[adios] branch debian/master updated (38b4c53 -> 84fe379)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Wed Jul 19 08:49:26 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch debian/master
in repository adios.
from 38b4c53 Fix support for multiple py3 versions. Closes: #867177
new c0f5b6d new upstream release 1.12.0
new 7b76757 Merge tag 'upstream/1.12.0' into debian/master
new 0bc7984 New upstream release
new a8b16bf Add gdb.conf file
new 84fe379 typo in py3vers
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 364 +-
Makefile.in | 13 +-
NEWS | 18 +
aclocal.m4 | 2 +
cmake_init | 321 +-
config.h.cmake | 19 +-
config.h.in | 12 +
config/ac_bzip2.m4 | 4 +-
config/ac_dataspaces.m4 | 50 +-
config/ac_dimes.m4 | 44 +-
config/ac_flexpath.m4 | 63 +-
config/ac_lz4.m4 | 83 +
config/ac_sz.m4 | 73 +
config/ac_zlib.m4 | 4 +-
config/acx_pthread.m4 | 1 +
config/config.guess | 364 +-
config/config.sub | 105 +-
config/libtool.m4 | 27 +-
config/ltmain.sh | 37 +-
configure | 2438 +---
configure.ac | 79 +-
debian/changelog | 8 +
debian/gbp.conf | 16 +
debian/rules | 2 +-
examples/C/Makefile.in | 13 +-
examples/C/arrays/Makefile.in | 13 +-
examples/C/attributes/Makefile.in | 13 +-
examples/C/flexpath_arrays/Makefile.in | 13 +-
.../global_range_select/Makefile.in | 13 +-
.../C/flexpath_arrays/process_select/Makefile.in | 13 +-
examples/C/global-array-time/Makefile.in | 13 +-
examples/C/global-array/Makefile.in | 13 +-
examples/C/global-array/adios_read_chunk.c | 123 +-
examples/C/global-array/adios_read_global.c | 65 +-
examples/C/global-array/adios_read_gpp.c | 21 +-
examples/C/global-array/adios_read_writeblock.c | 82 +-
examples/C/global-array/gread_temperature.ch | 2 +-
examples/C/icee_arrays/Makefile.in | 13 +-
examples/C/icee_arrays/array/Makefile.in | 13 +-
examples/C/manual/Makefile.in | 13 +-
examples/C/query/Makefile.in | 13 +-
examples/C/query/query_table.c | 2 +-
examples/C/query/query_vars.c | 4 +-
examples/C/read_all/Makefile.in | 13 +-
examples/C/scalars/Makefile.in | 13 +-
examples/C/schema/Makefile.in | 13 +-
examples/C/stat/Makefile.in | 13 +-
examples/C/time_aggregation/Makefile.in | 13 +-
examples/C/transforms/Makefile.in | 13 +-
examples/Fortran/Makefile.in | 13 +-
examples/Fortran/arrays/Makefile.in | 13 +-
examples/Fortran/global-array-time/Makefile.in | 13 +-
examples/Fortran/global-array/Makefile.in | 13 +-
examples/Fortran/scalars/Makefile.in | 13 +-
examples/Fortran/schema/Makefile.in | 13 +-
examples/Makefile.in | 13 +-
examples/staging/stage_write/stage_write.c | 2 +-
.../staging/stage_write_varyingsize/stage_write.c | 2 +-
runconf | 580 +-
scripts/FindADIOS.cmake | 13 +-
src/CMakeLists.txt | 501 +-
src/Makefile.am | 7 +-
src/Makefile.in | 89 +-
src/core/adios_bp_v1.c | 46 +-
src/core/adios_clock.h | 3 +
src/core/adios_internals.c | 34 +-
src/core/adios_internals.h | 7 +-
src/core/adios_internals_mxml.c | 12 +-
src/core/adios_subvolume.c | 8 +-
src/core/adios_transform_methods.c | 5 +-
src/core/adiost_callback_internal.c | 185 +
src/core/adiost_callback_internal.h | 85 +
src/core/adiost_default_tool.c | 348 +
src/core/bp_utils.c | 226 +-
src/core/bp_utils.h | 4 +-
src/core/common_adios.c | 2451 ++--
src/core/common_read.c | 25 +-
src/core/flexpath.h | 179 +-
src/core/globals.c | 104 +-
src/core/globals.h | 4 +
src/mxml/Makefile.in | 13 +-
src/public/adios_error.h | 1 +
src/public/adios_version.h | 6 +-
src/public/adiost_callback_api.h | 153 +
src/public/mpidummy.h | 3 +
src/read/read_bp.c | 84 +-
src/read/read_flexpath.c | 2090 ++-
src/transforms/Makefile.plugins | 8 +
src/transforms/adios_transform_lz4_common.h | 18 +
src/transforms/adios_transform_lz4_read.c | 170 +
src/transforms/adios_transform_lz4_write.c | 278 +
src/transforms/adios_transform_sz_read.c | 122 +
src/transforms/adios_transform_sz_write.c | 343 +
src/transforms/transform_plugins.h | 3 +-
src/write/adios_flexpath.c | 2043 ++-
src/write/adios_icee.c | 4 +-
src/write/adios_mpi.c | 6 +
src/write/adios_mpi_amr.c | 5 +
src/write/adios_posix.c | 183 +-
src/zfp/Makefile.in | 13 +-
tests/C/Makefile.in | 13 +-
tests/C/fgr_tests/Makefile.in | 13 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 13 +-
tests/C/flexpath_tests/1D_arr_global/reader.c | 51 +-
tests/C/flexpath_tests/1D_arr_global/writer.c | 24 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 13 +-
.../C/flexpath_tests/1D_arr_global_noxml/writer.c | 10 +-
tests/C/flexpath_tests/CMakeLists.txt | 1 -
tests/C/flexpath_tests/Makefile.am | 2 +-
tests/C/flexpath_tests/Makefile.in | 15 +-
tests/C/flexpath_tests/README | 5 +-
tests/C/flexpath_tests/common/utils.c | 12 +-
.../global_range_select/CMakeLists.txt | 12 +-
.../flexpath_tests/global_range_select/Makefile.am | 18 +-
.../flexpath_tests/global_range_select/Makefile.in | 74 +-
.../global_range_select/arrays_read.c | 113 -
.../global_range_select/arrays_write.c | 58 -
.../C/flexpath_tests/global_range_select/reader.c | 132 +
.../{arrays.xml => test_config_flex.xml} | 2 +-
.../C/flexpath_tests/global_range_select/writer.c | 77 +
tests/C/flexpath_tests/include/misc.h | 4 -
tests/C/flexpath_tests/include/test_common.h | 38 +-
tests/C/flexpath_tests/include/utils.h | 2 +-
tests/C/flexpath_tests/local_arrays/Makefile.am | 18 +
.../{maya_append => local_arrays}/Makefile.in | 71 +-
.../{1D_arr_global => local_arrays}/cfg.h | 0
.../{1D_arr_global_noxml => local_arrays}/reader.c | 9 +-
.../{1D_arr_global_noxml => local_arrays}/writer.c | 24 +-
tests/C/flexpath_tests/maya_append/CMakeLists.txt | 15 -
tests/C/flexpath_tests/maya_append/Makefile.am | 19 -
tests/C/flexpath_tests/maya_append/cfg.h | 26 -
tests/C/flexpath_tests/maya_append/reader.c | 137 -
tests/C/flexpath_tests/maya_append/readme.txt | 64 -
tests/C/flexpath_tests/maya_append/writer.c | 133 -
tests/C/flexpath_tests/maya_noxml/Makefile.in | 13 +-
tests/C/flexpath_tests/maya_noxml/reader.c | 71 +-
tests/C/flexpath_tests/maya_noxml/writer.c | 118 +-
tests/C/flexpath_tests/scalar/Makefile.in | 13 +-
tests/C/flexpath_tests/scalar/writer.c | 10 +-
tests/C/query/Makefile.in | 13 +-
tests/C/query/alacrity/Makefile.in | 13 +-
tests/C/query/alacrity/adios_alac_query.c | 2 +-
tests/C/query/common/Makefile.in | 13 +-
tests/C/query/fastbit/Makefile.in | 13 +-
tests/Fortran/Makefile.in | 13 +-
tests/Makefile.in | 13 +-
tests/bp_read/Makefile.in | 13 +-
tests/genarray/CMakeLists.txt | 18 +-
tests/genarray/Makefile.am | 18 +-
tests/genarray/Makefile.in | 33 +-
tests/genarray/copyarray.F90 | 60 +-
tests/genarray/genarray.F90 | 53 +-
tests/genarray/genarray.xml | 1 -
tests/genarray/genarray2D.F90 | 10 +-
tests/genarray/genarray3d.xml | 1 -
tests/suite/Makefile.in | 13 +-
tests/suite/programs/CMakeLists.txt | 5 +-
tests/suite/programs/Makefile.am | 8 +-
tests/suite/programs/Makefile.in | 38 +-
tests/suite/programs/adios_amr_write.c | 1 +
tests/suite/programs/adios_amr_write_2vars.c | 1 +
tests/suite/programs/big_file.c | 12 +-
tests/suite/programs/blocks.c | 24 +-
tests/suite/programs/build_standard_dataset.c | 2 +-
tests/suite/programs/examples/CMakeLists.txt | 5 +
tests/suite/programs/examples/Makefile.in | 13 +-
.../programs/examples/attributes/CMakeLists.txt | 10 +-
.../suite/programs/examples/attributes/Makefile.in | 13 +-
.../programs/examples/global_array/CMakeLists.txt | 17 +-
.../programs/examples/global_array/Makefile.in | 13 +-
.../examples/global_array/global_array_read_C.c | 2 +-
.../global_array/global_array_read_byid_noxml_C.c | 2 +-
.../global_array/global_array_read_noxml_C.c | 2 +-
.../examples/global_array_time/CMakeLists.txt | 22 +-
.../examples/global_array_time/Makefile.am | 9 +-
.../examples/global_array_time/Makefile.in | 42 +-
.../global_array_time/global_array_time_aggr_C.xml | 2 +-
.../global_array_time_read_as_file_C.c | 4 +-
.../global_array_time_read_as_stream_C.c | 4 +-
...e_C.c => global_array_time_write_multifile_C.c} | 26 +-
.../programs/examples/local_array/CMakeLists.txt | 8 +-
.../programs/examples/local_array/Makefile.in | 13 +-
.../suite/programs/examples/scalars/CMakeLists.txt | 12 +-
tests/suite/programs/examples/scalars/Makefile.in | 13 +-
.../programs/examples/scalars/scalars_read_C.c | 4 +-
tests/suite/programs/many_vars.c | 2 +-
tests/suite/programs/reuse_dim.c | 1 +
tests/suite/programs/selections.c | 1 +
tests/suite/programs/set_path.c | 17 +-
tests/suite/programs/set_path_var.c | 2 +-
tests/suite/programs/steps_read_file.c | 2 +-
tests/suite/programs/steps_read_stream.c | 2 +-
tests/suite/programs/test_singlevalue.c | 350 +
tests/suite/programs/transforms_writeblock_read.c | 2 +-
tests/suite/tests/05_global_array_time.sh | 69 +-
.../{17_blockinfo.sh => 21_test_singlevalue.sh} | 18 +-
tests/test_src/Makefile.am | 8 +-
tests/test_src/Makefile.in | 69 +-
tests/test_src/query_minmax.c | 8 +-
tests/test_src/read_points_3d.c | 774 +
utils/Makefile.in | 13 +-
utils/adios_lint/Makefile.in | 13 +-
utils/adios_list_methods/Makefile.in | 13 +-
utils/bp2ascii/Makefile.in | 13 +-
utils/bp2bp/Makefile.in | 13 +-
utils/bp2bp/bp2bp.c | 2 +-
utils/bp2h5/Makefile.in | 13 +-
utils/bp2h5/bp2h5.c | 4 +-
utils/bp2ncd/Makefile.in | 13 +-
utils/bpdiff/Makefile.in | 13 +-
utils/bpdump/Makefile.in | 13 +-
utils/bpls/Makefile.in | 13 +-
utils/bpls/bpls.c | 28 +-
utils/bpmeta/Makefile.in | 13 +-
utils/bpmeta/bpmeta.c | 70 +-
utils/bprecover/Makefile.in | 13 +-
utils/bpsplit/Makefile.in | 13 +-
utils/bpsplit/bpappend.c | 2 +
utils/bpsplit/bpsplit.c | 2 +
utils/fastbit/Makefile.in | 13 +-
utils/fastbit/adios_index_fastbit.c | 6 +-
utils/gpp/Makefile.in | 13 +-
utils/gpp/gpp.py | 8 +-
utils/gpp/gpp.py.in | 8 +-
utils/skel/Makefile.in | 13 +-
utils/skel/etc/Makefile.in | 13 +-
utils/skel/etc/templates/source_write_c.tmpl | 2 +-
utils/skel/src/Makefile.in | 13 +-
utils/skeldump/Makefile.in | 13 +-
wrappers/numpy/adios.cpp | 14013 ++++++++++--------
wrappers/numpy/adios.pyx | 90 +-
wrappers/numpy/adios_mpi.cpp | 14269 +++++++++++--------
wrappers/numpy/adios_mpi.pyx | 90 +-
wrappers/numpy/adios_mpi2serial.sed | 2 +
wrappers/numpy/build-and-install.sh | 2 +
wrappers/numpy/doc/source/build.rst | 109 +-
wrappers/numpy/doc/source/conf.py | 4 +-
wrappers/numpy/doc/source/index.rst | 1 +
wrappers/numpy/doc/source/quick.rst | 24 +-
wrappers/numpy/example/staging/adios_read_mpi.py | 7 +-
wrappers/numpy/src/__init__.py | 2 +-
wrappers/numpy/src_mpi/__init__.py | 2 +-
wrappers/numpy/test/test_adios_writer_unittest.py | 47 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 4 +-
wrappers/numpy/tests/test_adios_writer.py | 3 +-
245 files changed, 28664 insertions(+), 19016 deletions(-)
create mode 100644 config/ac_lz4.m4
create mode 100644 config/ac_sz.m4
create mode 100644 debian/gbp.conf
create mode 100644 src/core/adiost_callback_internal.c
create mode 100644 src/core/adiost_callback_internal.h
create mode 100644 src/core/adiost_default_tool.c
create mode 100644 src/public/adiost_callback_api.h
create mode 100644 src/transforms/adios_transform_lz4_common.h
create mode 100644 src/transforms/adios_transform_lz4_read.c
create mode 100644 src/transforms/adios_transform_lz4_write.c
create mode 100644 src/transforms/adios_transform_sz_read.c
create mode 100644 src/transforms/adios_transform_sz_write.c
delete mode 100644 tests/C/flexpath_tests/global_range_select/arrays_read.c
delete mode 100644 tests/C/flexpath_tests/global_range_select/arrays_write.c
create mode 100644 tests/C/flexpath_tests/global_range_select/reader.c
rename tests/C/flexpath_tests/global_range_select/{arrays.xml => test_config_flex.xml} (88%)
create mode 100644 tests/C/flexpath_tests/global_range_select/writer.c
create mode 100644 tests/C/flexpath_tests/local_arrays/Makefile.am
rename tests/C/flexpath_tests/{maya_append => local_arrays}/Makefile.in (91%)
copy tests/C/flexpath_tests/{1D_arr_global => local_arrays}/cfg.h (100%)
copy tests/C/flexpath_tests/{1D_arr_global_noxml => local_arrays}/reader.c (94%)
copy tests/C/flexpath_tests/{1D_arr_global_noxml => local_arrays}/writer.c (78%)
delete mode 100644 tests/C/flexpath_tests/maya_append/CMakeLists.txt
delete mode 100644 tests/C/flexpath_tests/maya_append/Makefile.am
delete mode 100644 tests/C/flexpath_tests/maya_append/cfg.h
delete mode 100644 tests/C/flexpath_tests/maya_append/reader.c
delete mode 100644 tests/C/flexpath_tests/maya_append/readme.txt
delete mode 100644 tests/C/flexpath_tests/maya_append/writer.c
create mode 100644 tests/suite/programs/examples/CMakeLists.txt
copy tests/suite/programs/examples/global_array_time/{global_array_time_write_C.c => global_array_time_write_multifile_C.c} (65%)
create mode 100644 tests/suite/programs/test_singlevalue.c
copy tests/suite/tests/{17_blockinfo.sh => 21_test_singlevalue.sh} (52%)
create mode 100644 tests/test_src/read_points_3d.c
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