[r-cran-vgam] 38/63: Import Debian patch 0.9-4-1
Andreas Tille
tille at debian.org
Tue Jan 24 13:54:36 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-vgam.
commit 93f535a537d1d1fb4ba8738ecef5a5e478081321
Merge: 18629bd b219bd7
Author: Chris Lawrence <lawrencc at debian.org>
Date: Wed May 28 18:37:59 2014 -0400
Import Debian patch 0.9-4-1
BUGS | 9 +
DESCRIPTION | 29 +-
MD5 | 771 +++++----
NAMESPACE | 33 +-
NEWS | 54 +-
R/Links.R | 14 +-
R/aamethods.q | 118 +-
R/add1.vglm.q | 2 +-
R/attrassign.R | 4 +-
R/bAIC.q | 16 +-
R/build.terms.vlm.q | 11 +-
R/calibrate.q | 4 +-
R/cao.R | 2 +-
R/cao.fit.q | 104 +-
R/coef.vlm.q | 37 +-
R/cqo.R | 2 +-
R/cqo.fit.q | 104 +-
R/deviance.vlm.q | 44 +-
R/effects.vglm.q | 15 +-
R/family.actuary.R | 1089 ++++++++----
R/family.aunivariate.R | 536 ++++--
R/family.basics.R | 244 ++-
R/family.binomial.R | 395 +++--
R/family.bivariate.R | 625 +++++--
R/family.categorical.R | 517 +++---
R/family.censored.R | 82 +-
R/family.circular.R | 56 +-
R/family.exp.R | 16 +-
R/family.extremes.R | 240 ++-
R/family.functions.R | 19 +-
R/family.genetic.R | 16 +-
R/family.glmgam.R | 583 ++++---
R/family.loglin.R | 109 +-
R/family.math.R | 10 +-
R/family.mixture.R | 90 +-
R/family.nonlinear.R | 12 +-
R/family.normal.R | 777 ++++++---
R/family.others.R | 156 +-
R/family.positive.R | 344 ++--
R/family.qreg.R | 685 +++++---
R/family.quantal.R | 81 +-
R/family.rcim.R | 38 +-
R/family.rcqo.R | 2 +-
R/family.robust.R | 75 +-
R/family.rrr.R | 1124 ++++++------
R/family.sur.R | 36 +-
R/family.survival.R | 56 +-
R/family.ts.R | 50 +-
R/family.univariate.R | 3170 ++++++++++++++++++++++++----------
R/family.vglm.R | 2 +-
R/family.zeroinf.R | 1293 +++++++++-----
R/fittedvlm.R | 6 +-
R/formula.vlm.q | 93 +-
R/generic.q | 2 +-
R/links.q | 20 +-
R/logLik.vlm.q | 28 +-
R/lrwaldtest.R | 2 +-
R/model.matrix.vglm.q | 78 +-
R/mux.q | 42 +-
R/nobs.R | 2 +-
R/plot.vglm.q | 6 +-
R/predict.vgam.q | 32 +-
R/predict.vglm.q | 2 +-
R/predict.vlm.q | 56 +-
R/print.vglm.q | 2 +-
R/print.vlm.q | 2 +-
R/qrrvglm.control.q | 51 +-
R/qtplot.q | 2 +-
R/residuals.vlm.q | 2 +-
R/rrvglm.R | 2 +-
R/rrvglm.control.q | 4 +-
R/rrvglm.fit.q | 365 ++--
R/s.q | 2 +-
R/s.vam.q | 46 +-
R/simulate.vglm.R | 62 +
R/smart.R | 40 +-
R/step.vglm.q | 2 +-
R/summary.vgam.q | 2 +-
R/summary.vglm.q | 2 +-
R/summary.vlm.q | 40 +-
R/vgam.R | 2 +-
R/vgam.control.q | 4 +-
R/vgam.fit.q | 190 +-
R/vgam.match.q | 4 +-
R/vglm.R | 2 +-
R/vglm.control.q | 2 +-
R/vglm.fit.q | 371 ++--
R/vlm.R | 8 +-
R/vlm.wfit.q | 24 +-
R/vsmooth.spline.q | 24 +-
build/vignette.rds | Bin 380 -> 0 bytes
data/Huggins89.t1.rda | Bin 441 -> 443 bytes
data/Huggins89table1.rda | Bin 443 -> 444 bytes
data/cfibrosis.rda | Bin 0 -> 264 bytes
data/lakeO.rda | Bin 0 -> 335 bytes
data/prinia.rda | Bin 1229 -> 1230 bytes
data/wine.rda | Bin 0 -> 269 bytes
debian/changelog | 6 +
demo/binom2.or.R | 45 +-
demo/cqo.R | 129 +-
demo/distributions.R | 40 +-
demo/lmsqreg.R | 41 +-
demo/vgam.R | 22 +-
demo/zipoisson.R | 37 +-
inst/doc/categoricalVGAM.R | 278 ---
inst/doc/categoricalVGAM.Rnw | 2323 -------------------------
inst/doc/categoricalVGAM.pdf | Bin 642552 -> 0 bytes
man/AB.Ab.aB.ab.Rd | 2 +-
man/ABO.Rd | 2 +-
man/AICvlm.Rd | 4 +-
man/BICvlm.Rd | 4 +-
man/Coef.qrrvglm-class.Rd | 4 +-
man/Coef.qrrvglm.Rd | 8 +-
man/Coef.rrvglm-class.Rd | 2 +-
man/Coef.rrvglm.Rd | 2 +-
man/CommonVGAMffArguments.Rd | 26 +-
man/G1G2G3.Rd | 2 +-
man/Huggins89.t1.Rd | 36 +-
man/Inv.gaussian.Rd | 4 +-
man/Links.Rd | 6 +-
man/MNSs.Rd | 1 +
man/QvarUC.Rd | 8 +-
man/Select.Rd | 262 +++
man/SurvS4-class.Rd | 4 +
man/SurvS4.Rd | 6 +-
man/Tol.Rd | 12 +-
man/VGAM-package.Rd | 4 +-
man/acat.Rd | 3 +-
man/alaplace3.Rd | 21 +-
man/amh.Rd | 3 +-
man/amlbinomial.Rd | 9 +-
man/amlnormal.Rd | 11 +-
man/amlpoisson.Rd | 1 +
man/benfUC.Rd | 3 +-
man/benini.Rd | 2 +-
man/beta.ab.Rd | 9 +-
man/betaII.Rd | 4 +-
man/betabinomUC.Rd | 4 +-
man/betabinomial.Rd | 5 +-
man/betabinomial.ab.Rd | 3 +-
man/betaff.Rd | 5 +-
man/betageomUC.Rd | 4 +-
man/betageometric.Rd | 4 +-
man/betaprime.Rd | 1 +
man/{frank.Rd => bifrankcop.Rd} | 3 +-
man/{frankUC.Rd => bifrankcopUC.Rd} | 0
man/bigumbelI.Rd | 4 +-
man/bilogistic4.Rd | 2 +-
man/binom2.or.Rd | 2 +-
man/binom2.orUC.Rd | 6 +-
man/binom2.rhoUC.Rd | 8 +-
man/binomialff.Rd | 4 +-
man/binormal.Rd | 2 +-
man/binormalUC.Rd | 5 +-
man/binormalcop.Rd | 2 +-
man/bistudenttUC.Rd | 6 +-
man/bivgamma.mckay.Rd | 2 +-
man/borel.tanner.Rd | 12 +-
man/bortUC.Rd | 36 +-
man/calibrate.qrrvglm.Rd | 8 +-
man/calibrate.qrrvglm.control.Rd | 4 +-
man/cao.Rd | 3 +-
man/cao.control.Rd | 14 +-
man/cardioid.Rd | 2 +-
man/cauchy.Rd | 32 +-
man/cennormal.Rd | 6 +-
man/cenpoisson.Rd | 8 +-
man/cfibrosis.Rd | 71 +
man/cgumbel.Rd | 2 +-
man/chinese.nz.Rd | 9 +-
man/chisq.Rd | 2 +-
man/clo.Rd | 3 +
man/cloglog.Rd | 13 +-
man/coalminers.Rd | 7 +
man/coefvlm.Rd | 100 ++
man/concoef.Rd | 4 +-
man/constraints.Rd | 15 +-
man/cqo.Rd | 96 +-
man/cratio.Rd | 2 +-
man/cumulative.Rd | 15 +-
man/dagum.Rd | 7 +-
man/depvar.Rd | 2 +-
man/df.residual.Rd | 2 +-
man/dirichlet.Rd | 15 +-
man/dirmultinomial.Rd | 20 +-
man/double.cennormal.Rd | 2 +-
man/enzyme.Rd | 2 +
man/erlang.Rd | 5 +-
man/eunifUC.Rd | 2 +
man/expexp.Rd | 2 +-
man/exponential.Rd | 11 +-
man/felix.Rd | 6 +-
man/felixUC.Rd | 16 +-
man/fff.Rd | 2 +-
man/fgm.Rd | 3 +-
man/fgmUC.Rd | 1 +
man/fill.Rd | 67 +-
man/fisk.Rd | 7 +-
man/fittedvlm.Rd | 2 +-
man/foldnormal.Rd | 19 +-
man/frechet.Rd | 2 +-
man/frechetUC.Rd | 2 +
man/freund61.Rd | 2 +-
man/fsqrt.Rd | 2 +-
man/gamma1.Rd | 5 +-
man/gamma2.Rd | 9 +-
man/gamma2.ab.Rd | 9 +-
man/gammahyp.Rd | 4 +-
man/garma.Rd | 15 +-
man/genbetaII.Rd | 2 +-
man/gengamma.Rd | 9 +-
man/genpoisson.Rd | 10 +-
man/geometric.Rd | 9 +-
man/get.smart.Rd | 35 +-
man/get.smart.prediction.Rd | 26 +-
man/gev.Rd | 10 +-
man/gompertz.Rd | 3 +-
man/gpd.Rd | 12 +-
man/grc.Rd | 183 +-
man/gumbel.Rd | 82 +-
man/gumbelII.Rd | 8 +-
man/hormone.Rd | 4 +-
man/huber.Rd | 16 +-
man/hypersecant.Rd | 8 +-
man/hzeta.Rd | 7 +-
man/hzetaUC.Rd | 26 +-
man/iam.Rd | 4 +-
man/{identity.Rd => identitylink.Rd} | 18 +-
man/inv.gaussianff.Rd | 4 +-
man/invbinomial.Rd | 8 +-
man/invlomax.Rd | 7 +-
man/invlomaxUC.Rd | 4 +-
man/invparalogistic.Rd | 7 +-
man/invparalogisticUC.Rd | 2 +-
man/is.parallel.Rd | 4 +-
man/is.smart.Rd | 16 +-
man/koenker.Rd | 8 +-
man/kumar.Rd | 6 +-
man/lakeO.Rd | 110 ++
man/laplace.Rd | 6 +-
man/leipnik.Rd | 6 +-
man/levy.Rd | 4 +-
man/lgammaff.Rd | 6 +-
man/lindUC.Rd | 8 +-
man/lindley.Rd | 3 +-
man/lino.Rd | 14 +-
man/lms.bcg.Rd | 9 +-
man/lms.bcn.Rd | 16 +-
man/lms.yjn.Rd | 27 +-
man/logF.Rd | 3 +
man/logF.UC.Rd | 7 +-
man/logLikvlm.Rd | 113 ++
man/logUC.Rd | 5 +-
man/logff.Rd | 14 +-
man/logistic.Rd | 11 +-
man/loglapUC.Rd | 5 +-
man/loglaplace.Rd | 51 +-
man/lognormal.Rd | 20 +-
man/lomax.Rd | 5 +-
man/lomaxUC.Rd | 9 +-
man/lqnorm.Rd | 4 +-
man/lrtest.Rd | 6 +-
man/lvplot.qrrvglm.Rd | 35 +-
man/lvplot.rrvglm.Rd | 7 +-
man/makeham.Rd | 3 +-
man/margeff.Rd | 4 +-
man/maxwell.Rd | 2 +-
man/mccullagh89.Rd | 2 +-
man/micmen.Rd | 5 +-
man/mix2exp.Rd | 7 +-
man/mix2normal.Rd | 14 +-
man/mix2poisson.Rd | 9 +-
man/mlogit.Rd | 2 +-
man/model.framevlm.Rd | 2 +
man/morgenstern.Rd | 4 +-
man/multinomial.Rd | 7 +-
man/nakagami.Rd | 6 +-
man/nbcanlink.Rd | 2 +-
man/negbinomial.Rd | 55 +-
man/negbinomial.size.Rd | 9 +-
man/normal.vcm.Rd | 15 +-
man/notdocumentedyet.Rd | 32 +-
man/paralogistic.Rd | 6 +-
man/paralogisticUC.Rd | 2 +-
man/paretoff.Rd | 4 +-
man/perks.Rd | 3 +-
man/persp.qrrvglm.Rd | 6 +-
man/plotqrrvglm.Rd | 6 +-
man/plotqtplot.lmscreg.Rd | 2 +
man/plotrcim0.Rd | 2 +
man/plotvgam.Rd | 2 +-
man/plotvglm.Rd | 4 +-
man/pneumo.Rd | 2 +-
man/poisson.points.Rd | 6 +-
man/poisson.pointsUC.Rd | 8 +-
man/poissonff.Rd | 9 +-
man/posbernUC.Rd | 13 +-
man/posbernoulli.b.Rd | 2 +
man/posbernoulli.t.Rd | 7 +-
man/posbernoulli.tb.Rd | 3 +-
man/posbinomUC.Rd | 4 +-
man/posbinomial.Rd | 3 +-
man/posgeomUC.Rd | 6 +-
man/posnegbinUC.Rd | 3 +
man/posnegbinomial.Rd | 9 +-
man/posnormUC.Rd | 1 +
man/posnormal.Rd | 4 +-
man/pospoisson.Rd | 7 +-
man/predictqrrvglm.Rd | 15 +-
man/prentice74.Rd | 4 +-
man/prinia.Rd | 8 +-
man/propodds.Rd | 6 +-
man/prplot.Rd | 2 +-
man/put.smart.Rd | 34 +-
man/qrrvglm.control.Rd | 146 +-
man/qtplot.lmscreg.Rd | 16 +-
man/quasipoissonff.Rd | 2 +-
man/rayleigh.Rd | 11 +-
man/rayleighUC.Rd | 3 +
man/rcqo.Rd | 4 +-
man/rdiric.Rd | 36 +-
man/recexp1.Rd | 9 +-
man/recnormal.Rd | 4 +-
man/riceUC.Rd | 8 +-
man/riceff.Rd | 3 +-
man/rigff.Rd | 6 +-
man/rlplot.egev.Rd | 6 +-
man/rrvglm-class.Rd | 2 +-
man/rrvglm.Rd | 18 +-
man/rrvglm.control.Rd | 8 +-
man/seq2binomial.Rd | 3 +-
man/setup.smart.Rd | 21 +-
man/simplex.Rd | 2 +-
man/simulate.vlm.Rd | 208 +++
man/sinmad.Rd | 7 +-
man/sinmadUC.Rd | 3 +-
man/skellam.Rd | 6 +-
man/skellamUC.Rd | 9 +-
man/skewnormUC.Rd | 8 +-
man/skewnormal.Rd | 6 +-
man/slash.Rd | 9 +-
man/slashUC.Rd | 43 +-
man/smart.expression.Rd | 16 +-
man/smart.mode.is.Rd | 27 +-
man/smartpred.Rd | 211 ++-
man/sratio.Rd | 1 +
man/studentt.Rd | 13 +-
man/tikuv.Rd | 4 +-
man/tobit.Rd | 20 +-
man/tobitUC.Rd | 2 +
man/toxop.Rd | 3 +-
man/triangle.Rd | 9 +-
man/trplot.Rd | 2 +-
man/truncweibull.Rd | 2 +-
man/undocumented-methods.Rd | 7 +-
man/uninormal.Rd | 21 +-
man/vgam.Rd | 19 +-
man/vglm-class.Rd | 2 +-
man/vglm.Rd | 38 +-
man/vglm.control.Rd | 17 +-
man/vglmff-class.Rd | 11 +-
man/vonmises.Rd | 2 +-
man/waldff.Rd | 2 +-
man/weibull.Rd | 2 +-
man/weightsvglm.Rd | 2 +-
man/wine.Rd | 91 +
man/wrapup.smart.Rd | 17 +-
man/yip88.Rd | 22 +
man/yulesimon.Rd | 7 +-
man/yulesimonUC.Rd | 7 +-
man/zabinomUC.Rd | 8 +-
man/zabinomial.Rd | 2 +-
man/zageomUC.Rd | 1 +
man/zageometric.Rd | 3 +-
man/zanegbinUC.Rd | 5 +
man/zanegbinomial.Rd | 5 +-
man/zapoisUC.Rd | 4 +
man/zapoisson.Rd | 11 +-
man/zero.Rd | 10 +-
man/zetaff.Rd | 2 +-
man/zibinomUC.Rd | 2 +
man/zibinomial.Rd | 6 +-
man/zigeometric.Rd | 5 +-
man/zinegbinomial.Rd | 2 +-
man/zipebcom.Rd | 2 +-
man/zipf.Rd | 7 +-
man/zipfUC.Rd | 8 +
man/zipoisson.Rd | 15 +-
src/muxr.c | 516 ------
src/muxr3.c | 465 +++++
src/rgam3.c | 12 +-
src/vgam.f | 20 +-
src/vgam3.c | 43 +-
src/vmux.f | 28 +-
src/vmux3.c | 16 +-
vignettes/categoricalVGAM.Rnw | 2323 -------------------------
vignettes/categoricalVGAMbib.bib | 611 -------
397 files changed, 13590 insertions(+), 12833 deletions(-)
diff --cc debian/changelog
index 1e10458,0000000..a09ba73
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,135 -1,0 +1,141 @@@
++r-cran-vgam (0.9-4-1) unstable; urgency=medium
++
++ * New upstream release.
++
++ -- Chris Lawrence <lawrencc at debian.org> Wed, 28 May 2014 18:37:59 -0400
++
+r-cran-vgam (0.9-3-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 25 Feb 2014 20:46:50 -0500
+
+r-cran-vgam (0.9-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 27 Apr 2013 21:40:01 -0400
+
+r-cran-vgam (0.9-0-1) unstable; urgency=low
+
+ * New upstream release.
+ * Rebuild for R 3.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 31 Mar 2013 21:00:19 -0400
+
+r-cran-vgam (0.8-7-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 13 May 2012 22:32:15 -0400
+
+r-cran-vgam (0.8-6-1) unstable; urgency=low
+
+ * New upstream release; fixes FTBFS. (Closes: #665250)
+ + Upstream now requires R >= 2.14; build dependencies updated accordingly.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 22 Mar 2012 13:44:59 -0400
+
+r-cran-vgam (0.8-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 04 Nov 2011 13:13:06 -0400
+
+r-cran-vgam (0.8-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 17 Jul 2011 16:20:26 -0500
+
+r-cran-vgam (0.8-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 20 Feb 2011 15:37:31 -0600
+
+r-cran-vgam (0.8-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 07 Jul 2010 03:44:27 -0500
+
+r-cran-vgam (0.7-10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 30 Mar 2010 21:21:11 -0500
+
+r-cran-vgam (0.7-9-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update debian/watch.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 10 Jul 2009 21:27:58 -0500
+
+r-cran-vgam (0.7-8-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 16 Mar 2009 22:22:19 -0500
+
+r-cran-vgam (0.7-7-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 29 May 2008 06:51:02 -0500
+
+r-cran-vgam (0.7-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Mar 2008 02:04:58 -0500
+
+r-cran-vgam (0.7-5-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 06 Dec 2007 19:19:56 -0600
+
+r-cran-vgam (0.7-4-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 07 Oct 2007 20:16:15 -0500
+
+r-cran-vgam (0.7-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 14 Jun 2007 14:04:29 -0500
+
+r-cran-vgam (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 4 Feb 2007 15:28:54 -0600
+
+r-cran-vgam (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * First upload to unstable, since VGAM is now GPL'd (yeay!).
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 26 Oct 2006 22:05:10 -0500
+
+r-other-yee-vgam (0.6-9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Jun 2006 20:39:52 -0400
+
+r-other-yee-vgam (0.6-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Jul 2005 02:42:23 -0500
+
+r-other-yee-vgam (0.5-19-1) unstable; urgency=low
+
+ * Initial Debian Release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 19 Apr 2004 19:12:44 -0500
--
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