[adios] 02/05: Merge tag 'upstream/1.12.0' into debian/master
Alastair McKinstry
mckinstry at moszumanska.debian.org
Wed Jul 19 08:49:29 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a commit to branch debian/master
in repository adios.
commit 7b767574e99e3183ea1ce0b831e17a8a36fc3e43
Merge: 38b4c53 c0f5b6d
Author: Alastair McKinstry <mckinstry at debian.org>
Date: Tue Jul 18 13:21:07 2017 +0100
Merge tag 'upstream/1.12.0' into debian/master
CMakeLists.txt | 364 +-
Makefile.in | 13 +-
NEWS | 18 +
aclocal.m4 | 2 +
cmake_init | 321 +-
config.h.cmake | 19 +-
config.h.in | 12 +
config/ac_bzip2.m4 | 4 +-
config/ac_dataspaces.m4 | 50 +-
config/ac_dimes.m4 | 44 +-
config/ac_flexpath.m4 | 63 +-
config/ac_lz4.m4 | 83 +
config/ac_sz.m4 | 73 +
config/ac_zlib.m4 | 4 +-
config/acx_pthread.m4 | 1 +
config/config.guess | 364 +-
config/config.sub | 105 +-
config/libtool.m4 | 27 +-
config/ltmain.sh | 37 +-
configure | 2438 +---
configure.ac | 79 +-
examples/C/Makefile.in | 13 +-
examples/C/arrays/Makefile.in | 13 +-
examples/C/attributes/Makefile.in | 13 +-
examples/C/flexpath_arrays/Makefile.in | 13 +-
.../global_range_select/Makefile.in | 13 +-
.../C/flexpath_arrays/process_select/Makefile.in | 13 +-
examples/C/global-array-time/Makefile.in | 13 +-
examples/C/global-array/Makefile.in | 13 +-
examples/C/global-array/adios_read_chunk.c | 123 +-
examples/C/global-array/adios_read_global.c | 65 +-
examples/C/global-array/adios_read_gpp.c | 21 +-
examples/C/global-array/adios_read_writeblock.c | 82 +-
examples/C/global-array/gread_temperature.ch | 2 +-
examples/C/icee_arrays/Makefile.in | 13 +-
examples/C/icee_arrays/array/Makefile.in | 13 +-
examples/C/manual/Makefile.in | 13 +-
examples/C/query/Makefile.in | 13 +-
examples/C/query/query_table.c | 2 +-
examples/C/query/query_vars.c | 4 +-
examples/C/read_all/Makefile.in | 13 +-
examples/C/scalars/Makefile.in | 13 +-
examples/C/schema/Makefile.in | 13 +-
examples/C/stat/Makefile.in | 13 +-
examples/C/time_aggregation/Makefile.in | 13 +-
examples/C/transforms/Makefile.in | 13 +-
examples/Fortran/Makefile.in | 13 +-
examples/Fortran/arrays/Makefile.in | 13 +-
examples/Fortran/global-array-time/Makefile.in | 13 +-
examples/Fortran/global-array/Makefile.in | 13 +-
examples/Fortran/scalars/Makefile.in | 13 +-
examples/Fortran/schema/Makefile.in | 13 +-
examples/Makefile.in | 13 +-
examples/staging/stage_write/stage_write.c | 2 +-
.../staging/stage_write_varyingsize/stage_write.c | 2 +-
runconf | 580 +-
scripts/FindADIOS.cmake | 13 +-
src/CMakeLists.txt | 501 +-
src/Makefile.am | 7 +-
src/Makefile.in | 89 +-
src/core/adios_bp_v1.c | 46 +-
src/core/adios_clock.h | 3 +
src/core/adios_internals.c | 34 +-
src/core/adios_internals.h | 7 +-
src/core/adios_internals_mxml.c | 12 +-
src/core/adios_subvolume.c | 8 +-
src/core/adios_transform_methods.c | 5 +-
src/core/adiost_callback_internal.c | 185 +
src/core/adiost_callback_internal.h | 85 +
src/core/adiost_default_tool.c | 348 +
src/core/bp_utils.c | 226 +-
src/core/bp_utils.h | 4 +-
src/core/common_adios.c | 2451 ++--
src/core/common_read.c | 25 +-
src/core/flexpath.h | 179 +-
src/core/globals.c | 104 +-
src/core/globals.h | 4 +
src/mxml/Makefile.in | 13 +-
src/public/adios_error.h | 1 +
src/public/adios_version.h | 6 +-
src/public/adiost_callback_api.h | 153 +
src/public/mpidummy.h | 3 +
src/read/read_bp.c | 84 +-
src/read/read_flexpath.c | 2090 ++-
src/transforms/Makefile.plugins | 8 +
src/transforms/adios_transform_lz4_common.h | 18 +
src/transforms/adios_transform_lz4_read.c | 170 +
src/transforms/adios_transform_lz4_write.c | 278 +
src/transforms/adios_transform_sz_read.c | 122 +
src/transforms/adios_transform_sz_write.c | 343 +
src/transforms/transform_plugins.h | 3 +-
src/write/adios_flexpath.c | 2043 ++-
src/write/adios_icee.c | 4 +-
src/write/adios_mpi.c | 6 +
src/write/adios_mpi_amr.c | 5 +
src/write/adios_posix.c | 183 +-
src/zfp/Makefile.in | 13 +-
tests/C/Makefile.in | 13 +-
tests/C/fgr_tests/Makefile.in | 13 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 13 +-
tests/C/flexpath_tests/1D_arr_global/reader.c | 51 +-
tests/C/flexpath_tests/1D_arr_global/writer.c | 24 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 13 +-
.../C/flexpath_tests/1D_arr_global_noxml/writer.c | 10 +-
tests/C/flexpath_tests/CMakeLists.txt | 1 -
tests/C/flexpath_tests/Makefile.am | 2 +-
tests/C/flexpath_tests/Makefile.in | 15 +-
tests/C/flexpath_tests/README | 5 +-
tests/C/flexpath_tests/common/utils.c | 12 +-
.../global_range_select/CMakeLists.txt | 12 +-
.../flexpath_tests/global_range_select/Makefile.am | 18 +-
.../flexpath_tests/global_range_select/Makefile.in | 74 +-
.../global_range_select/arrays_read.c | 113 -
.../global_range_select/arrays_write.c | 58 -
.../C/flexpath_tests/global_range_select/reader.c | 132 +
.../{arrays.xml => test_config_flex.xml} | 2 +-
.../C/flexpath_tests/global_range_select/writer.c | 77 +
tests/C/flexpath_tests/include/misc.h | 4 -
tests/C/flexpath_tests/include/test_common.h | 38 +-
tests/C/flexpath_tests/include/utils.h | 2 +-
tests/C/flexpath_tests/local_arrays/Makefile.am | 18 +
.../{maya_append => local_arrays}/Makefile.in | 71 +-
tests/C/flexpath_tests/local_arrays/cfg.h | 15 +
.../{1D_arr_global => local_arrays}/reader.c | 77 +-
.../{1D_arr_global_noxml => local_arrays}/writer.c | 24 +-
tests/C/flexpath_tests/maya_append/CMakeLists.txt | 15 -
tests/C/flexpath_tests/maya_append/Makefile.am | 19 -
tests/C/flexpath_tests/maya_append/cfg.h | 26 -
tests/C/flexpath_tests/maya_append/reader.c | 137 -
tests/C/flexpath_tests/maya_append/readme.txt | 64 -
tests/C/flexpath_tests/maya_append/writer.c | 133 -
tests/C/flexpath_tests/maya_noxml/Makefile.in | 13 +-
tests/C/flexpath_tests/maya_noxml/reader.c | 71 +-
tests/C/flexpath_tests/maya_noxml/writer.c | 118 +-
tests/C/flexpath_tests/scalar/Makefile.in | 13 +-
tests/C/flexpath_tests/scalar/writer.c | 10 +-
tests/C/query/Makefile.in | 13 +-
tests/C/query/alacrity/Makefile.in | 13 +-
tests/C/query/alacrity/adios_alac_query.c | 2 +-
tests/C/query/common/Makefile.in | 13 +-
tests/C/query/fastbit/Makefile.in | 13 +-
tests/Fortran/Makefile.in | 13 +-
tests/Makefile.in | 13 +-
tests/bp_read/Makefile.in | 13 +-
tests/genarray/CMakeLists.txt | 18 +-
tests/genarray/Makefile.am | 18 +-
tests/genarray/Makefile.in | 33 +-
tests/genarray/copyarray.F90 | 60 +-
tests/genarray/genarray.F90 | 53 +-
tests/genarray/genarray.xml | 1 -
tests/genarray/genarray2D.F90 | 10 +-
tests/genarray/genarray3d.xml | 1 -
tests/suite/Makefile.in | 13 +-
tests/suite/programs/CMakeLists.txt | 5 +-
tests/suite/programs/Makefile.am | 8 +-
tests/suite/programs/Makefile.in | 38 +-
tests/suite/programs/adios_amr_write.c | 1 +
tests/suite/programs/adios_amr_write_2vars.c | 1 +
tests/suite/programs/big_file.c | 12 +-
tests/suite/programs/blocks.c | 24 +-
tests/suite/programs/build_standard_dataset.c | 2 +-
tests/suite/programs/examples/CMakeLists.txt | 5 +
tests/suite/programs/examples/Makefile.in | 13 +-
.../programs/examples/attributes/CMakeLists.txt | 10 +-
.../suite/programs/examples/attributes/Makefile.in | 13 +-
.../programs/examples/global_array/CMakeLists.txt | 17 +-
.../programs/examples/global_array/Makefile.in | 13 +-
.../examples/global_array/global_array_read_C.c | 2 +-
.../global_array/global_array_read_byid_noxml_C.c | 2 +-
.../global_array/global_array_read_noxml_C.c | 2 +-
.../examples/global_array_time/CMakeLists.txt | 22 +-
.../examples/global_array_time/Makefile.am | 9 +-
.../examples/global_array_time/Makefile.in | 42 +-
.../global_array_time/global_array_time_aggr_C.xml | 2 +-
.../global_array_time_read_as_file_C.c | 4 +-
.../global_array_time_read_as_stream_C.c | 4 +-
.../global_array_time_write_multifile_C.c | 64 +
.../programs/examples/local_array/CMakeLists.txt | 8 +-
.../programs/examples/local_array/Makefile.in | 13 +-
.../suite/programs/examples/scalars/CMakeLists.txt | 12 +-
tests/suite/programs/examples/scalars/Makefile.in | 13 +-
.../programs/examples/scalars/scalars_read_C.c | 4 +-
tests/suite/programs/many_vars.c | 2 +-
tests/suite/programs/reuse_dim.c | 1 +
tests/suite/programs/selections.c | 1 +
tests/suite/programs/set_path.c | 17 +-
tests/suite/programs/set_path_var.c | 2 +-
tests/suite/programs/steps_read_file.c | 2 +-
tests/suite/programs/steps_read_stream.c | 2 +-
tests/suite/programs/test_singlevalue.c | 350 +
tests/suite/programs/transforms_writeblock_read.c | 2 +-
tests/suite/tests/05_global_array_time.sh | 69 +-
tests/suite/tests/21_test_singlevalue.sh | 37 +
tests/test_src/Makefile.am | 8 +-
tests/test_src/Makefile.in | 69 +-
tests/test_src/query_minmax.c | 8 +-
tests/test_src/read_points_3d.c | 774 +
utils/Makefile.in | 13 +-
utils/adios_lint/Makefile.in | 13 +-
utils/adios_list_methods/Makefile.in | 13 +-
utils/bp2ascii/Makefile.in | 13 +-
utils/bp2bp/Makefile.in | 13 +-
utils/bp2bp/bp2bp.c | 2 +-
utils/bp2h5/Makefile.in | 13 +-
utils/bp2h5/bp2h5.c | 4 +-
utils/bp2ncd/Makefile.in | 13 +-
utils/bpdiff/Makefile.in | 13 +-
utils/bpdump/Makefile.in | 13 +-
utils/bpls/Makefile.in | 13 +-
utils/bpls/bpls.c | 28 +-
utils/bpmeta/Makefile.in | 13 +-
utils/bpmeta/bpmeta.c | 70 +-
utils/bprecover/Makefile.in | 13 +-
utils/bpsplit/Makefile.in | 13 +-
utils/bpsplit/bpappend.c | 2 +
utils/bpsplit/bpsplit.c | 2 +
utils/fastbit/Makefile.in | 13 +-
utils/fastbit/adios_index_fastbit.c | 6 +-
utils/gpp/Makefile.in | 13 +-
utils/gpp/gpp.py | 8 +-
utils/gpp/gpp.py.in | 8 +-
utils/skel/Makefile.in | 13 +-
utils/skel/etc/Makefile.in | 13 +-
utils/skel/etc/templates/source_write_c.tmpl | 2 +-
utils/skel/src/Makefile.in | 13 +-
utils/skeldump/Makefile.in | 13 +-
wrappers/numpy/adios.cpp | 14013 ++++++++++--------
wrappers/numpy/adios.pyx | 90 +-
wrappers/numpy/adios_mpi.cpp | 14269 +++++++++++--------
wrappers/numpy/adios_mpi.pyx | 90 +-
wrappers/numpy/adios_mpi2serial.sed | 2 +
wrappers/numpy/build-and-install.sh | 2 +
wrappers/numpy/doc/source/build.rst | 109 +-
wrappers/numpy/doc/source/conf.py | 4 +-
wrappers/numpy/doc/source/index.rst | 1 +
wrappers/numpy/doc/source/quick.rst | 24 +-
wrappers/numpy/example/staging/adios_read_mpi.py | 7 +-
wrappers/numpy/src/__init__.py | 2 +-
wrappers/numpy/src_mpi/__init__.py | 2 +-
wrappers/numpy/test/test_adios_writer_unittest.py | 47 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 4 +-
wrappers/numpy/tests/test_adios_writer.py | 3 +-
242 files changed, 28763 insertions(+), 19031 deletions(-)
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