[r-cran-vgam] 55/63: Merge tag 'upstream/1.0-3'
Andreas Tille
tille at debian.org
Tue Jan 24 13:54:42 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-vgam.
commit c51d9df3fc47a46e1351ea7a342d7b20e700f526
Merge: 8fddf75 ef164e4
Author: Andreas Tille <tille at debian.org>
Date: Tue Jan 24 14:29:38 2017 +0100
Merge tag 'upstream/1.0-3'
Upstream version 1.0-3
BUGS | 8 +
DESCRIPTION | 8 +-
MD5 | 1069 +++---
NAMESPACE | 130 +-
NEWS | 53 +
R/Links.R | 4 +-
R/aamethods.q | 67 +-
R/attrassign.R | 4 +-
R/bAIC.q | 14 +-
R/build.terms.vlm.q | 20 +-
R/calibrate.q | 36 +-
R/cao.R | 24 +-
R/cao.fit.q | 150 +-
R/coef.vlm.q | 16 +-
R/confint.vlm.R | 88 +-
R/cqo.R | 24 +-
R/cqo.fit.q | 85 +-
R/deviance.vlm.q | 27 +-
R/effects.vglm.q | 2 +-
R/family.actuary.R | 781 +++--
R/family.aunivariate.R | 3168 ++++++++++++++---
R/family.basics.R | 208 +-
R/family.binomial.R | 443 ++-
R/family.bivariate.R | 444 ++-
R/family.categorical.R | 244 +-
R/family.censored.R | 88 +-
R/family.circular.R | 32 +-
R/family.exp.R | 78 +-
R/family.extremes.R | 216 +-
R/family.functions.R | 144 +-
R/family.genetic.R | 85 +-
R/family.glmgam.R | 305 +-
R/family.loglin.R | 65 +-
R/family.math.R | 143 +-
R/family.mixture.R | 89 +-
R/family.nbd.R | 1868 ++++++++++
R/family.nonlinear.R | 27 +-
R/family.normal.R | 326 +-
R/family.oneinf.R | 2188 ++++++++++++
R/family.others.R | 424 ++-
R/family.positive.R | 558 +--
R/family.qreg.R | 522 +--
R/family.rcim.R | 53 +-
R/family.rcqo.R | 4 +-
R/family.robust.R | 32 +-
R/family.rrr.R | 331 +-
R/family.sur.R | 19 +-
R/family.survival.R | 40 +-
R/family.ts.R | 354 +-
R/family.univariate.R | 6636 ++++++++++++------------------------
R/family.vglm.R | 6 +-
R/family.zeroinf.R | 775 ++---
R/fittedvlm.R | 21 +-
R/formula.vlm.q | 2 +-
R/generic.q | 2 +-
R/getxvlmaug.R | 199 ++
R/links.q | 137 +-
R/logLik.vlm.q | 8 +-
R/lrwaldtest.R | 88 +-
R/model.matrix.vglm.q | 198 +-
R/mux.q | 32 +-
R/nobs.R | 2 +-
R/penvps.R | 139 -
R/plot.vgam.R | 190 +-
R/plot.vglm.R | 4 +-
R/predict.vgam.q | 26 +-
R/predict.vglm.q | 101 +-
R/predict.vlm.q | 35 +-
R/print.vglm.q | 291 +-
R/print.vlm.q | 10 +-
R/profilevglm.R | 303 ++
R/psfun.R | 183 -
R/psv2magic.R | 63 +-
R/qrrvglm.control.q | 26 +-
R/qtplot.q | 148 +-
R/residuals.vlm.q | 54 +-
R/rrvglm.R | 32 +-
R/rrvglm.control.q | 13 +-
R/rrvglm.fit.q | 58 +-
R/s.q | 6 +-
R/s.vam.q | 16 +-
R/simulate.vglm.R | 4 +-
R/sm.os.R | 333 ++
R/sm.ps.R | 206 ++
R/smart.R | 50 +-
R/summary.vgam.q | 84 +-
R/summary.vglm.q | 45 +-
R/summary.vlm.q | 30 +-
R/vcov.pvgam.R | 526 +++
R/vgam.R | 162 +-
R/vgam.control.q | 49 +-
R/vgam.fit.q | 375 +-
R/vgam.match.q | 10 +-
R/vglm.R | 42 +-
R/vglm.control.q | 110 +-
R/vglm.fit.q | 74 +-
R/vlm.R | 26 +-
R/vlm.wfit.q | 108 +-
R/vsmooth.spline.q | 60 +-
build/vignette.rds | Bin 478 -> 480 bytes
data/Huggins89.t1.rda | Bin 442 -> 443 bytes
data/Huggins89table1.rda | Bin 444 -> 445 bytes
data/alclevels.rda | Bin 549 -> 550 bytes
data/alcoff.rda | Bin 546 -> 547 bytes
data/auuc.rda | Bin 244 -> 246 bytes
data/backPain.rda | Bin 480 -> 485 bytes
data/beggs.rda | Bin 196 -> 198 bytes
data/car.all.rda | Bin 6959 -> 6962 bytes
data/cfibrosis.rda | Bin 263 -> 264 bytes
data/corbet.rda | Bin 236 -> 245 bytes
data/crashbc.rda | Bin 374 -> 374 bytes
data/crashf.rda | Bin 340 -> 341 bytes
data/crashi.rda | Bin 489 -> 491 bytes
data/crashmc.rda | Bin 385 -> 385 bytes
data/crashp.rda | Bin 375 -> 376 bytes
data/crashtr.rda | Bin 360 -> 361 bytes
data/deermice.rda | Bin 393 -> 393 bytes
data/ducklings.rda | Bin 560 -> 561 bytes
data/finney44.rda | Bin 209 -> 210 bytes
data/flourbeetle.rda | Bin 342 -> 344 bytes
data/hspider.rda | Bin 1343 -> 1344 bytes
data/lakeO.rda | Bin 333 -> 335 bytes
data/leukemia.rda | Bin 328 -> 329 bytes
data/marital.nz.rda | Bin 10492 -> 10448 bytes
data/melbmaxtemp.rda | Bin 4257 -> 4264 bytes
data/pneumo.rda | Bin 266 -> 268 bytes
data/prinia.rda | Bin 1228 -> 1229 bytes
data/ruge.rda | Bin 254 -> 258 bytes
data/toxop.rda | Bin 472 -> 474 bytes
data/venice.rda | Bin 983 -> 986 bytes
data/venice90.rda | Bin 8036 -> 8008 bytes
data/wine.rda | Bin 270 -> 269 bytes
inst/CITATION | 4 +-
inst/doc/categoricalVGAM.R | 66 +-
inst/doc/categoricalVGAM.Rnw | 18 +-
inst/doc/categoricalVGAM.pdf | Bin 646125 -> 648348 bytes
inst/doc/crVGAM.pdf | Bin 421526 -> 421558 bytes
man/A1A2A3.Rd | 12 +-
man/AA.Aa.aa.Rd | 10 +-
man/AB.Ab.aB.ab.Rd | 8 +-
man/ABO.Rd | 10 +-
man/AICvlm.Rd | 2 +-
man/AR1.Rd | 72 +-
man/AR1EIM.Rd | 166 +-
man/AR1UC.Rd | 2 +-
man/BICvlm.Rd | 2 +-
man/Coef.qrrvglm-class.Rd | 30 +-
man/Coef.qrrvglm.Rd | 6 +-
man/Coef.rrvglm-class.Rd | 4 +-
man/Coef.rrvglm.Rd | 10 +-
man/Coef.vlm.Rd | 4 +-
man/CommonVGAMffArguments.Rd | 31 +-
man/Huggins89.t1.Rd | 2 +-
man/Inv.gaussian.Rd | 2 +-
man/Links.Rd | 22 +-
man/MNSs.Rd | 18 +-
man/Opt.Rd | 2 +-
man/ParetoUC.Rd | 2 +-
man/QvarUC.Rd | 2 +-
man/Rcim.Rd | 14 +-
man/SURff.Rd | 2 +-
man/Select.Rd | 34 +-
man/SurvS4-class.Rd | 2 +-
man/Tol.Rd | 2 +-
man/UtilitiesVGAM.Rd | 2 +-
man/V1.Rd | 6 +-
man/VGAM-package.Rd | 42 +-
man/acat.Rd | 4 +-
man/alaplace3.Rd | 22 +-
man/amlbinomial.Rd | 4 +-
man/amlexponential.Rd | 2 +-
man/amlnormal.Rd | 2 +-
man/amlpoisson.Rd | 2 +-
man/auxposbernoulli.t.Rd | 12 +-
man/backPain.Rd | 2 +-
man/beggs.Rd | 8 +-
man/benfUC.Rd | 4 +-
man/benini.Rd | 4 +-
man/beniniUC.Rd | 2 +-
man/betaII.Rd | 8 +-
man/betaR.Rd | 14 +-
man/betabinomUC.Rd | 71 +-
man/betabinomial.Rd | 26 +-
man/betabinomialff.Rd | 28 +-
man/betaff.Rd | 23 +-
man/betageomUC.Rd | 2 +-
man/betageometric.Rd | 20 +-
man/betanormUC.Rd | 2 +-
man/betaprime.Rd | 38 +-
man/biamhcop.Rd | 2 +-
man/biclaytoncop.Rd | 2 +-
man/biclaytoncopUC.Rd | 2 +-
man/bifgmcop.Rd | 4 +-
man/bifgmcopUC.Rd | 2 +-
man/bifgmexp.Rd | 2 +-
man/bifrankcop.Rd | 4 +-
man/bigumbelIexp.Rd | 2 +-
man/bilogistic.Rd | 12 +-
man/binom2.or.Rd | 8 +-
man/binom2.rho.Rd | 6 +-
man/binom2.rhoUC.Rd | 6 +-
man/binomialff.Rd | 12 +-
man/binormal.Rd | 15 +-
man/binormalUC.Rd | 6 +-
man/binormalcop.Rd | 4 +-
man/binormcopUC.Rd | 2 +-
man/bisa.Rd | 10 +-
man/bisaUC.Rd | 2 +-
man/bistudentt.Rd | 2 +-
man/bistudenttUC.Rd | 2 +-
man/bmi.nz.Rd | 8 +-
man/borel.tanner.Rd | 4 +-
man/brat.Rd | 10 +-
man/bratUC.Rd | 6 +-
man/bratt.Rd | 18 +-
man/calibrate-methods.Rd | 2 +-
man/calibrate.Rd | 4 +-
man/calibrate.qrrvglm.Rd | 4 +-
man/calibrate.qrrvglm.control.Rd | 12 +-
man/cao.Rd | 42 +-
man/cao.control.Rd | 54 +-
man/cardUC.Rd | 4 +-
man/cardioid.Rd | 8 +-
man/cauchit.Rd | 2 +-
man/cauchy.Rd | 12 +-
man/cdf.lmscreg.Rd | 16 +-
man/cens.gumbel.Rd | 4 +-
man/cens.normal.Rd | 4 +-
man/cfibrosis.Rd | 2 +-
man/cgo.Rd | 10 +-
man/chest.nz.Rd | 4 +-
man/chisq.Rd | 2 +-
man/clo.Rd | 4 +-
man/cloglog.Rd | 12 +-
man/coefvgam.Rd | 2 +-
man/coefvlm.Rd | 2 +-
man/confintvglm.Rd | 118 +-
man/constraints.Rd | 2 +-
man/corbet.Rd | 2 +-
man/cqo.Rd | 38 +-
man/crashes.Rd | 12 +-
man/cratio.Rd | 2 +-
man/cumulative.Rd | 18 +-
man/dagum.Rd | 12 +-
man/deplot.lmscreg.Rd | 4 +-
man/depvar.Rd | 2 +-
man/df.residual.Rd | 4 +-
man/diffzeta.Rd | 85 +
man/diffzetaUC.Rd | 98 +
man/dirichlet.Rd | 4 +-
man/dirmul.old.Rd | 8 +-
man/dirmultinomial.Rd | 31 +-
man/double.cens.normal.Rd | 2 +-
man/double.expbinomial.Rd | 8 +-
man/eexpUC.Rd | 4 +-
man/enormUC.Rd | 4 +-
man/enzyme.Rd | 2 +-
man/erlang.Rd | 8 +-
man/eunifUC.Rd | 4 +-
man/expexpff.Rd | 2 +-
man/expexpff1.Rd | 2 +-
man/expint3.Rd | 12 +-
man/explink.Rd | 2 +-
man/exponential.Rd | 4 +-
man/felix.Rd | 11 +-
man/felixUC.Rd | 18 +-
man/fff.Rd | 8 +-
man/fill.Rd | 16 +-
man/fisherz.Rd | 6 +-
man/fisk.Rd | 14 +-
man/fittedvlm.Rd | 16 +-
man/flourbeetle.Rd | 6 +-
man/foldnormUC.Rd | 2 +-
man/foldnormal.Rd | 4 +-
man/foldsqrt.Rd | 2 +-
man/frechet.Rd | 6 +-
man/freund61.Rd | 20 +-
man/gamma1.Rd | 6 +-
man/gamma2.Rd | 4 +-
man/gammaR.Rd | 6 +-
man/gammahyperbola.Rd | 2 +-
man/garma.Rd | 4 +-
man/gaussianff.Rd | 2 +-
man/genbetaII.Rd | 6 +-
man/gengamma.Rd | 6 +-
man/genpoisUC.Rd | 2 +-
man/genpoisson.Rd | 6 +-
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man/gev.Rd | 20 +-
man/gevUC.Rd | 2 +-
man/gew.Rd | 2 +-
man/golf.Rd | 8 +-
man/gompertz.Rd | 4 +-
man/gpd.Rd | 4 +-
man/gpdUC.Rd | 2 +-
man/grain.us.Rd | 2 +-
man/grc.Rd | 26 +-
man/gumbel.Rd | 44 +-
man/gumbelII.Rd | 12 +-
man/gumbelUC.Rd | 2 +-
man/guplot.Rd | 10 +-
man/has.intercept.Rd | 2 +-
man/hormone.Rd | 4 +-
man/hspider.Rd | 4 +-
man/huber.Rd | 8 +-
man/huberUC.Rd | 4 +-
man/hunua.Rd | 10 +-
man/hyperg.Rd | 10 +-
man/hypersecant.Rd | 8 +-
man/hzeta.Rd | 44 +-
man/hzetaUC.Rd | 49 +-
man/iam.Rd | 28 +-
man/identitylink.Rd | 8 +-
man/inv.binomial.Rd | 4 +-
man/inv.gaussianff.Rd | 8 +-
man/inv.lomax.Rd | 4 +-
man/inv.paralogistic.Rd | 12 +-
man/is.buggy.Rd | 17 +-
man/kendall.tau.Rd | 8 +-
man/kumar.Rd | 16 +-
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man/lakeO.Rd | 2 +-
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man/latvar.Rd | 2 +-
man/leipnik.Rd | 33 +-
man/lerch.Rd | 6 +-
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man/lgammaff.Rd | 10 +-
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man/lindley.Rd | 6 +-
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man/lqnorm.Rd | 4 +-
man/lrtest.Rd | 12 +-
man/lvplot.qrrvglm.Rd | 74 +-
man/lvplot.rrvglm.Rd | 34 +-
man/machinists.Rd | 4 +-
man/makeham.Rd | 18 +-
man/makehamUC.Rd | 2 +-
man/margeff.Rd | 2 +-
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man/mccullagh89.Rd | 4 +-
man/micmen.Rd | 2 +-
man/mix2exp.Rd | 2 +-
man/mix2normal.Rd | 12 +-
man/mix2poisson.Rd | 2 +-
man/model.matrixvlm.Rd | 10 +-
man/moffset.Rd | 10 +-
man/multilogit.Rd | 2 +-
man/multinomial.Rd | 20 +-
man/nakagami.Rd | 18 +-
man/nakagamiUC.Rd | 2 +-
man/nbcanlink.Rd | 2 +-
man/nbolf.Rd | 6 +-
man/negbinomial.Rd | 68 +-
man/negbinomial.size.Rd | 2 +-
man/normal.vcm.Rd | 2 +-
man/notdocumentedyet.Rd | 42 +-
man/oalog.Rd | 138 +
man/oalogUC.Rd | 77 +
man/oapospoisUC.Rd | 77 +
man/oapospoisson.Rd | 131 +
man/oazeta.Rd | 132 +
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man/oilog.Rd | 93 +
man/oilogUC.Rd | 126 +
man/oiposbinomUC.Rd | 16 +-
man/oiposbinomial.Rd | 207 ++
man/oipospoisUC.Rd | 10 +-
man/oipospoisson.Rd | 8 +-
man/{oipospoisson.Rd => oizeta.Rd} | 59 +-
man/oizetaUC.Rd | 122 +
man/{oipospoisson.Rd => oizipf.Rd} | 62 +-
man/oizipfUC.Rd | 122 +
man/ordpoisson.Rd | 6 +-
man/otlog.Rd | 65 +
man/otlogUC.Rd | 105 +
man/otpospoisUC.Rd | 87 +
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man/otzeta.Rd | 73 +
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man/paretoff.Rd | 8 +-
man/perks.Rd | 17 +-
man/perksUC.Rd | 4 +-
man/persp.qrrvglm.Rd | 16 +-
man/pgamma.deriv.Rd | 10 +-
man/pgamma.deriv.unscaled.Rd | 2 +-
man/plotdeplot.lmscreg.Rd | 12 +-
man/plotqrrvglm.Rd | 14 +-
man/plotqtplot.lmscreg.Rd | 16 +-
man/plotrcim0.Rd | 28 +-
man/plotvgam.Rd | 20 +-
man/plotvgam.control.Rd | 18 +-
man/plotvglm.Rd | 14 +-
man/pneumo.Rd | 4 +-
man/poisson.points.Rd | 2 +-
man/poissonff.Rd | 10 +-
man/polf.Rd | 8 +-
man/polonoUC.Rd | 8 +-
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man/powerlink.Rd | 2 +-
man/prats.Rd | 6 +-
man/predictqrrvglm.Rd | 4 +-
man/predictvglm.Rd | 43 +-
man/prentice74.Rd | 6 +-
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man/propodds.Rd | 2 +-
man/ps.Rd | 267 --
man/qrrvglm.control.Rd | 54 +-
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man/skellam.Rd | 6 +-
man/skewnormUC.Rd | 8 +-
man/skewnormal.Rd | 2 +-
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man/sm.os.Rd | 472 +++
man/sm.ps.Rd | 269 ++
man/smartpred.Rd | 2 +
man/sratio.Rd | 4 +-
man/studentt.Rd | 6 +-
man/summarypvgam.Rd | 108 +
man/summaryvgam.Rd | 86 +
man/summaryvglm.Rd | 24 +-
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man/venice.Rd | 14 +-
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man/vgam.Rd | 242 +-
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man/vglmff-class.Rd | 24 +-
man/vonmises.Rd | 10 +-
man/vsmooth.spline.Rd | 43 +-
man/waitakere.Rd | 8 +-
man/waldff.Rd | 25 +-
man/weibull.mean.Rd | 4 +-
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man/weightsvglm.Rd | 4 +-
man/wine.Rd | 8 +-
man/yeo.johnson.Rd | 8 +-
man/yip88.Rd | 20 +-
man/yulesimon.Rd | 24 +-
man/yulesimonUC.Rd | 45 +-
man/zabinomUC.Rd | 6 +-
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man/zanegbinUC.Rd | 8 +-
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man/zetaff.Rd | 26 +-
man/zibinomUC.Rd | 8 +-
man/zibinomial.Rd | 16 +-
man/zigeomUC.Rd | 10 +-
man/zigeometric.Rd | 8 +-
man/zinegbinUC.Rd | 10 +-
man/zinegbinomial.Rd | 30 +-
man/zipebcom.Rd | 10 +-
man/zipf.Rd | 30 +-
man/zipfUC.Rd | 52 +-
man/zipoisUC.Rd | 8 +-
man/zipoisson.Rd | 8 +-
man/zoabetaR.Rd | 10 +-
man/zoabetaUC.Rd | 18 +-
src/fgam.f | 84 +-
src/tyeepolygamma3.c | 4 +-
src/vdigami.f | 10 +-
src/veigen.f | 55 +-
src/vlinpack2.f | 5 +-
src/vlinpack3.f | 5 +-
vignettes/categoricalVGAM.Rnw | 18 +-
vignettes/categoricalVGAMbib.bib | 49 +-
554 files changed, 23255 insertions(+), 12637 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-vgam.git
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