[liggghts] branch master updated (c7bff95 -> 93ee0c7)
Anton Gladky
gladk at moszumanska.debian.org
Mon Jul 17 22:20:49 UTC 2017
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository liggghts.
from c7bff95 Update changelog.
new 56c1d27 Drop windows-files from the source.
new a769922 Filter some js-files from the source.
adds e042cd2 New upstream version 3.7.0+repack1
new ea5da76 Merge
new d14defe Refresh patches, remove uneeded ones.
new 8812f5f Set maximal hardening level.
new 93ee0c7 Update changelog.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/changelog | 10 +
debian/copyright | 3 +
debian/patches/01_add_cmake_files.patch | 131 +-
debian/patches/05_vtk6_support.patch | 25 -
.../b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch | 16 -
debian/patches/series | 2 -
debian/rules | 1 +
doc/Eqs/cna_cutoff1.tex | 28 +-
doc/Eqs/cna_cutoff2.tex | 24 +-
doc/Eqs/eff_ECP1.tex | 16 +-
doc/Eqs/fix_wall_lj1043.tex | 22 +-
doc/Eqs/heat_flux_k.tex | 22 +-
doc/Eqs/pair_comb1.tex | 14 +-
doc/Eqs/pair_comb2.tex | 44 +-
doc/Eqs/pair_lubricate_GRM.jpg | Bin 0 -> 83152 bytes
doc/Eqs/pair_lubricate_GRM.tex | 17 +
doc/JPG/screenshot_atomeye.jpg | Bin 426608 -> 0 bytes
doc/JPG/screenshot_atomeye_small.jpg | Bin 7498 -> 0 bytes
doc/JPG/screenshot_gl.jpg | Bin 306252 -> 0 bytes
doc/JPG/screenshot_gl_small.jpg | Bin 5875 -> 0 bytes
doc/JPG/screenshot_pymol.jpg | Bin 417093 -> 0 bytes
doc/JPG/screenshot_pymol_small.jpg | Bin 7660 -> 0 bytes
doc/JPG/screenshot_vmd.jpg | Bin 327211 -> 0 bytes
doc/JPG/screenshot_vmd_small.jpg | Bin 6787 -> 0 bytes
doc/Makefile | 161 +-
doc/Manual.html | 407 +-
doc/Manual.pdf | Bin 3368441 -> 0 bytes
doc/Manual.txt | 69 +-
doc/Section_commands.html | 699 +-
doc/Section_commands.txt | 11 +-
doc/Section_commands_LAMMPS.html | 226 +-
doc/Section_errors.html | 13235 ++++-------
doc/Section_errors.txt | 12 +-
doc/Section_gran_models.html | 380 +-
doc/Section_gran_models.txt | 2 +-
doc/Section_gran_models_prev.html | 19 -
doc/Section_gran_models_prev.txt | 17 -
doc/Section_howto.html | 1649 +-
doc/Section_input_script.html | 621 +-
doc/Section_input_script.txt | 6 +-
doc/Section_intro.html | 544 +-
doc/Section_intro.txt | 31 +-
doc/Section_mesh_modules.html | 251 +
doc/Section_mesh_modules.txt | 23 +
doc/Section_modify.html | 1339 +-
doc/Section_packages.html | 369 +-
doc/Section_python.html | 1177 +-
doc/Section_start.html | 2109 +-
doc/Section_start.txt | 385 +-
doc/_downloads/yi_jing_01_chien.jpg | Bin 0 -> 9498 bytes
doc/{ => _images}/LIGGGHTS_logo.png | Bin
doc/{Eqs => _images}/bond_harmonic.jpg | Bin
doc/{Eqs => _images}/box.jpg | Bin
doc/{Eqs => _images}/box_inverse.jpg | Bin
doc/{Eqs => _images}/centro_symmetry.jpg | Bin
doc/{Eqs => _images}/cna_cutoff1.jpg | Bin
doc/{Eqs => _images}/cna_cutoff2.jpg | Bin
doc/{Eqs => _images}/compute_gyration.jpg | Bin
doc/{Eqs => _images}/compute_msd_nongauss.jpg | Bin
doc/{Eqs => _images}/fix_box_relax1.jpg | Bin
doc/{Eqs => _images}/fix_box_relax2.jpg | Bin
.../fix_sph_density_continuity_eq1.jpg | Bin
.../fix_sph_density_continuity_eq2.jpg | Bin
doc/{Eqs => _images}/fix_sph_density_corr_eq1.jpg | Bin
doc/{Eqs => _images}/fix_sph_density_summation.jpg | Bin
doc/{Eqs => _images}/fix_spring_rg.jpg | Bin
doc/{Eqs => _images}/fix_wall_colloid.jpg | Bin
doc/{Eqs => _images}/fix_wall_harmonic.jpg | Bin
doc/{Eqs => _images}/fix_wall_lj93.jpg | Bin
doc/{Eqs => _images}/fix_wall_region_sph.jpg | Bin
doc/{Eqs => _images}/heat_gran.png | Bin
doc/{Eqs => _images}/pair_gran_hooke_eqEpsd1.gif | Bin
doc/{Eqs => _images}/pair_gran_hooke_eqEpsd2.gif | Bin
doc/{Eqs => _images}/pair_gran_hooke_eqEpsd3.gif | Bin
doc/{Eqs => _images}/pair_gran_hooke_eqEpsd4.gif | Bin
doc/{Eqs => _images}/pair_gran_hooke_eqEpsd5.gif | Bin
doc/{Eqs => _images}/pair_gran_html_147eaf38.png | Bin
doc/{Eqs => _images}/pair_gran_html_60b8ced2.png | Bin
doc/{Eqs => _images}/pair_gran_html_m225ba7de.png | Bin
doc/{Eqs => _images}/pair_gran_html_m566a9984.png | Bin
doc/{Eqs => _images}/pair_gran_html_m5aad056c.png | Bin
doc/{Eqs => _images}/pair_gran_html_m76cd8bd9.png | Bin
doc/{Eqs => _images}/pair_lj.jpg | Bin
doc/{Eqs => _images}/pair_soft.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq1.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq2.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq3.jpg | Bin
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.../pair_sph_artvisc_tenscorr_eq5.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq6.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq7.jpg | Bin
.../pair_sph_artvisc_tenscorr_eq8.jpg | Bin
doc/{Eqs => _images}/pressure.jpg | Bin
doc/{Eqs => _images}/pressure_tensor.jpg | Bin
doc/{Eqs => _images}/rotate.jpg | Bin
doc/_images/screen_mobile.png | Bin 0 -> 96294 bytes
doc/{Eqs => _images}/stress_tensor.jpg | Bin
doc/{Eqs => _images}/stress_tensor_granular.png | Bin
doc/{Eqs => _images}/transform.jpg | Bin
doc/{Eqs => _images}/viblin.jpg | Bin
doc/{Eqs => _images}/vibrot.jpg | Bin
doc/_images/yi_jing_01_chien.jpg | Bin 0 -> 9498 bytes
doc/_static/ajax-loader.gif | Bin 0 -> 673 bytes
doc/_static/basic.css | 540 +
doc/_static/comment-bright.png | Bin 0 -> 3500 bytes
doc/_static/comment-close.png | Bin 0 -> 3578 bytes
doc/_static/comment.png | Bin 0 -> 3445 bytes
doc/_static/css/badge_only.css | 2 +
doc/_static/css/badge_only.css.map | 7 +
doc/_static/css/theme.css | 5 +
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doc/_static/fonts/RobotoSlab-Regular.ttf | Bin 0 -> 169064 bytes
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doc/_static/fonts/fontawesome-webfont.svg | 520 +
doc/_static/fonts/fontawesome-webfont.ttf | Bin 0 -> 112160 bytes
doc/_static/fonts/fontawesome-webfont.woff | Bin 0 -> 65452 bytes
doc/_static/jquery.js | 9266 ++++++++
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doc/_static/plus.png | Bin 0 -> 199 bytes
doc/_static/pygments.css | 62 +
doc/_static/searchtools.js | 560 +
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doc/_static/up.png | Bin 0 -> 363 bytes
doc/_static/websupport.js | 808 +
doc/atom_modify.html | 361 +-
doc/atom_style.html | 465 +-
doc/atom_style.txt | 4 +-
doc/bond_coeff.html | 330 +-
doc/bond_harmonic.html | 297 +-
doc/bond_hybrid.html | 316 +-
doc/bond_none.html | 250 +-
doc/bond_style.html | 354 +-
doc/boundary.html | 334 +-
doc/box.html | 301 +-
doc/change_box.html | 640 +-
doc/change_box.txt | 8 +-
doc/clear.html | 262 +-
doc/communicate.html | 378 +-
doc/compute.html | 439 +-
doc/compute.txt | 29 +-
doc/compute_atom_molecule.html | 339 +-
doc/compute_atom_molecule.txt | 3 +-
doc/compute_bond_local.html | 322 +-
doc/compute_bond_local.txt | 3 +-
doc/compute_centro_atom.html | 363 +-
doc/compute_centro_atom.txt | 3 +-
doc/compute_cluster_atom.html | 291 +-
doc/compute_cluster_atom.txt | 3 +-
doc/compute_cna_atom.html | 349 +-
doc/compute_cna_atom.txt | 3 +-
doc/compute_com.html | 313 +-
doc/compute_com.txt | 5 +-
doc/compute_com_molecule.html | 317 +-
doc/compute_com_molecule.txt | 5 +-
doc/compute_contact_atom.html | 330 +-
doc/compute_contact_atom.txt | 32 +-
doc/compute_coord_atom.html | 380 +-
doc/compute_coord_atom.txt | 27 +-
doc/compute_coord_gran.html | 286 +-
doc/compute_coord_gran.txt | 5 +-
doc/compute_displace_atom.html | 324 +-
doc/compute_displace_atom.txt | 5 +-
doc/compute_erotate.html | 250 +
doc/compute_erotate.txt | 53 +
doc/compute_erotate_asphere.html | 310 +-
doc/compute_erotate_asphere.txt | 5 +-
doc/compute_erotate_multisphere.html | 288 +-
doc/compute_erotate_multisphere.txt | 5 +-
doc/compute_erotate_sphere.html | 317 +-
doc/compute_erotate_sphere.txt | 16 +-
doc/compute_erotate_sphere_atom.html | 308 +-
doc/compute_erotate_sphere_atom.txt | 5 +-
doc/compute_group_group.html | 314 +-
doc/compute_group_group.txt | 3 +-
doc/compute_gyration.html | 316 +-
doc/compute_gyration.txt | 5 +-
doc/compute_gyration_molecule.html | 332 +-
doc/compute_gyration_molecule.txt | 3 +-
doc/compute_inertia_molecule.html | 318 +-
doc/compute_inertia_molecule.txt | 5 +-
doc/compute_ke.html | 316 +-
doc/compute_ke.txt | 16 +-
doc/compute_ke_atom.html | 300 +-
doc/compute_ke_atom.txt | 5 +-
doc/compute_ke_multisphere.html | 289 +-
doc/compute_ke_multisphere.txt | 5 +-
doc/compute_modify.html | 314 +-
doc/compute_msd.html | 350 +-
doc/compute_msd.txt | 3 +-
doc/compute_msd_molecule.html | 343 +-
doc/compute_msd_molecule.txt | 5 +-
doc/compute_msd_nongauss.html | 321 +-
doc/compute_msd_nongauss.txt | 3 +-
doc/compute_nparticles_tracer_region.html | 363 +-
doc/compute_nparticles_tracer_region.txt | 3 +-
doc/compute_pair_gran_local.html | 418 +-
doc/compute_pair_gran_local.txt | 5 +-
doc/compute_pe.html | 324 +-
doc/compute_pe.txt | 3 +-
doc/compute_pe_atom.html | 350 +-
doc/compute_pe_atom.txt | 3 +-
doc/compute_pressure.html | 367 +-
doc/compute_pressure.txt | 3 +-
doc/compute_property_atom.html | 437 +-
doc/compute_property_atom.txt | 3 +-
doc/compute_property_local.html | 362 +-
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doc/compute_property_molecule.html | 298 +-
doc/compute_property_molecule.txt | 3 +-
doc/compute_rdf.html | 411 +-
doc/compute_rdf.txt | 3 +-
doc/compute_reduce.html | 462 +-
doc/compute_reduce.txt | 3 +-
doc/compute_rigid.html | 359 +-
doc/compute_rigid.txt | 26 +-
doc/compute_slice.html | 348 +-
doc/compute_slice.txt | 3 +-
doc/compute_stress_atom.html | 398 +-
doc/compute_stress_atom.txt | 3 +-
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doc/create_atoms.html | 478 +-
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doc/delete_atoms.txt | 4 +-
doc/delete_bonds.html | 352 +-
doc/dielectric.html | 268 +-
doc/dimension.html | 284 +-
doc/displace_atoms.html | 405 +-
doc/displace_atoms.txt | 2 +-
doc/dump.html | 985 +-
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doc/dump_custom_vtk.html | 692 +-
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doc/dump_image.html | 986 +-
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doc/dump_modify_vtk.html | 591 +-
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doc/fix_adapt.html | 517 +-
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doc/fix_ave_atom.html | 410 +-
doc/fix_ave_correlate.html | 714 +-
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doc/fix_ave_euler.txt | 14 +
doc/fix_ave_histo.html | 651 +-
doc/fix_ave_spatial.html | 725 +-
doc/fix_ave_time.html | 627 +-
doc/fix_aveforce.html | 341 +-
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doc/fix_bond_create.txt | 4 +-
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doc/fix_buoyancy.html | 337 +-
doc/fix_check_timestep_gran.html | 333 +-
doc/fix_continuum_weighted.html | 450 +-
doc/fix_couple_cfd.html | 214 +
doc/fix_couple_cfd.txt | 15 +
doc/fix_deform.html | 874 +-
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doc/fix_external.html | 433 +-
doc/fix_freeze.html | 294 +-
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doc/fix_insert_pack.html | 614 +-
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doc/fix_insert_stream.txt | 18 +-
doc/fix_lineforce.html | 288 +-
doc/fix_massflow_mesh.html | 391 +-
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doc/fix_mesh_surface_stress.html | 76 -
doc/fix_mesh_surface_stress_servo.html | 112 -
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doc/fix_momentum.html | 312 +-
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doc/fix_particledistribution_discrete.html | 332 +-
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doc/fix_particletemplate_multisphere.txt | 9 +-
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doc/fix_particletemplate_sphere.txt | 4 +-
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doc/fix_poems.txt | 6 +-
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doc/fix_spring.html | 389 +-
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doc/genindex.html | 1312 ++
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src/style_region.h | 10 -
src/style_rolling_model.h | 4 -
src/style_sph_kernel.h | 6 -
src/style_surface_model.h | 2 -
src/style_tangential_model.h | 2 -
src/superquadric_flag.h | 8 -
src/surface_mesh.h | 15 +-
src/surface_mesh_I.h | 269 +-
src/surface_model_base.h | 127 +
src/surface_model_default.h | 92 +-
src/surface_model_multicontact.h | 62 +-
src/tangential_model_base.h | 102 +
src/tangential_model_history.h | 23 +-
src/tangential_model_no_history.h | 209 +-
src/thermo.cpp | 57 +-
src/thermo.h | 4 +
src/tracking_mesh.h | 50 +-
src/tracking_mesh_I.h | 62 +-
src/tri_mesh.h | 5 +-
src/tri_mesh_planar_I.h | 32 +-
src/update.cpp | 5 +
src/update.h | 5 +
src/utils.h | 41 +-
src/variable.cpp | 38 +-
src/vector_liggghts.h | 311 +-
src/verlet.cpp | 26 +-
src/version_liggghts.h | 1 -
src/version_liggghts.txt | 2 +-
src/volume_mesh.h | 8 +-
src/volume_mesh_I.h | 8 +-
src/write_data.cpp | 1 +
src/write_restart.cpp | 2 +
1004 files changed, 132404 insertions(+), 65592 deletions(-)
delete mode 100644 debian/patches/05_vtk6_support.patch
delete mode 100644 debian/patches/b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch
create mode 100644 doc/Eqs/pair_lubricate_GRM.jpg
create mode 100644 doc/Eqs/pair_lubricate_GRM.tex
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delete mode 100644 doc/Section_gran_models_prev.txt
create mode 100644 doc/Section_mesh_modules.html
create mode 100644 doc/Section_mesh_modules.txt
create mode 100644 doc/_downloads/yi_jing_01_chien.jpg
copy doc/{ => _images}/LIGGGHTS_logo.png (100%)
copy doc/{Eqs => _images}/bond_harmonic.jpg (100%)
copy doc/{Eqs => _images}/box.jpg (100%)
copy doc/{Eqs => _images}/box_inverse.jpg (100%)
copy doc/{Eqs => _images}/centro_symmetry.jpg (100%)
copy doc/{Eqs => _images}/cna_cutoff1.jpg (100%)
copy doc/{Eqs => _images}/cna_cutoff2.jpg (100%)
copy doc/{Eqs => _images}/compute_gyration.jpg (100%)
copy doc/{Eqs => _images}/compute_msd_nongauss.jpg (100%)
copy doc/{Eqs => _images}/fix_box_relax1.jpg (100%)
copy doc/{Eqs => _images}/fix_box_relax2.jpg (100%)
copy doc/{Eqs => _images}/fix_sph_density_continuity_eq1.jpg (100%)
copy doc/{Eqs => _images}/fix_sph_density_continuity_eq2.jpg (100%)
copy doc/{Eqs => _images}/fix_sph_density_corr_eq1.jpg (100%)
copy doc/{Eqs => _images}/fix_sph_density_summation.jpg (100%)
copy doc/{Eqs => _images}/fix_spring_rg.jpg (100%)
copy doc/{Eqs => _images}/fix_wall_colloid.jpg (100%)
copy doc/{Eqs => _images}/fix_wall_harmonic.jpg (100%)
copy doc/{Eqs => _images}/fix_wall_lj93.jpg (100%)
copy doc/{Eqs => _images}/fix_wall_region_sph.jpg (100%)
copy doc/{Eqs => _images}/heat_gran.png (100%)
copy doc/{Eqs => _images}/pair_gran_hooke_eqEpsd1.gif (100%)
copy doc/{Eqs => _images}/pair_gran_hooke_eqEpsd2.gif (100%)
copy doc/{Eqs => _images}/pair_gran_hooke_eqEpsd3.gif (100%)
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copy doc/{Eqs => _images}/pair_gran_html_m566a9984.png (100%)
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copy doc/{Eqs => _images}/pair_gran_html_m76cd8bd9.png (100%)
copy doc/{Eqs => _images}/pair_lj.jpg (100%)
copy doc/{Eqs => _images}/pair_soft.jpg (100%)
copy doc/{Eqs => _images}/pair_sph_artvisc_tenscorr_eq1.jpg (100%)
copy doc/{Eqs => _images}/pair_sph_artvisc_tenscorr_eq2.jpg (100%)
copy doc/{Eqs => _images}/pair_sph_artvisc_tenscorr_eq3.jpg (100%)
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copy doc/{Eqs => _images}/pair_sph_artvisc_tenscorr_eq7.jpg (100%)
copy doc/{Eqs => _images}/pair_sph_artvisc_tenscorr_eq8.jpg (100%)
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copy doc/{Eqs => _images}/rotate.jpg (100%)
create mode 100644 doc/_images/screen_mobile.png
copy doc/{Eqs => _images}/stress_tensor.jpg (100%)
copy doc/{Eqs => _images}/stress_tensor_granular.png (100%)
copy doc/{Eqs => _images}/transform.jpg (100%)
copy doc/{Eqs => _images}/viblin.jpg (100%)
copy doc/{Eqs => _images}/vibrot.jpg (100%)
create mode 100644 doc/_images/yi_jing_01_chien.jpg
create mode 100644 doc/_static/ajax-loader.gif
create mode 100644 doc/_static/basic.css
create mode 100644 doc/_static/comment-bright.png
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create mode 100644 doc/_static/css/badge_only.css
create mode 100644 doc/_static/css/badge_only.css.map
create mode 100644 doc/_static/css/theme.css
create mode 100644 doc/_static/css/theme.css.map
create mode 100644 doc/_static/doctools.js
create mode 100644 doc/_static/down-pressed.png
create mode 100644 doc/_static/down.png
create mode 100644 doc/_static/file.png
create mode 100644 doc/_static/fonts/FontAwesome.otf
create mode 100644 doc/_static/fonts/Inconsolata-Bold.ttf
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create mode 100644 doc/_static/fonts/RobotoSlab-Bold.ttf
create mode 100644 doc/_static/fonts/RobotoSlab-Regular.ttf
create mode 100644 doc/_static/fonts/fontawesome-webfont.eot
create mode 100644 doc/_static/fonts/fontawesome-webfont.svg
create mode 100644 doc/_static/fonts/fontawesome-webfont.ttf
create mode 100644 doc/_static/fonts/fontawesome-webfont.woff
create mode 100644 doc/_static/jquery.js
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create mode 100644 doc/_static/pygments.css
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create mode 100644 doc/_static/underscore.js
create mode 100644 doc/_static/up-pressed.png
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create mode 100644 doc/_static/websupport.js
create mode 100644 doc/compute_erotate.html
create mode 100644 doc/compute_erotate.txt
create mode 100644 doc/fix_couple_cfd.html
create mode 100644 doc/fix_couple_cfd.txt
delete mode 100644 doc/fix_mesh_surface_stress.html
delete mode 100644 doc/fix_mesh_surface_stress_servo.html
create mode 100644 doc/fix_property_atom_region_tracer_time.html
rename doc/{fix_property_atom_timetracer.txt => fix_property_atom_region_tracer_time.txt} (66%)
delete mode 100644 doc/fix_property_atom_timetracer.html
mode change 100644 => 100755 doc/fix_sph_pressure.txt
create mode 100644 doc/genindex.html
delete mode 100644 doc/githubAccess_non-public.html
delete mode 100644 doc/githubAccess_non-public.txt
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delete mode 100644 doc/githubAccess_public.txt
create mode 100644 doc/mesh_module_liquidtransfer.html
create mode 100644 doc/mesh_module_liquidtransfer.txt
create mode 100644 doc/mesh_module_servo.html
rename doc/{fix_mesh_surface_stress_servo.txt => mesh_module_servo.txt} (66%)
create mode 100644 doc/mesh_module_stress.html
rename doc/{fix_mesh_surface_stress.txt => mesh_module_stress.txt} (58%)
create mode 100644 doc/objects.inv
create mode 100644 doc/search.html
create mode 100644 doc/searchindex.js
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/README.md
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/cleanCase.sh
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/codeInfo.pascal
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/in.DEM
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/in.liggghts_init
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/in.liggghts_run
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/particle.data
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/particleFew.data
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/particleTemp.profile
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/heat.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/heat_fewParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/heat_multiParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/heat_singleParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/radius.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/radius_fewParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/radius_multiParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/0/radius_singleParticle.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/genPascalInput.m
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/in.pascal
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/plotMe.m
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/settings/coupling_liggghts.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/settings/integrator.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/settings/model_heatCapacity_solid.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/settings/model_heatDensity_solid.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/pascal/settings/model_heatThermalConductivity_solid.json
copy examples/LIGGGHTS/Tutorials_public/ParScale/{heatTransferBed_paScal => fluidizedBedTempParScale}/post/.gitignore (100%)
rename src/style_body.h => examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/post/restart/.dummy (100%)
copy examples/LIGGGHTS/Tutorials_public/ParScale/{heatTransferBed_paScal/post => fluidizedBedTempParScale/post/restart}/.gitignore (100%)
create mode 100644 examples/LIGGGHTS/Tutorials_public/ParScale/fluidizedBedTempParScale/settings/parscale.json
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/data/input.data
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/force_comparison.plot
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/in.hydrogel_default
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/in.hydrogel_multicontact
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/meshes/piston_hydrogel.stl
create mode 100644 examples/LIGGGHTS/Tutorials_public/hydrogel_multicontact/post/.gitignore
create mode 100644 src/.gitignore
create mode 100644 src/MAKE/CMakeLists_Catalyst.txt
create mode 100644 src/MAKE/Makefile.auto
copy src/MAKE/{Makefile.fedora_vtk_fpic => Makefile.lise_fpic} (90%)
rename src/MAKE/{Makefile.ubuntu_15p10_vtk => Makefile.mpi} (76%)
delete mode 100644 src/MAKE/Makefile.ubuntu_15p10_vtk_debug
delete mode 100644 src/MAKE/Makefile.ubuntu_15p10_vtk_fpic
create mode 100644 src/MAKE/Makefile.user_default
rename src/MAKE/{ => deprecated}/Makefile.altix (100%)
rename src/MAKE/{ => deprecated}/Makefile.bgl (100%)
rename src/MAKE/{ => deprecated}/Makefile.chama (100%)
rename src/MAKE/{ => deprecated}/Makefile.clang (100%)
rename src/MAKE/{ => deprecated}/Makefile.cygwin (100%)
rename src/MAKE/{ => deprecated}/Makefile.encanto (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_debug (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_debug_opt (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_fpic (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_fpic_debug (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_gp (100%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_vtk_fpic (97%)
rename src/MAKE/{ => deprecated}/Makefile.fedora_vtk_fpic_debug (97%)
rename src/MAKE/{ => deprecated}/Makefile.fink (100%)
rename src/MAKE/{ => deprecated}/Makefile.g++ (100%)
rename src/MAKE/{ => deprecated}/Makefile.g++3 (100%)
rename src/MAKE/{ => deprecated}/Makefile.g++_mingw64 (100%)
rename src/MAKE/{ => deprecated}/Makefile.glory (100%)
rename src/MAKE/{ => deprecated}/Makefile.jaguar (100%)
rename src/MAKE/{ => deprecated}/Makefile.lam (100%)
rename src/MAKE/{ => deprecated}/Makefile.linux (100%)
rename src/MAKE/{ => deprecated}/Makefile.mac (100%)
rename src/MAKE/{ => deprecated}/Makefile.mac_mpi (100%)
rename src/MAKE/{ => deprecated}/Makefile.mingw (100%)
rename src/MAKE/{ => deprecated}/Makefile.mkl (100%)
rename src/MAKE/{ => deprecated}/Makefile.odin (100%)
rename src/MAKE/{ => deprecated}/Makefile.openmpi (100%)
rename src/MAKE/{ => deprecated}/Makefile.pgi (100%)
rename src/MAKE/{ => deprecated}/Makefile.power5 (100%)
rename src/MAKE/{ => deprecated}/Makefile.qed (100%)
rename src/MAKE/{ => deprecated}/Makefile.redsky (100%)
rename src/MAKE/{ => deprecated}/Makefile.sdsc (100%)
rename src/MAKE/{ => deprecated}/Makefile.seaborg (100%)
rename src/MAKE/{ => deprecated}/Makefile.serial_debug (100%)
rename src/MAKE/{ => deprecated}/Makefile.sgi (100%)
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rename src/MAKE/{ => deprecated}/Makefile.tacc (100%)
rename src/MAKE/{ => deprecated}/Makefile.tbird (100%)
rename src/MAKE/{ => deprecated}/Makefile.tesla (100%)
rename src/MAKE/{ => deprecated}/Makefile.tunnison (100%)
rename src/MAKE/{ => deprecated}/Makefile.ubuntuVTK (94%)
rename src/MAKE/{ => deprecated}/Makefile.ubuntuVTK6 (96%)
copy src/MAKE/{Makefile.ubuntu_convex_vtk5p10 => deprecated/Makefile.ubuntuVTKConvex} (86%)
rename src/MAKE/{Makefile.ubuntu_convex_vtk5p10 => deprecated/Makefile.ubuntuVTKConvex_debug} (80%)
rename src/MAKE/{ => deprecated}/Makefile.ubuntuVTK_debug (98%)
rename src/MAKE/{ => deprecated}/Makefile.ubuntuVTK_fpic (97%)
rename src/MAKE/{ => deprecated}/Makefile.ubuntuVTK_fpic_debug (97%)
rename src/MAKE/{ => deprecated}/Makefile.xe6 (100%)
rename src/MAKE/{ => deprecated}/Makefile.xt3 (100%)
rename src/MAKE/{ => deprecated}/Makefile.xt5 (100%)
create mode 100644 src/MAKE/deprecated/_README
delete mode 100644 src/WINDOWS/GenerateHeaders.bat
delete mode 100644 src/WINDOWS/extra/dirent.h
delete mode 100644 src/WINDOWS/extra/erf.h
delete mode 100644 src/WINDOWS/extra/erf_namd.c
delete mode 100644 src/WINDOWS/extra/fftw2/FFTW2dll.dll
delete mode 100644 src/WINDOWS/extra/fftw2/FFTW2dll.lib
delete mode 100644 src/WINDOWS/extra/fftw2/FFTW2st.lib
delete mode 100644 src/WINDOWS/extra/fftw2/RFFTW2dll.dll
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delete mode 100644 src/WINDOWS/extra/sys/time.h
delete mode 100644 src/WINDOWS/extra/unistd.h
create mode 100644 src/cohesion_model_base.h
create mode 100644 src/compute_erotate.cpp
copy src/{compute_rigid.h => compute_erotate.h} (76%)
copy src/{fix_multisphere_break.h => contact_model_base.h} (72%)
create mode 100644 src/dump_custom_vtm.cpp
create mode 100644 src/dump_custom_vtm.h
create mode 100644 src/dump_local_gran.cpp
create mode 100644 src/dump_local_gran.h
create mode 100644 src/dump_mesh.cpp
copy src/{dump_mesh_vtk.h => dump_mesh.h} (52%)
create mode 100644 src/dump_particle.cpp
create mode 100644 src/dump_particle.h
create mode 100644 src/dump_vtk.cpp
copy src/{fix_cfd_coupling_convection.h => dump_vtk.h} (76%)
create mode 100644 src/error_special.h
create mode 100644 src/fix_calculate_energy_wall.h
create mode 100644 src/fix_insert_stream_predefined.h
rename src/{fix_property_atom_timetracer.cpp => fix_property_atom_region_tracer.cpp} (64%)
rename src/{fix_property_atom_timetracer.h => fix_property_atom_region_tracer.h} (74%)
delete mode 100644 src/granular_styles.cpp
create mode 100644 src/granular_styles.h
copy src/{compute_rigid.h => mesh_module.cpp} (80%)
copy src/{string_liggghts.h => mesh_module.h} (63%)
create mode 100644 src/mesh_module_liquidtransfer.cpp
copy src/{string_liggghts.h => mesh_module_liquidtransfer.h} (57%)
rename src/{fix_mesh_surface_stress.cpp => mesh_module_stress.cpp} (61%)
rename src/{fix_mesh_surface_stress.h => mesh_module_stress.h} (83%)
create mode 100644 src/mesh_module_stress_servo.cpp
rename src/{fix_mesh_surface_stress_servo.h => mesh_module_stress_servo.h} (88%)
delete mode 100644 src/mesh_mover.cpp
create mode 100644 src/mesh_mover_linear.cpp
copy src/{multisphere_I.h => mesh_mover_linear.h} (50%)
create mode 100644 src/mesh_mover_rotation.cpp
create mode 100644 src/mesh_mover_rotation.h
copy src/{compute_rigid.h => neigh_modify.h} (81%)
delete mode 100644 src/nonspherical_flags.h
create mode 100644 src/normal_model_base.h
copy src/{string_liggghts.h => region_neighbor_list_base.h} (72%)
copy src/{fix_heat_gran_conduction.h => rolling_model_base.h} (51%)
copy src/{compute_com.cpp => run_time.cpp} (70%)
copy src/{run.h => run_time.h} (88%)
copy src/{compute_nparticles_tracer_region.h => signal_handling.cpp} (58%)
copy src/{compute_rigid.h => signal_handling.h} (80%)
create mode 100644 src/sort_buffer.cpp
copy src/{properties.h => sort_buffer.h} (58%)
delete mode 100644 src/style_angle.h
delete mode 100644 src/style_atom.h
delete mode 100644 src/style_bond.h
delete mode 100644 src/style_cfd_datacoupling.h
delete mode 100644 src/style_cfd_regionmodel.h
delete mode 100644 src/style_cohesion_model.h
delete mode 100644 src/style_command.h
delete mode 100644 src/style_compute.h
delete mode 100644 src/style_contact_model.h
delete mode 100644 src/style_dihedral.h
delete mode 100644 src/style_dump.h
delete mode 100644 src/style_fix.h
delete mode 100644 src/style_improper.h
delete mode 100644 src/style_integrate.h
delete mode 100644 src/style_kspace.h
delete mode 100644 src/style_lb.h
delete mode 100644 src/style_minimize.h
delete mode 100644 src/style_normal_model.h
delete mode 100644 src/style_pair.h
delete mode 100644 src/style_reader.h
delete mode 100644 src/style_region.h
delete mode 100644 src/style_rolling_model.h
delete mode 100644 src/style_sph_kernel.h
delete mode 100644 src/style_surface_model.h
delete mode 100644 src/style_tangential_model.h
delete mode 100644 src/superquadric_flag.h
create mode 100644 src/surface_model_base.h
create mode 100644 src/tangential_model_base.h
delete mode 100644 src/version_liggghts.h
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