[pyfai] branch master updated (a069f00 -> 4082d2d)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Sun Jan 1 10:55:36 UTC 2017
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch master
in repository pyfai.
from a069f00 release
new 45af281 pre 0.13
adds d35d2bb New upstream version 0.13.0+dfsg
new 8d96018 Merge tag 'upstream/0.13.0+dfsg'
new 69fe9f7 update copyright for 0.13
new 204c5b3 refresh patch series
new d4413bb release
new 4082d2d unactivate the test except for python2 for now
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
MANIFEST.in | 13 +-
PKG-INFO | 31 +-
README.rst | 25 +-
TODO.txt | 38 -
benchmark/Fairchild.poni | 9 -
benchmark/Frelon2k.poni | 10 -
benchmark/Mar3450.poni | 11 -
benchmark/Pilatus1M.poni | 10 -
benchmark/Pilatus6M.poni | 10 -
benchmark/benchmark.py | 601 -
benchmark/benchmark_distortion.py | 75 -
benchmark/benchmark_ocl_csr3.py | 451 -
benchmark/benchmark_split.py | 777 --
benchmark/frelon.spline | 111 -
benchmark/halfccd.poni | 10 -
benchmark/halfccd.spline | 29 -
bootstrap.py | 84 +-
build-deb7.sh | 2 +-
build-deb8.sh | 25 +-
copyright | 28 +-
debian/changelog | 6 +
debian/copyright | 30 +-
.../0001-remove-useless-logic-in-conf.py.patch | 43 -
debian/patches/0002-skip-test-if-no-network.patch | 142 -
debian/patches/0003-use-the-system-mathjax.patch | 4 +-
...t-use-deprecated-sphinx-pngmath-extension.patch | 29 -
debian/patches/series | 3 -
debian/rules | 5 +-
doc/MX-calibrate.1 | 4 +-
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doc/build/_sources/coverage.txt | 46 +
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doc/build/_static/jquery.js | 9404 ++++++++++++++
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doc/build/_static/pygments.css | 63 +
doc/build/_static/searchtools.js | 622 +
doc/build/_static/sidebar.js | 159 +
doc/build/_static/underscore.js | 1415 ++
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doc/build/_static/up.png | Bin 0 -> 363 bytes
doc/build/_static/websupport.js | 808 ++
doc/build/api/modules.html | 169 +
doc/build/api/pyFAI.html | 12084 +++++++++++++++++
doc/build/biblio.html | 258 +
doc/build/calibration.html | 248 +
doc/build/changelog.html | 486 +
doc/build/coverage.html | 324 +
doc/build/design/ai.html | 262 +
doc/build/design/index.html | 136 +
doc/build/detector.html | 225 +
doc/build/ecosystem.html | 302 +
doc/build/genindex.html | 5610 ++++++++
doc/build/geometry.html | 220 +
doc/build/index.html | 166 +
doc/build/man/MX-calibrate.html | 422 +
doc/build/man/check_calib.html | 162 +
doc/build/man/detector2nexus.html | 237 +
doc/build/man/diff_map.html | 323 +
doc/build/man/diff_tomo.html | 272 +
doc/build/man/pyFAI-average.html | 236 +
doc/build/man/pyFAI-calib.html | 537 +
doc/build/man/pyFAI-drawmask.html | 181 +
doc/build/man/pyFAI-integrate.html | 217 +
doc/build/man/pyFAI-recalib.html | 231 +
doc/build/man/pyFAI-saxs.html | 256 +
doc/build/man/pyFAI-waxs.html | 278 +
doc/build/man/scripts.html | 163 +
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doc/build/operations/macosx.html | 205 +
doc/build/operations/windows.html | 302 +
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doc/build/search.html | 106 +
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.../tutorial/CCD_Calibration/CCD_calibration.html | 819 ++
doc/build/usage/tutorial/Calibrant/index.html | 312 +
.../usage/tutorial/Distortion/Distortion.html | 530 +
.../usage/tutorial/Introduction/introduction.html | 525 +
.../tutorial/MakeCalibrant/make_calibrant.html | 423 +
doc/build/usage/tutorial/MultiGeometry/index.html | 521 +
doc/build/usage/tutorial/index.html | 135 +
doc/build/usage/tutorial/multi-geometry.html | 210 +
doc/check_calib.1 | 7 +-
doc/check_calib.pdf | Bin 4188 -> 4229 bytes
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doc/diff_map.pdf | Bin 5933 -> 6045 bytes
doc/diff_tomo.1 | 16 +-
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doc/drawMask_pymca.pdf | Bin 4019 -> 0 bytes
doc/eiger-mask.1 | 18 +-
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doc/mathematica/geometry.txt | 212 +
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doc/pyFAI-average.pdf | Bin 4593 -> 5072 bytes
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doc/pyFAI-benchmark.pdf | Bin 0 -> 4058 bytes
doc/pyFAI-calib.1 | 10 +-
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doc/pyFAI-recalib.1 | 13 +-
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doc/pyFAI-saxs.1 | 11 +-
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doc/pyFAI-waxs.1 | 13 +-
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doc/pyFAI.pdf | Bin 5048164 -> 6147313 bytes
doc/source/api/modules.rst | 9 +-
doc/source/api/pyFAI.rst | 200 +-
doc/source/biblio.rst | 3 +
doc/source/calibration.rst | 28 +-
doc/source/changelog.rst | 35 +
doc/source/conf.py | 62 +-
doc/source/coverage.rst | 66 +-
doc/source/design/ai.rst | 5 +-
doc/source/detector.rst | 32 +-
doc/source/ecosystem.rst | 24 +-
doc/source/geometry.rst | 33 +-
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doc/source/img/quad_model.svg | 233 +
doc/source/index.rst | 7 +-
doc/source/man/detector2nexus.rst | 2 +-
doc/source/man/diff_map.rst | 3 +-
doc/source/man/diff_tomo.rst | 5 +-
doc/source/man/pyFAI-calib.rst | 1 +
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doc/source/man/scripts.rst | 4 +-
doc/source/operations/linux.rst | 6 +-
doc/source/operations/macosx.rst | 2 +-
doc/source/operations/windows.rst | 4 +-
doc/source/project.rst | 68 +-
doc/source/publications.rst | 9 +-
doc/source/pyFAI.rst | 28 +-
doc/source/usage/cookbook/calibrate.rst | 11 +-
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doc/source/usage/tutorial/Geometry/geometry.ipynb | 544 +
doc/source/usage/tutorial/Geometry/geometry.rst | 328 +
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doc/source/usage/tutorial/MultiGeometry/index.rst | 1 +
doc/source/usage/tutorial/index.rst | 1 +
package/debian/changelog | 55 -
package/debian/compat | 1 -
package/debian/control | 248 -
package/debian/gbp.conf | 2 -
package/debian/python-pyfai-doc.doc-base | 9 -
package/debian/rules | 48 -
package/debian/source/format | 1 -
package/debian/watch | 5 -
pyFAI.egg-info/PKG-INFO | 31 +-
pyFAI.egg-info/SOURCES.txt | 180 +-
pyFAI/OCLFullSplit.py | 141 +-
pyFAI/__init__.py | 20 +-
pyFAI/average.py | 1038 ++
pyFAI/azimuthalIntegrator.py | 1753 ++-
pyFAI/benchmark/__init__.py | 351 +-
pyFAI/blob_detection.py | 266 +-
pyFAI/calibrant.py | 128 +-
pyFAI/calibration.py | 210 +-
pyFAI/containers.py | 289 +
pyFAI/decorators.py | 9 +-
pyFAI/detectors.py | 310 +-
pyFAI/diffmap.py | 49 +-
pyFAI/diffmap_widget.py | 147 +-
pyFAI/directories.py | 15 +-
pyFAI/distortion.py | 164 +-
pyFAI/ext/_bispev.c | 358 +-
pyFAI/ext/_bispev.pyx | 2 +-
pyFAI/ext/_blob.c | 875 +-
pyFAI/ext/_blob.pyx | 25 +-
pyFAI/ext/_convolution.c | 7814 +++++------
pyFAI/ext/_convolution.pyx | 43 +-
pyFAI/ext/_distortion.c | 7023 +++++-----
pyFAI/ext/_distortion.pyx | 183 +-
pyFAI/ext/_geometry.c | 11265 +++++++---------
pyFAI/ext/_geometry.pyx | 328 +-
pyFAI/ext/_tree.c | 1792 +--
pyFAI/ext/_tree.pyx | 20 +-
pyFAI/ext/bilinear.c | 8789 +++++--------
pyFAI/ext/bilinear.pxi | 2 +-
pyFAI/ext/bilinear.pyx | 32 +-
pyFAI/ext/crc32.pxd | 2 +-
pyFAI/ext/fastcrc.c | 350 +-
pyFAI/ext/fastcrc.pyx | 2 +-
pyFAI/ext/histogram.c | 34 +-
pyFAI/ext/histogram.pyx | 2 +-
pyFAI/ext/histogram_nomp.pxi | 2 +-
pyFAI/ext/histogram_omp.pxi | 2 +-
pyFAI/ext/marchingsquares.c | 7674 +++++------
pyFAI/ext/morphology.c | 7391 +++++------
pyFAI/ext/morphology.pyx | 99 +-
pyFAI/ext/{histogram.c => preproc.c} | 9141 +++++++------
pyFAI/ext/preproc.pyx | 251 +
pyFAI/ext/reconstruct.c | 6860 ++++------
pyFAI/ext/reconstruct.pyx | 35 +-
pyFAI/ext/regrid_common.pxi | 2 +-
pyFAI/ext/relabel.c | 6822 ++++------
pyFAI/ext/relabel.pyx | 29 +-
pyFAI/ext/sparse_common.pxi | 2 +-
pyFAI/ext/sparse_utils.c | 6470 ++++------
pyFAI/ext/sparse_utils.pyx | 8 +-
pyFAI/ext/splitBBox.c | 8130 +++++-------
pyFAI/ext/splitBBox.pyx | 44 +-
pyFAI/ext/splitBBoxCSR.c | 12904 +++++++------------
pyFAI/ext/splitBBoxCSR.pyx | 34 +-
pyFAI/ext/splitBBoxLUT.c | 518 +-
pyFAI/ext/splitBBoxLUT.pyx | 54 +-
pyFAI/ext/splitPixel.c | 9186 +++++--------
pyFAI/ext/splitPixel.pyx | 42 +-
pyFAI/ext/splitPixelFull.c | 8800 +++++--------
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pyFAI/ext/splitPixelFullCSR.c | 9420 +++++---------
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pyFAI/ext/splitPixelFullLUT_double.c | 542 +-
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pyFAI/ext/watershed.pyx | 103 +-
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pyFAI/gui/_pyside_dynamic.py | 158 +
pyFAI/gui/matplotlib.py | 68 +
pyFAI/gui/qt.py | 211 +
pyFAI/gui/utils.py | 81 +
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pyFAI/io.py | 453 +-
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pyFAI/ocl_azim_csr_dis.py | 31 +-
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pyFAI/opencl.py | 179 +-
pyFAI/orderedset.py | 7 +-
pyFAI/peak_picker.py | 161 +-
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pyFAI/refinment2D.py | 260 -
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{calibration => pyFAI/resources/calibration}/ZnO.D | 0
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{gui => pyFAI/resources/gui}/diffmap.ui | 0
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{openCL => pyFAI/resources/openCL}/ocl_azim_LUT.cl | 0
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{openCL => pyFAI/resources/openCL}/ocl_bispev.cl | 0
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{openCL => pyFAI/resources/openCL}/ocl_lut.cl | 0
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.../resources/openCL}/ocl_lut_pixelsplit3.cl | 0
.../resources/openCL}/ocl_lut_pixelsplit_test.cl | 0
{openCL => pyFAI/resources/openCL}/preprocess.cl | 0
.../resources/openCL}/reduction_test.cl | 0
.../resources/openCL}/reduction_test4.cl | 0
{openCL => pyFAI/resources/openCL}/separate.cl | 2 +-
pyFAI/spline.py | 265 +-
pyFAI/test/__init__.py | 6 +-
pyFAI/test/test_all.py | 19 +-
pyFAI/test/test_average.py | 296 +
pyFAI/test/test_azimuthal_integrator.py | 116 +-
pyFAI/test/test_bayes.py | 107 +
pyFAI/test/test_bilinear.py | 32 +-
pyFAI/test/test_bispev.py | 18 +-
pyFAI/test/test_blob_detection.py | 16 +-
pyFAI/test/test_bug_regression.py | 46 +-
pyFAI/test/test_calibrant.py | 38 +-
pyFAI/test/test_convolution.py | 14 +-
pyFAI/test/test_csr.py | 35 +-
pyFAI/test/test_detector.py | 37 +-
pyFAI/test/test_distortion.py | 55 +-
pyFAI/test/test_dummy.py | 7 +-
pyFAI/test/test_export.py | 33 +-
pyFAI/test/test_flat.py | 56 +-
pyFAI/test/test_geometry.py | 140 +-
pyFAI/test/test_geometry_refinement.py | 10 +-
pyFAI/test/test_histogram.py | 126 +-
pyFAI/test/test_integrate.py | 160 +-
pyFAI/test/test_integrate_widget.py | 37 +-
pyFAI/test/test_io.py | 29 +-
pyFAI/test/test_marchingsquares.py | 20 +-
pyFAI/test/test_mask.py | 56 +-
pyFAI/test/test_multi_geometry.py | 70 +-
pyFAI/test/test_ocl_sort.py | 29 +-
pyFAI/test/test_openCL.py | 93 +-
pyFAI/test/test_peak_picking.py | 47 +-
pyFAI/test/test_polarization.py | 35 +-
pyFAI/test/test_preproc.py | 111 +
pyFAI/test/test_saxs.py | 36 +-
pyFAI/test/test_scripts.py | 149 +
pyFAI/test/test_sparse.py | 44 +-
pyFAI/test/test_split_pixel.py | 84 +-
pyFAI/test/test_utils.py | 71 +-
pyFAI/test/{test_dummy.py => test_utils_shell.py} | 42 +-
pyFAI/test/test_utils_stringutil.py | 80 +
pyFAI/test/test_watershed.py | 10 +-
pyFAI/test/test_worker.py | 86 +-
pyFAI/test/utilstest.py | 92 +-
pyFAI/tree.py | 22 +-
pyFAI/units.py | 342 +-
pyFAI/{utils.py => utils/__init__.py} | 740 +-
pyFAI/utils/bayes.py | 263 +
pyFAI/utils/shell.py | 129 +
pyFAI/{decorators.py => utils/stringutil.py} | 69 +-
pyFAI/worker.py | 403 +-
run_tests.py | 189 +-
scripts/MX-calibrate | 8 +-
scripts/check_calib | 21 +-
scripts/diff_map | 6 +-
scripts/drawMask_pymca | 96 -
scripts/eiger-mask | 24 +-
scripts/pyFAI-average | 235 +-
scripts/pyFAI-benchmark | 8 +-
scripts/pyFAI-calib | 11 +-
scripts/pyFAI-drawmask | 235 +
scripts/pyFAI-integrate | 128 +-
scripts/pyFAI-recalib | 8 +-
scripts/pyFAI-waxs | 6 +-
setup.py | 153 +-
version.py | 75 +-
510 files changed, 115084 insertions(+), 97428 deletions(-)
delete mode 100644 TODO.txt
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copy doc/{source/usage/cookbook/integration_with_python.rst => build/_sources/usage/cookbook/integration_with_python.txt} (62%)
copy doc/{source/usage/cookbook/integration_with_scripts.rst => build/_sources/usage/cookbook/integration_with_scripts.txt} (54%)
copy doc/{source/usage/cookbook/integration_with_the_gui.rst => build/_sources/usage/cookbook/integration_with_the_gui.txt} (100%)
copy doc/{source/usage/tutorial/CCD_Calibration/CCD_calibration.rst => build/_sources/usage/tutorial/CCD_Calibration/CCD_calibration.txt} (80%)
copy doc/{source/usage/tutorial/Calibrant/index.rst => build/_sources/usage/tutorial/Calibrant/index.txt} (100%)
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copy doc/{source/usage/tutorial/Introduction/introduction.rst => build/_sources/usage/tutorial/Introduction/introduction.txt} (98%)
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create mode 100644 pyFAI/average.py
create mode 100644 pyFAI/containers.py
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create mode 100644 pyFAI/ext/preproc.pyx
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delete mode 100644 pyFAI/refinment2D.py
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rename {calibration => pyFAI/resources/calibration}/AgBh.D (100%)
rename {calibration => pyFAI/resources/calibration}/Al.D (100%)
rename {calibration => pyFAI/resources/calibration}/Au.D (100%)
rename {calibration => pyFAI/resources/calibration}/C14H30O.D (100%)
rename {calibration => pyFAI/resources/calibration}/CeO2.D (89%)
rename {calibration => pyFAI/resources/calibration}/Cr2O3.D (100%)
rename {calibration => pyFAI/resources/calibration}/CrOx.D (100%)
rename {calibration => pyFAI/resources/calibration}/CuO.D (100%)
rename {calibration => pyFAI/resources/calibration}/LaB6.D (100%)
rename {calibration => pyFAI/resources/calibration}/LaB6_SRM660a.D (100%)
rename {calibration => pyFAI/resources/calibration}/LaB6_SRM660b.D (100%)
rename {calibration => pyFAI/resources/calibration}/LaB6_SRM660c.D (100%)
rename {calibration => pyFAI/resources/calibration}/NaCl.D (100%)
rename {calibration => pyFAI/resources/calibration}/Ni.D (100%)
rename {calibration => pyFAI/resources/calibration}/PBBA.D (100%)
rename {calibration => pyFAI/resources/calibration}/Si.D (100%)
rename {calibration => pyFAI/resources/calibration}/Si_SRM640.D (100%)
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rename {calibration => pyFAI/resources/calibration}/TiO2.D (100%)
rename {calibration => pyFAI/resources/calibration}/ZnO.D (100%)
rename {calibration => pyFAI/resources/calibration}/alpha_Al2O3.D (100%)
rename {calibration => pyFAI/resources/calibration}/cristobaltite.D (100%)
rename calibration/moke.D => pyFAI/resources/calibration/mock.D (88%)
rename {calibration => pyFAI/resources/calibration}/quartz.D (100%)
rename {gui => pyFAI/resources/gui}/diffmap.ui (100%)
rename {gui => pyFAI/resources/gui}/integration.ui (100%)
rename {gui => pyFAI/resources/gui}/refine-6param.ui (100%)
rename {openCL => pyFAI/resources/openCL}/bitonic.cl (100%)
rename {openCL => pyFAI/resources/openCL}/for_eclipse.h (97%)
rename {openCL => pyFAI/resources/openCL}/ocl_azim_CSR.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_azim_LUT.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_azim_kernel2d_2.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_azim_kernel_2.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_bispev.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_hist_pixelsplit.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_lut.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_lut_pixelsplit.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_lut_pixelsplit2.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_lut_pixelsplit3.cl (100%)
rename {openCL => pyFAI/resources/openCL}/ocl_lut_pixelsplit_test.cl (100%)
rename {openCL => pyFAI/resources/openCL}/preprocess.cl (100%)
rename {openCL => pyFAI/resources/openCL}/reduction_test.cl (100%)
rename {openCL => pyFAI/resources/openCL}/reduction_test4.cl (100%)
rename {openCL => pyFAI/resources/openCL}/separate.cl (98%)
create mode 100644 pyFAI/test/test_average.py
create mode 100644 pyFAI/test/test_bayes.py
create mode 100644 pyFAI/test/test_preproc.py
create mode 100644 pyFAI/test/test_scripts.py
copy pyFAI/test/{test_dummy.py => test_utils_shell.py} (66%)
create mode 100644 pyFAI/test/test_utils_stringutil.py
rename pyFAI/{utils.py => utils/__init__.py} (52%)
create mode 100644 pyFAI/utils/bayes.py
create mode 100644 pyFAI/utils/shell.py
copy pyFAI/{decorators.py => utils/stringutil.py} (53%)
delete mode 100755 scripts/drawMask_pymca
mode change 100644 => 100755 scripts/pyFAI-benchmark
create mode 100755 scripts/pyFAI-drawmask
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