[r-cran-vgam] 40/63: Import Debian patch 0.9-5-1
Andreas Tille
tille at debian.org
Tue Jan 24 13:54:37 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-vgam.
commit 72cdf5e5e0b3beed253a8206f623a3f654882313
Merge: 93f535a e969e27
Author: Chris Lawrence <lawrencc at debian.org>
Date: Thu Nov 13 10:05:58 2014 -0500
Import Debian patch 0.9-5-1
DESCRIPTION | 15 +-
MD5 | 600 ++---
NAMESPACE | 155 +-
NEWS | 163 +-
R/aamethods.q | 45 +-
R/bAIC.q | 10 +-
R/calibrate.q | 12 +-
R/cao.R | 2 +-
R/cao.fit.q | 157 +-
R/cqo.fit.q | 8 +-
R/deviance.vlm.q | 32 +
R/family.actuary.R | 516 ++---
R/family.aunivariate.R | 354 ++-
R/family.basics.R | 178 +-
R/family.binomial.R | 182 +-
R/family.bivariate.R | 661 +++---
R/family.categorical.R | 134 +-
R/family.censored.R | 143 +-
R/family.circular.R | 10 +-
R/family.exp.R | 22 +-
R/family.extremes.R | 528 +++--
R/family.functions.R | 32 +-
R/family.genetic.R | 457 ++--
R/family.glmgam.R | 116 +-
R/family.loglin.R | 8 +-
R/family.math.R | 33 +-
R/family.mixture.R | 19 +-
R/family.nonlinear.R | 4 +-
R/family.normal.R | 274 +--
R/family.others.R | 374 ++--
R/family.positive.R | 44 +-
R/family.qreg.R | 709 +++---
R/family.quantal.R | 8 +-
R/family.rcim.R | 75 +-
R/family.rcqo.R | 110 +-
R/family.robust.R | 32 +-
R/family.rrr.R | 289 +--
R/family.sur.R | 18 +-
R/family.survival.R | 76 +-
R/family.ts.R | 2 +-
R/family.univariate.R | 2166 ++++++++++++------
R/family.zeroinf.R | 181 +-
R/fittedvlm.R | 16 +-
R/links.q | 27 +-
R/logLik.vlm.q | 19 +-
R/model.matrix.vglm.q | 74 +-
R/nobs.R | 8 +-
R/plot.vglm.q | 77 +-
R/predict.vglm.q | 82 +-
R/qrrvglm.control.q | 2 +-
R/qtplot.q | 35 +-
R/rrvglm.control.q | 10 +-
R/rrvglm.fit.q | 2 +-
R/smart.R | 628 +++---
R/summary.vglm.q | 65 +-
R/summary.vlm.q | 20 +-
R/vgam.control.q | 4 +-
R/vglm.control.q | 20 +-
R/vglm.fit.q | 3 +-
R/vsmooth.spline.q | 2 +-
build/vignette.rds | Bin 0 -> 381 bytes
data/Huggins89.t1.rda | Bin 443 -> 443 bytes
data/Huggins89table1.rda | Bin 444 -> 445 bytes
data/alclevels.rda | Bin 549 -> 550 bytes
data/alcoff.rda | Bin 546 -> 547 bytes
data/auuc.rda | Bin 245 -> 246 bytes
data/backPain.rda | Bin 474 -> 488 bytes
data/beggs.rda | Bin 196 -> 198 bytes
data/car.all.rda | Bin 6969 -> 6972 bytes
data/cfibrosis.rda | Bin 264 -> 265 bytes
data/corbet.rda | Bin 237 -> 244 bytes
data/crashbc.rda | Bin 374 -> 374 bytes
data/crashf.rda | Bin 340 -> 340 bytes
data/crashi.rda | Bin 490 -> 491 bytes
data/crashmc.rda | Bin 339 -> 385 bytes
data/crashp.rda | Bin 375 -> 376 bytes
data/crashtr.rda | Bin 361 -> 361 bytes
data/deermice.rda | Bin 395 -> 394 bytes
data/finney44.rda | Bin 209 -> 210 bytes
data/flourbeetle.rda | Bin 0 -> 344 bytes
data/hspider.rda | Bin 1344 -> 1345 bytes
data/lakeO.rda | Bin 335 -> 336 bytes
data/leukemia.rda | Bin 329 -> 329 bytes
data/marital.nz.rda | Bin 10440 -> 10452 bytes
data/melbmaxtemp.rda | Bin 0 -> 4265 bytes
data/mmt.rda | Bin 4238 -> 0 bytes
data/pneumo.rda | Bin 267 -> 267 bytes
data/prinia.rda | Bin 1230 -> 1229 bytes
data/ruge.rda | Bin 257 -> 258 bytes
data/toxop.rda | Bin 473 -> 474 bytes
data/venice.rda | Bin 978 -> 976 bytes
data/venice90.rda | Bin 8004 -> 8000 bytes
data/wine.rda | Bin 269 -> 270 bytes
debian/changelog | 6 +
debian/control | 2 +-
inst/doc/categoricalVGAM.R | 278 +++
inst/doc/categoricalVGAM.Rnw | 2325 ++++++++++++++++++++
inst/doc/categoricalVGAM.pdf | Bin 0 -> 735446 bytes
man/{G1G2G3.Rd => A1A2A3.Rd} | 50 +-
man/AA.Aa.aa.Rd | 69 +-
man/AB.Ab.aB.ab.Rd | 9 +-
man/AB.Ab.aB.ab2.Rd | 76 -
man/ABO.Rd | 7 +-
man/AICvlm.Rd | 4 +-
man/Coef.Rd | 4 +-
man/Coef.qrrvglm-class.Rd | 4 +-
man/Coef.qrrvglm.Rd | 19 +-
man/CommonVGAMffArguments.Rd | 29 +-
man/Links.Rd | 6 +-
man/MNSs.Rd | 6 +-
man/Max.Rd | 8 +-
man/Opt.Rd | 10 +-
man/{Pareto.Rd => ParetoUC.Rd} | 26 +-
man/QvarUC.Rd | 41 +-
man/{SUR.Rd => SURff.Rd} | 17 +-
man/Select.Rd | 12 +-
man/SurvS4.Rd | 4 +-
man/VGAM-package.Rd | 2 +-
man/alaplace3.Rd | 170 +-
man/amlnormal.Rd | 24 +-
man/benini.Rd | 34 +-
man/beniniUC.Rd | 20 +-
man/betaII.Rd | 4 +-
man/{beta.ab.Rd => betaR.Rd} | 18 +-
man/betabinomUC.Rd | 4 +-
man/betabinomial.Rd | 21 +-
man/{betabinomial.ab.Rd => betabinomialff.Rd} | 19 +-
man/betaff.Rd | 6 +-
man/betageometric.Rd | 4 +-
man/{amh.Rd => biamhcop.Rd} | 25 +-
man/{amhUC.Rd => biamhcopUC.Rd} | 36 +-
man/biclaytoncop.Rd | 15 +-
man/biclaytoncopUC.Rd | 14 +-
man/{fgm.Rd => bifgmcop.Rd} | 14 +-
man/{fgmUC.Rd => bifgmcopUC.Rd} | 36 +-
man/{morgenstern.Rd => bifgmexp.Rd} | 23 +-
man/bifrankcop.Rd | 4 +-
man/bifrankcopUC.Rd | 20 +-
man/{bivgamma.mckay.Rd => bigamma.mckay.Rd} | 4 +-
man/{bigumbelI.Rd => bigumbelIexp.Rd} | 29 +-
man/{bilogis4UC.Rd => bilogisUC.Rd} | 48 +-
man/{bilogistic4.Rd => bilogistic.Rd} | 16 +-
man/binom2.or.Rd | 7 +-
man/binomialff.Rd | 16 +-
man/binormal.Rd | 4 +-
man/binormalUC.Rd | 4 +-
man/{plackett.Rd => biplackettcop.Rd} | 17 +-
man/{plackUC.Rd => biplackettcopUC.Rd} | 36 +-
man/bisa.Rd | 18 +-
man/bisaUC.Rd | 14 +-
man/bistudentt.Rd | 18 +-
man/borel.tanner.Rd | 6 +-
man/bortUC.Rd | 2 +-
man/calibrate.qrrvglm.control.Rd | 2 +-
man/cao.Rd | 4 +-
man/cao.control.Rd | 2 +-
man/cardioid.Rd | 2 +-
man/cauchit.Rd | 6 +
man/cauchy.Rd | 10 +-
man/{cgumbel.Rd => cens.gumbel.Rd} | 12 +-
man/{cennormal.Rd => cens.normal.Rd} | 17 +-
man/{cenpoisson.Rd => cens.poisson.Rd} | 16 +-
man/concoef-methods.Rd | 14 +-
man/concoef.Rd | 11 +-
man/cqo.Rd | 26 +-
man/dagum.Rd | 4 +-
man/dirichlet.Rd | 7 +
man/dirmul.old.Rd | 2 +-
man/dirmultinomial.Rd | 11 +-
man/{double.cennormal.Rd => double.cens.normal.Rd} | 14 +-
man/double.expbinomial.Rd | 12 +-
man/eexpUC.Rd | 14 +-
man/enormUC.Rd | 14 +-
man/erf.Rd | 15 +-
man/erlang.Rd | 9 +-
man/eunifUC.Rd | 16 +-
man/{expexp.Rd => expexpff.Rd} | 62 +-
man/{expexp1.Rd => expexpff1.Rd} | 44 +-
man/expgeometric.Rd | 4 +-
man/explogff.Rd | 6 +-
man/exponential.Rd | 31 +-
man/exppoisson.Rd | 35 +-
man/exppoissonUC.Rd | 31 +-
man/fisk.Rd | 4 +-
man/fittedvlm.Rd | 15 +-
man/flourbeetle.Rd | 63 +
man/foldnormal.Rd | 3 +-
man/frechet.Rd | 14 +-
man/frechetUC.Rd | 4 +-
man/gamma1.Rd | 6 +-
man/gamma2.Rd | 41 +-
man/{gamma2.ab.Rd => gammaR.Rd} | 77 +-
man/{gammahyp.Rd => gammahyperbola.Rd} | 15 +-
man/gaussianff.Rd | 2 +-
man/genbetaII.Rd | 4 +-
man/gengamma.Rd | 37 +-
man/gengammaUC.Rd | 38 +-
man/genpoisson.Rd | 4 +-
man/genrayleigh.Rd | 31 +-
man/genrayleighUC.Rd | 24 +-
man/get.smart.Rd | 12 +-
man/gev.Rd | 34 +-
man/gew.Rd | 5 +-
man/gompertz.Rd | 13 +-
man/gompertzUC.Rd | 27 +-
man/gpd.Rd | 61 +-
man/gpdUC.Rd | 3 +-
man/grc.Rd | 12 +-
man/gumbel.Rd | 2 +-
man/gumbelII.Rd | 52 +-
man/gumbelIIUC.Rd | 24 +-
man/hormone.Rd | 8 +-
man/huberUC.Rd | 4 +-
man/hypersecant.Rd | 20 +-
man/{invbinomial.Rd => inv.binomial.Rd} | 14 +-
man/inv.gaussianff.Rd | 4 +-
man/{invlomax.Rd => inv.lomax.Rd} | 24 +-
man/{invlomaxUC.Rd => inv.lomaxUC.Rd} | 36 +-
man/{invparalogistic.Rd => inv.paralogistic.Rd} | 18 +-
...{invparalogisticUC.Rd => inv.paralogisticUC.Rd} | 36 +-
man/is.parallel.Rd | 4 +-
man/is.smart.Rd | 18 +-
man/levy.Rd | 98 +-
man/lgammaUC.Rd | 30 +-
man/lgammaff.Rd | 34 +-
man/lindley.Rd | 2 +-
man/lino.Rd | 21 +-
man/lms.bcg.Rd | 4 +-
man/lms.bcn.Rd | 24 +-
man/lms.yjn.Rd | 6 +-
man/logF.Rd | 2 +-
man/logistic.Rd | 18 +-
man/logit.Rd | 2 +-
man/loglaplace.Rd | 14 +-
man/lognormal.Rd | 110 +-
man/lomax.Rd | 4 +-
man/lqnorm.Rd | 4 +-
man/lvplot.qrrvglm.Rd | 47 +-
man/makeham.Rd | 12 +-
man/makehamUC.Rd | 24 +-
man/matched.binomial.Rd | 180 --
man/maxwell.Rd | 5 +-
man/maxwellUC.Rd | 30 +-
man/{mmt.Rd => melbmaxtemp.Rd} | 14 +-
man/mix2exp.Rd | 8 +-
man/mix2poisson.Rd | 18 +-
man/{mlogit.Rd => multilogit.Rd} | 32 +-
man/multinomial.Rd | 2 +-
man/nakagami.Rd | 26 +-
man/nakagamiUC.Rd | 14 +-
man/negbinomial.Rd | 39 +-
man/negbinomial.size.Rd | 4 +-
man/normal.vcm.Rd | 26 +-
man/notdocumentedyet.Rd | 98 +-
man/paralogistic.Rd | 4 +-
man/paretoIV.Rd | 48 +-
man/paretoff.Rd | 27 +-
man/perks.Rd | 21 +-
man/perksUC.Rd | 8 +-
man/persp.qrrvglm.Rd | 14 +-
man/plotrcim0.Rd | 16 +-
man/plotvgam.Rd | 1 +
man/poissonff.Rd | 4 +-
man/posbernoulli.t.Rd | 14 +
man/posbernoulli.tb.Rd | 15 +-
man/posnegbinomial.Rd | 4 +-
man/powerlink.Rd | 4 +-
man/prats.Rd | 2 +-
man/predictqrrvglm.Rd | 6 +-
man/predictvglm.Rd | 6 +
man/prentice74.Rd | 10 +-
man/put.smart.Rd | 12 +-
man/qrrvglm.control.Rd | 6 +-
man/quasipoissonff.Rd | 2 +-
man/qvar.Rd | 10 +-
man/rayleigh.Rd | 20 +-
man/rcqo.Rd | 62 +-
man/{recexp1.Rd => rec.exp1.Rd} | 12 +-
man/{recnormal.Rd => rec.normal.Rd} | 14 +-
man/riceUC.Rd | 70 +-
man/riceff.Rd | 11 +-
man/rlplot.egev.Rd | 9 +-
man/rrvglm.Rd | 19 +-
man/rrvglm.control.Rd | 16 +-
man/rrvglm.optim.control.Rd | 25 +-
man/{koenker.Rd => sc.studentt2.Rd} | 38 +-
man/{koenkerUC.Rd => sc.t2UC.Rd} | 67 +-
man/simplex.Rd | 4 +-
man/simulate.vlm.Rd | 94 +-
man/sinmad.Rd | 4 +-
man/skewnormal.Rd | 3 +
man/smart.expression.Rd | 11 +-
man/smart.mode.is.Rd | 15 +-
man/studentt.Rd | 13 +-
man/tikuv.Rd | 3 +-
man/tobit.Rd | 6 +-
man/truncweibull.Rd | 14 +-
man/undocumented-methods.Rd | 84 +-
man/uninormal.Rd | 6 +-
man/vgam.control.Rd | 8 +-
man/vglm.control.Rd | 23 +-
man/vonmises.Rd | 2 +-
man/{weibull.Rd => weibullR.Rd} | 22 +-
man/weightsvglm.Rd | 6 +-
man/zanegbinomial.Rd | 6 +-
man/zinegbinomial.Rd | 10 +-
man/zipoisson.Rd | 10 +-
vignettes/categoricalVGAM.Rnw | 2325 ++++++++++++++++++++
vignettes/categoricalVGAMbib.bib | 653 ++++++
309 files changed, 13761 insertions(+), 6188 deletions(-)
diff --cc debian/changelog
index a09ba73,0000000..1444a46
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,141 -1,0 +1,147 @@@
++r-cran-vgam (0.9-5-1) unstable; urgency=medium
++
++ * New upstream release.
++
++ -- Chris Lawrence <lawrencc at debian.org> Thu, 13 Nov 2014 10:05:58 -0500
++
+r-cran-vgam (0.9-4-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 28 May 2014 18:37:59 -0400
+
+r-cran-vgam (0.9-3-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 25 Feb 2014 20:46:50 -0500
+
+r-cran-vgam (0.9-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 27 Apr 2013 21:40:01 -0400
+
+r-cran-vgam (0.9-0-1) unstable; urgency=low
+
+ * New upstream release.
+ * Rebuild for R 3.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 31 Mar 2013 21:00:19 -0400
+
+r-cran-vgam (0.8-7-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 13 May 2012 22:32:15 -0400
+
+r-cran-vgam (0.8-6-1) unstable; urgency=low
+
+ * New upstream release; fixes FTBFS. (Closes: #665250)
+ + Upstream now requires R >= 2.14; build dependencies updated accordingly.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 22 Mar 2012 13:44:59 -0400
+
+r-cran-vgam (0.8-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 04 Nov 2011 13:13:06 -0400
+
+r-cran-vgam (0.8-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 17 Jul 2011 16:20:26 -0500
+
+r-cran-vgam (0.8-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 20 Feb 2011 15:37:31 -0600
+
+r-cran-vgam (0.8-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 07 Jul 2010 03:44:27 -0500
+
+r-cran-vgam (0.7-10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 30 Mar 2010 21:21:11 -0500
+
+r-cran-vgam (0.7-9-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update debian/watch.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 10 Jul 2009 21:27:58 -0500
+
+r-cran-vgam (0.7-8-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 16 Mar 2009 22:22:19 -0500
+
+r-cran-vgam (0.7-7-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 29 May 2008 06:51:02 -0500
+
+r-cran-vgam (0.7-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Mar 2008 02:04:58 -0500
+
+r-cran-vgam (0.7-5-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 06 Dec 2007 19:19:56 -0600
+
+r-cran-vgam (0.7-4-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 07 Oct 2007 20:16:15 -0500
+
+r-cran-vgam (0.7-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 14 Jun 2007 14:04:29 -0500
+
+r-cran-vgam (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 4 Feb 2007 15:28:54 -0600
+
+r-cran-vgam (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * First upload to unstable, since VGAM is now GPL'd (yeay!).
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 26 Oct 2006 22:05:10 -0500
+
+r-other-yee-vgam (0.6-9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Jun 2006 20:39:52 -0400
+
+r-other-yee-vgam (0.6-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Jul 2005 02:42:23 -0500
+
+r-other-yee-vgam (0.5-19-1) unstable; urgency=low
+
+ * Initial Debian Release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 19 Apr 2004 19:12:44 -0500
diff --cc debian/control
index 940af10,0000000..ea2e681
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,24 -1,0 +1,24 @@@
+Source: r-cran-vgam
+Section: gnu-r
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
+Build-Depends: debhelper (>> 9), r-base-dev (>= 3.0), cdbs, dpkg-dev (>= 1.16.1~)
- Standards-Version: 3.9.5
++Standards-Version: 3.9.6
+Homepage: http://www.stat.auckland.ac.nz/~yee/VGAM/
+
+Package: r-cran-vgam
+Architecture: any
+Depends: ${R:Depends}, ${shlibs:Depends}, ${misc:Depends}
+Enhances: r-cran-zelig
+Description: GNU R package for estimating vector generalized additive models
+ This package implements a variety of functions for estimating vector
+ generalized additive models (VGAMs), as well as vector generalized
+ linear models (VGLMs), reduced-rank VGLMs, and quadratic reduced-rank
+ VGLMs.
+ .
+ Specific models that can be fit include a wide variety of
+ categorical-response models (with nominal and ordinal dependent
+ variables), bivariate binary-response models (bivariate
+ logit/probit), and seemingly-unrelated regressions. The package also
+ includes a number of standard and non-standard distribution functions
+ of use to statisticians.
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-vgam.git
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