/Makefile.config.in | 59 +-
src/config/config.guess | 20 +-
src/config/configure.in | 574 +-
src/configure | 942 +++-
src/distributed_ls/Euclid/Euclid_dh.c | 17 +-
src/distributed_ls/Euclid/ExternalRows_dh.c | 4 +-
src/distributed_ls/Euclid/Factor_dh.c | 10 +-
src/distributed_ls/Euclid/Mat_dh.c | 8 +-
src/distributed_ls/Euclid/Numbering_dh.c | 3 +-
src/distributed_ls/Euclid/TimeLog_dh.c | 4 +-
src/distributed_ls/Euclid/_hypre_Euclid.h | 12 +-
src/distributed_ls/Euclid/blas_dh.c | 4 +-
src/distributed_ls/Euclid/globalObjects.c | 3 +
src/distributed_ls/Euclid/macros_dh.h | 4 +
src/distributed_ls/Euclid/mat_dh_private.c | 8 +-
src/distributed_ls/ParaSails/ConjGrad.c | 13 +-
src/distributed_ls/ParaSails/DiagScale.c | 4 +-
src/distributed_ls/ParaSails/FGmres.c | 19 +-
src/distributed_ls/ParaSails/LoadBal.c | 8 +-
src/distributed_ls/ParaSails/Makefile | 2 +
src/distributed_ls/ParaSails/Matrix.c | 12 +-
src/distributed_ls/ParaSails/ParaSails.c | 44 +-
src/distributed_ls/ParaSails/driver.c | 12 +-
src/distributed_ls/ParaSails/lapdriver.c | 4 +-
src/distributed_ls/pilut/comm.c | 6 +-
src/distributed_ls/pilut/macros.h | 12 +-
src/distributed_ls/pilut/parilut.c | 4 +-
src/distributed_ls/pilut/trifactor.c | 8 +-
src/docs/usr_solvers.tex | 50 +-
src/examples/README_files/ex12f.f.html | 2 +-
src/examples/ex12f.f | 2 +-
src/krylov/HYPRE_lobpcg.c | 42 +-
src/krylov/Makefile | 2 +
src/krylov/bicgstab.c | 3 +-
src/krylov/gmres.c | 1 -
src/krylov/lobpcg.c | 6 +-
src/krylov/lobpcg.h | 10 +-
src/krylov/pcg.c | 4 +-
src/lapack/Makefile | 7 +-
src/lapack/README | 5 +
src/lapack/_hypre_lapack.h | 202 +
src/lapack/dbdsqr.c | 27 +-
src/lapack/dgebd2.c | 13 +-
src/lapack/dgebrd.c | 21 +-
src/lapack/dgelq2.c | 13 +-
src/lapack/dgelqf.c | 17 +-
src/lapack/dgels.c | 20 +-
src/lapack/dgeqr2.c | 13 +-
src/lapack/dgeqrf.c | 17 +-
src/lapack/dgesvd.c | 26 +-
src/lapack/dgetf2.c | 18 +-
src/lapack/dgetrf.c | 21 +-
src/lapack/dgetrs.c | 13 +-
src/lapack/dlabad.c | 12 +-
src/lapack/dlabrd.c | 15 +-
src/lapack/dlacpy.c | 11 +-
src/lapack/dlae2.c | 12 +-
src/lapack/dlaev2.c | 12 +-
src/lapack/dlamch.c | 43 +-
src/lapack/dlange.c | 13 +-
src/lapack/dlanst.c | 12 +-
src/lapack/dlansy.c | 14 +-
src/lapack/dlapy2.c | 11 +-
src/lapack/dlarf.c | 16 +-
src/lapack/dlarfb.c | 16 +-
src/lapack/dlarfg.c | 16 +-
src/lapack/dlarft.c | 14 +-
src/lapack/dlartg.c | 26 +-
src/lapack/dlas2.c | 12 +-
src/lapack/dlascl.c | 13 +-
src/lapack/dlaset.c | 11 +-
src/lapack/dlasq1.c | 25 +-
src/lapack/dlasq2.c | 21 +-
src/lapack/dlasq3.c | 14 +-
src/lapack/dlasq4.c | 15 +-
src/lapack/dlasq5.c | 10 +-
src/lapack/dlasq6.c | 12 +-
src/lapack/dlasr.c | 13 +-
src/lapack/dlasrt.c | 13 +-
src/lapack/dlassq.c | 10 +-
src/lapack/dlasv2.c | 12 +-
src/lapack/dlaswp.c | 11 +-
src/lapack/dlatrd.c | 17 +-
src/lapack/dorg2l.c | 17 +-
src/lapack/dorg2r.c | 15 +-
src/lapack/dorgbr.c | 15 +-
src/lapack/dorgl2.c | 15 +-
src/lapack/dorglq.c | 17 +-
src/lapack/dorgql.c | 17 +-
src/lapack/dorgqr.c | 17 +-
src/lapack/dorgtr.c | 15 +-
src/lapack/dorm2r.c | 15 +-
src/lapack/dormbr.c | 19 +-
src/lapack/dorml2.c | 15 +-
src/lapack/dormlq.c | 19 +-
src/lapack/dormqr.c | 19 +-
src/lapack/dpotf2.c | 21 +-
src/lapack/dpotrf.c | 21 +-
src/lapack/dpotrs.c | 16 +-
src/lapack/dsteqr.c | 31 +-
src/lapack/dsterf.c | 20 +-
src/lapack/dsyev.c | 25 +-
src/lapack/dsygs2.c | 23 +-
src/lapack/dsygst.c | 21 +-
src/lapack/dsygv.c | 22 +-
src/lapack/dsytd2.c | 19 +-
src/lapack/dsytrd.c | 17 +-
src/lapack/f2c.h | 7 +
src/lapack/hypre_lapack.h | 379 +-
src/lapack/ieeeck.c | 8 +-
src/lapack/ilaenv.c | 16 +-
src/lapack/lapack_utils.c | 123 -
src/lapack/lsame.c | 9 +-
src/lapack/xerbla.c | 13 +-
src/lib/Makefile | 8 +-
src/multivector/backup.c | 4 +-
src/multivector/csr_matmultivec.c | 2 +-
src/parcsr_block_mv/csr_block_matrix.c | 10 -
src/parcsr_ls/F90_HYPRE_parcsr_amg.c | 106 +-
src/parcsr_ls/HYPRE_parcsr_amg.c | 56 +-
src/parcsr_ls/HYPRE_parcsr_ls.h | 451 +-
src/parcsr_ls/HYPRE_parcsr_mgr.c | 249 +
src/parcsr_ls/Makefile | 9 +-
src/parcsr_ls/_hypre_parcsr_ls.h | 111 +-
src/parcsr_ls/ame.c | 13 +-
src/parcsr_ls/ame.h | 16 +-
src/parcsr_ls/amg_hybrid.c | 20 +-
src/parcsr_ls/ams.c | 42 +-
src/parcsr_ls/gen_redcs_mat.c | 14 +-
src/parcsr_ls/par_add_cycle.c | 226 +-
src/parcsr_ls/par_amg.c | 204 +-
src/parcsr_ls/par_amg.h | 27 +-
src/parcsr_ls/par_amg_setup.c | 317 +-
src/parcsr_ls/par_cheby.c | 338 ++
src/parcsr_ls/par_coarsen.c | 3 +-
src/parcsr_ls/par_cr.c | 18 +-
src/parcsr_ls/par_cycle.c | 34 +-
src/parcsr_ls/par_gsmg.c | 28 +-
src/parcsr_ls/par_jacobi_interp.c | 2 +-
src/parcsr_ls/par_mgr.c | 2680 +++++++++
src/parcsr_ls/par_mgr.h | 114 +
src/parcsr_ls/par_mgr_setup.c | 932 ++++
src/parcsr_ls/par_mgr_solve.c | 581 ++
src/parcsr_ls/par_relax.c | 82 +-
src/parcsr_ls/par_relax_more.c | 53 +-
src/parcsr_ls/par_stats.c | 84 +-
src/parcsr_ls/par_strength.c | 391 ++
src/parcsr_ls/par_sv_interp_lsfit.c | 52 +-
src/parcsr_ls/par_vardifconv.c | 9 +-
.../{par_vardifconv.c => par_vardifconv_rs.c} | 317 +-
src/parcsr_ls/schwarz.c | 5718 +++++++++-----------
src/parcsr_mv/_hypre_parcsr_mv.h | 6 +
src/parcsr_mv/par_csr_communication.c | 2 +-
src/parcsr_mv/par_csr_matrix.c | 8 +
src/parcsr_mv/par_csr_matvec.c | 47 +-
src/parcsr_mv/par_vector.c | 6 +
src/seq_mv/Makefile | 8 +-
.../dsuperlu_include.h => seq_mv/Makefile.empty} | 0
src/seq_mv/Makefile.nvcc | 4 +
src/seq_mv/csr_matrix.c | 45 +-
src/seq_mv/csr_matvec.c | 85 +-
src/seq_mv/gpukernels.cu | 243 +
src/seq_mv/gpukernels.h | 9 +
src/seq_mv/headers | 1 +
src/seq_mv/seq_mv.h | 42 +-
src/seq_mv/vector.c | 161 +-
src/sstruct_ls/HYPRE_sstruct_int.c | 8 +-
src/sstruct_ls/fac_amr_fcoarsen.c | 48 +-
src/sstruct_ls/fac_amr_rap.c | 7 +-
src/sstruct_ls/fac_cf_coarsen.c | 36 +-
src/sstruct_ls/fac_interp2.c | 37 +-
src/sstruct_ls/fac_restrict2.c | 25 +-
src/sstruct_ls/fac_setup2.c | 11 +-
src/sstruct_ls/fac_zero_stencilcoef.c | 20 +-
src/sstruct_ls/maxwell_PNedelec.c | 350 +-
src/sstruct_ls/maxwell_TV_setup.c | 9 +-
src/sstruct_ls/maxwell_grad.c | 30 +-
src/sstruct_ls/maxwell_physbdy.c | 12 +-
src/sstruct_ls/maxwell_semi_interp.c | 435 +-
src/sstruct_ls/node_relax.c | 36 +-
src/sstruct_ls/sstruct_sharedDOFComm.c | 14 +-
src/sstruct_mv/_hypre_sstruct_mv.h | 3 +
src/sstruct_mv/headers | 3 +
src/sstruct_mv/sstruct_matrix.c | 44 +-
src/sstruct_mv/sstruct_vector.c | 8 +-
src/struct_ls/HYPRE_struct_int.c | 9 +-
src/struct_ls/HYPRE_struct_pcg.c | 6 +-
src/struct_ls/_hypre_struct_ls.h | 2 -
src/struct_ls/cyclic_reduction.c | 65 +-
src/struct_ls/pfmg.c | 11 +-
src/struct_ls/pfmg2_setup_rap.c | 92 +-
src/struct_ls/pfmg3_setup_rap.c | 191 +-
src/struct_ls/pfmg_setup.c | 274 +-
src/struct_ls/pfmg_setup_interp.c | 70 +-
src/struct_ls/pfmg_setup_rap5.c | 15 +-
src/struct_ls/pfmg_setup_rap7.c | 10 +-
src/struct_ls/pfmg_solve.c | 2 +-
src/struct_ls/point_relax.c | 62 +-
src/struct_ls/red_black_constantcoef_gs.c | 229 +-
src/struct_ls/red_black_gs.c | 125 +-
src/struct_ls/red_black_gs.h | 223 +
src/struct_ls/semi_interp.c | 8 +-
src/struct_ls/semi_restrict.c | 6 +-
src/struct_ls/semi_setup_rap.c | 19 +-
src/struct_ls/smg.c | 7 +-
src/struct_ls/smg2_setup_rap.c | 72 +-
src/struct_ls/smg3_setup_rap.c | 108 +-
src/struct_ls/smg_axpy.c | 5 +-
src/struct_ls/smg_relax.c | 3 +-
src/struct_ls/smg_residual.c | 9 +-
src/struct_ls/smg_setup.c | 5 +-
src/struct_ls/smg_setup_interp.c | 4 +-
src/struct_ls/sparse_msg2_setup_rap.c | 45 +-
src/struct_ls/sparse_msg3_setup_rap.c | 61 +-
src/struct_ls/sparse_msg_filter.c | 49 +-
src/struct_ls/sparse_msg_interp.c | 10 +-
src/struct_ls/sparse_msg_restrict.c | 8 +-
src/struct_ls/sparse_msg_setup.c | 36 +-
src/struct_mv/_hypre_struct_mv.h | 2923 +++++++++-
src/struct_mv/assumed_part.c | 14 +-
src/struct_mv/box.h | 410 +-
src/struct_mv/box_manager.c | 16 +-
src/struct_mv/boxloop.h | 388 ++
src/struct_mv/boxloop_cuda.h | 717 +++
src/struct_mv/boxloop_kokkos.h | 542 ++
src/struct_mv/boxloop_raja.h | 845 +++
src/struct_mv/communication_info.c | 13 +-
src/struct_mv/headers | 50 +-
src/struct_mv/protos.h | 2 +-
src/struct_mv/struct_axpy.c | 16 +-
src/struct_mv/struct_communication.c | 343 +-
src/struct_mv/struct_communication.h | 5 +
src/struct_mv/struct_copy.c | 10 +-
src/struct_mv/struct_grid.c | 6 +-
src/struct_mv/struct_innerprod.c | 42 +-
src/struct_mv/struct_io.c | 46 +-
src/struct_mv/struct_matrix.c | 40 +-
src/struct_mv/struct_matvec.c | 64 +-
src/struct_mv/struct_scale.c | 3 +-
src/struct_mv/struct_vector.c | 80 +-
src/test/Makefile | 6 +
src/test/TEST_examples/complex.jobs | 2 +-
src/test/TEST_examples/maxdim.jobs | 4 +-
src/test/TEST_ij/smoother.jobs | 19 +
src/test/TEST_ij/smoother.saved | 20 +
src/test/TEST_ij/smoother.sh | 5 +
src/test/TEST_ij/solvers.jobs | 30 +
src/test/TEST_ij/solvers.saved | 82 +-
src/test/TEST_ij/solvers.sh | 39 +
.../solvers_ij.jobs} | 64 +-
src/test/TEST_longdouble/solvers_ij.saved | 145 +
.../solvers.sh => TEST_longdouble/solvers_ij.sh} | 0
src/test/TEST_longdouble/solvers_struct.jobs | 63 +
src/test/TEST_longdouble/solvers_struct.saved | 120 +
.../solvers_struct.sh} | 0
.../solvers.jobs => TEST_single/solvers_ij.jobs} | 64 +-
src/test/TEST_single/solvers_ij.saved | 145 +
.../solvers.sh => TEST_single/solvers_ij.sh} | 7 +-
src/test/TEST_single/solvers_struct.jobs | 63 +
src/test/TEST_single/solvers_struct.saved | 120 +
.../solvers.sh => TEST_single/solvers_struct.sh} | 4 +-
src/test/TEST_sstruct/solvers.saved | 80 +-
src/test/TEST_struct/solvers.saved | 120 +-
src/test/ams_driver.c | 4 +-
src/test/for_maxwell.c | 2 +-
src/test/ij.c | 1304 +++--
src/test/maxwell_unscaled.c | 5 +-
src/test/runtest.sh | 2 +-
src/test/sstruct.c | 12 +-
src/test/struct.c | 68 +-
src/test/struct_migrate.c | 24 +-
src/test/struct_newboxloop.c | 1956 +++++++
src/test/zboxloop.c | 30 +-
src/utilities/HYPRE_utilities.h | 36 +-
src/utilities/Makefile | 4 +-
src/utilities/_hypre_utilities.h | 633 ++-
src/utilities/amg_linklist.h | 3 +-
src/utilities/caliper_instrumentation.h | 1 +
src/utilities/exchange_data.h | 9 +-
src/utilities/general.h | 11 +-
.../ml_superlu_lapack.h => utilities/gpgpu.h} | 21 +-
src/utilities/gpuErrorCheck.c | 111 +
src/utilities/gpuErrorCheck.h | 153 +
src/utilities/gpuMem.c | 513 ++
src/utilities/gpuMem.h | 104 +
src/utilities/headers | 23 +-
src/utilities/hypre_error.h | 3 +-
src/utilities/hypre_memory.c | 244 +-
src/utilities/hypre_memory.h | 185 +
src/utilities/hypre_nvtx.h | 72 +
src/utilities/hypre_printf.c | 46 +-
src/utilities/mpistubs.c | 2 +-
src/utilities/mpistubs.h | 45 +-
src/utilities/protos.h | 221 +
src/utilities/random.c | 53 +-
src/utilities/threading.h | 1 +
src/utilities/timing.c | 4 +-
src/utilities/timing.h | 3 +-
729 files changed, 27845 insertions(+), 139059 deletions(-)
delete mode 100755 AUTOTEST/autotest.sh
rename AUTOTEST/{basictest.sh => basic.sh} (94%)
rename AUTOTEST/{cmaketest.sh => cmake.sh} (98%)
delete mode 100644 AUTOTEST/cronfile
rename AUTOTEST/{machine-rzmerl.sh => machine-rztopaz.sh} (73%)
rename AUTOTEST/{machine-rzzeus.sh => machine-syrah.sh} (74%)
copy AUTOTEST/{machine-vulcan.sh => machine-tux-exlibs.sh} (57%)
delete mode 100755 AUTOTEST/testdist.sh
delete mode 100755 AUTOTEST/testsrc.sh
delete mode 100644 debian/patches/cmake-install.patch
delete mode 100644 debian/patches/cmake.patch
delete mode 100644 debian/patches/config-for-petsc.patch
delete mode 100644 debian/patches/config-update-dir.patch
delete mode 100644 debian/patches/examples.patch
delete mode 100644 debian/patches/fgmres-lib.patch
delete mode 100644 debian/patches/flexgmres-to-parcsr_ls.patch
delete mode 100644 debian/patches/install-libs.patch
create mode 100644 debian/patches/pilut_blas_mangle.patch
delete mode 100644 debian/patches/superlu_internal.patch
delete mode 100644 debian/source/lintian-overrides
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/Cnames.h
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/Makefile
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/caxpy.c
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/ccopy.c
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/cdotc.c
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/cgemv.c
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/cgerc.c
delete mode 100644 src/FEI_mv/DSuperLU/CBLAS/cgeru.c
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delete mode 100644 src/FEI_mv/SuperLU/SRC/zsp_blas3.c
delete mode 100644 src/FEI_mv/SuperLU/SRC/zutil.c
delete mode 100644 src/FEI_mv/SuperLU/make.inc
create mode 100644 src/blas/_hypre_blas.h
delete mode 100644 src/blas/blas_utils.c
create mode 100644 src/blas/f2c.c
create mode 100644 src/blas/lsame.c
create mode 100644 src/blas/xerbla.c
create mode 100644 src/lapack/README
create mode 100644 src/lapack/_hypre_lapack.h
delete mode 100644 src/lapack/lapack_utils.c
create mode 100644 src/parcsr_ls/HYPRE_parcsr_mgr.c
create mode 100644 src/parcsr_ls/par_cheby.c
create mode 100644 src/parcsr_ls/par_mgr.c
create mode 100644 src/parcsr_ls/par_mgr.h
create mode 100644 src/parcsr_ls/par_mgr_setup.c
create mode 100644 src/parcsr_ls/par_mgr_solve.c
copy src/parcsr_ls/{par_vardifconv.c => par_vardifconv_rs.c} (61%)
copy src/{FEI_mv/fei-hypre/dsuperlu_include.h => seq_mv/Makefile.empty} (100%)
create mode 100644 src/seq_mv/Makefile.nvcc
create mode 100644 src/seq_mv/gpukernels.cu
create mode 100644 src/seq_mv/gpukernels.h
create mode 100644 src/struct_mv/boxloop.h
create mode 100644 src/struct_mv/boxloop_cuda.h
create mode 100644 src/struct_mv/boxloop_kokkos.h
create mode 100644 src/struct_mv/boxloop_raja.h
copy src/test/{TEST_ij/solvers.jobs => TEST_longdouble/solvers_ij.jobs} (50%)
create mode 100644 src/test/TEST_longdouble/solvers_ij.saved
copy src/test/{TEST_ij/solvers.sh => TEST_longdouble/solvers_ij.sh} (100%)
create mode 100644 src/test/TEST_longdouble/solvers_struct.jobs
create mode 100644 src/test/TEST_longdouble/solvers_struct.saved
copy src/test/{TEST_struct/solvers.sh => TEST_longdouble/solvers_struct.sh} (100%)
copy src/test/{TEST_ij/solvers.jobs => TEST_single/solvers_ij.jobs} (50%)
create mode 100644 src/test/TEST_single/solvers_ij.saved
copy src/test/{TEST_ij/solvers.sh => TEST_single/solvers_ij.sh} (92%)
create mode 100755 src/test/TEST_single/solvers_struct.jobs
create mode 100644 src/test/TEST_single/solvers_struct.saved
copy src/test/{TEST_struct/solvers.sh => TEST_single/solvers_struct.sh} (97%)
create mode 100644 src/test/struct_newboxloop.c
copy src/{FEI_mv/ml/src/Include/ml_superlu_lapack.h => utilities/gpgpu.h} (72%)
create mode 100644 src/utilities/gpuErrorCheck.c
create mode 100644 src/utilities/gpuErrorCheck.h
create mode 100644 src/utilities/gpuMem.c
create mode 100644 src/utilities/gpuMem.h
create mode 100644 src/utilities/hypre_nvtx.h
create mode 100644 src/utilities/protos.h
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