[sasmodels] branch master updated (d97b543 -> 49c2b17)
Stuart Prescott
stuart at debian.org
Mon Nov 6 11:23:35 UTC 2017
This is an automated email from the git hooks/post-receive script.
stuart pushed a change to branch master
in repository sasmodels.
from d97b543 Add minimal gbp.conf
adds a71e9df New upstream version 0.97~git20171104
new 24704c0 Merge tag 'upstream/0.97_git20171104'
new fa105be Require a sufficiently new sphinx
new a9231cd Drop python3 patch from usptream
new 9b26776 Add extra paths required at runtime
new 705eab0 Make sure failing tests fail the build
new c368e64 Disable one failing test that is upstream problem
new b0b109d Remove obsolete extra comments about licence
new 67c2253 Update copyright information
new 49c2b17 Add changelog for recent work
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitattributes | 5 +
.gitignore | 4 +-
.travis.yml | 67 +-
.travis/travis_rsa.enc | Bin 0 -> 1680 bytes
LICENSE.txt | 15 +-
appveyor.yml | 78 ++
debian/changelog | 10 +
debian/control | 4 +-
debian/copyright | 53 +-
debian/copyright-scan-patterns.yml | 13 +
debian/fix.scanned.copyright | 8 +
debian/patches/disable-failing-test.patch | 19 +
debian/patches/python3-compat.patch | 16 -
debian/patches/series | 2 +-
debian/rules | 11 +-
debian/tests/python-sasmodels | 2 +
debian/tests/python3-sasmodels | 2 +
deploy.sh | 8 +
doc/conf.py | 5 +
doc/developer/calculator.rst | 8 +-
doc/developer/index.rst | 1 +
doc/developer/overview.rst | 252 +++++
doc/genapi.py | 24 +-
doc/genmodel.py | 2 +
doc/gentoc.py | 41 +-
doc/guide/gpu_setup.rst | 156 +++
doc/guide/index.rst | 57 +-
doc/guide/install.rst | 54 +
doc/guide/intro.rst | 59 ++
doc/guide/magnetism/mag_img/M_angles_pic.png | Bin 0 -> 116924 bytes
doc/guide/magnetism/mag_img/mag_vector.png | Bin 0 -> 39047 bytes
doc/{ref => guide}/magnetism/magnetism.rst | 33 +-
doc/guide/pd/pd_gaussian.jpg | Bin 0 -> 16860 bytes
doc/guide/pd/pd_lognormal.jpg | Bin 0 -> 13357 bytes
doc/guide/pd/pd_rectangular.jpg | Bin 0 -> 16313 bytes
doc/guide/pd/pd_schulz.jpg | Bin 0 -> 12845 bytes
doc/guide/pd/polydispersity.rst | 224 +++++
doc/guide/plugin.rst | 1039 ++++++++++++++++++++
doc/{ref => guide}/refs.rst | 0
doc/guide/resolution.rst | 294 ++++++
doc/guide/resolution_2d_rotation.png | Bin 0 -> 16767 bytes
doc/guide/scripting.rst | 116 +++
doc/{ref => guide}/sesans/SESANSinSASVIEW.pdf | Bin
doc/guide/sesans/sans_to_sesans.rst | 32 +
doc/{ref => guide}/sesans/sesans_fitting.rst | 289 +++---
.../sesans/sesans_img/HardSphereLineFitSasView.png | Bin
.../sesans/sesans_img/SphereLineFitSasView.png | Bin
doc/index.rst | 27 +-
doc/ref/gpu/gpu_computations.rst | 66 --
doc/ref/gpu/opencl_installation.rst | 59 --
doc/ref/index.rst | 16 -
doc/ref/intro.rst | 47 -
doc/ref/magnetism/mag_img/M_angles_pic.bmp | Bin 870118 -> 0 bytes
doc/ref/magnetism/mag_img/mag_vector.bmp | Bin 1097766 -> 0 bytes
doc/ref/sesans/sans_to_sesans.rst | 26 -
doc/rst_prolog | 49 -
example/093191_201.dat | 136 +++
example/093192_202.dat | 136 +++
example/093193_203.dat | 136 +++
example/093194_204.dat | 136 +++
example/093195_205.dat | 136 +++
example/batch_fit.py | 140 +++
example/cylinder_eval.py | 18 +
example/model.py | 10 +-
example/model_ellipsoid_hayter_msa.py | 41 +
example/oriented_usans.py | 10 +-
example/sesans_sphere_2micron.py | 94 +-
example/simul_fit.py | 61 ++
explore/J1.py | 106 --
explore/J1c.py | 103 --
explore/angular_pd.py | 4 +-
explore/cyl.py | 150 ---
explore/jitter.py | 243 +++++
explore/lgamma.py | 106 --
explore/log_gamma.py | 101 --
explore/precision.py | 601 +++++++++++
explore/sinc.py | 84 --
explore/sph_j1c.py | 145 ---
sasmodels/__init__.py | 2 +-
sasmodels/alignment.py | 1 -
sasmodels/bumps_model.py | 477 ++++-----
sasmodels/compare.py | 699 ++++++++-----
sasmodels/conversion_table.py | 23 +-
sasmodels/core.py | 95 +-
sasmodels/custom/__init__.py | 4 +-
sasmodels/data.py | 56 +-
sasmodels/direct_model.py | 15 +-
sasmodels/generate.py | 35 +-
sasmodels/kernel_header.c | 36 +-
sasmodels/kernelcl.py | 5 +-
sasmodels/kerneldll.py | 28 +-
sasmodels/kernelpy.py | 12 +-
sasmodels/list_pars.py | 130 +--
sasmodels/mixture.py | 141 ++-
sasmodels/model_test.py | 926 ++++++++---------
sasmodels/modelinfo.py | 41 +-
sasmodels/models/adsorbed_layer.py | 13 +
sasmodels/models/barbell.py | 37 +-
sasmodels/models/bcc_paracrystal.c | 10 +-
sasmodels/models/bcc_paracrystal.py | 51 +-
sasmodels/models/be_polyelectrolyte.py | 411 ++++----
sasmodels/models/binary_hard_sphere.py | 24 +-
sasmodels/models/broad_peak.py | 16 +
sasmodels/models/capped_cylinder.py | 40 +-
sasmodels/models/core_multi_shell.py | 19 +-
sasmodels/models/core_shell_bicelle.c | 45 +-
sasmodels/models/core_shell_bicelle.py | 53 +-
sasmodels/models/core_shell_bicelle_elliptical.c | 125 +--
sasmodels/models/core_shell_bicelle_elliptical.py | 116 ++-
sasmodels/models/core_shell_cylinder.py | 34 +-
sasmodels/models/core_shell_ellipsoid.py | 50 +-
sasmodels/models/core_shell_parallelepiped.c | 87 +-
sasmodels/models/core_shell_parallelepiped.py | 71 +-
sasmodels/models/core_shell_sphere.py | 30 +-
sasmodels/models/cylinder.py | 348 ++++---
sasmodels/models/dab.py | 12 +-
sasmodels/models/ellipsoid.c | 45 +-
sasmodels/models/ellipsoid.py | 84 +-
sasmodels/models/elliptical_cylinder.c | 8 +-
sasmodels/models/elliptical_cylinder.py | 58 +-
sasmodels/models/fcc_paracrystal.c | 10 +-
sasmodels/models/fcc_paracrystal.py | 45 +-
sasmodels/models/flexible_cylinder.py | 63 +-
sasmodels/models/flexible_cylinder_elliptical.py | 20 +-
sasmodels/models/fractal.py | 24 +-
sasmodels/models/fractal_core_shell.py | 28 +-
sasmodels/models/fuzzy_sphere.py | 10 +
sasmodels/models/gauss_lorentz_gel.py | 19 +-
sasmodels/models/gaussian_peak.py | 13 +-
sasmodels/models/gel_fit.c | 4 +-
sasmodels/models/gel_fit.py | 18 +
sasmodels/models/guinier.py | 126 +--
sasmodels/models/guinier_porod.py | 17 +-
sasmodels/models/hardsphere.py | 19 +-
sasmodels/models/hayter_msa.py | 26 +-
sasmodels/models/hollow_cylinder.py | 38 +-
sasmodels/models/hollow_rectangular_prism.py | 22 +-
.../models/hollow_rectangular_prism_thin_walls.py | 11 +
sasmodels/models/img/bcc_angle_definition.png | Bin 40057 -> 0 bytes
sasmodels/models/img/cylinder_angle_definition.jpg | Bin 21668 -> 0 bytes
sasmodels/models/img/cylinder_angle_definition.png | Bin 0 -> 71546 bytes
sasmodels/models/img/cylinder_angle_projection.jpg | Bin 33955 -> 0 bytes
sasmodels/models/img/cylinder_angle_projection.png | Bin 0 -> 100678 bytes
.../img/elliptical_cylinder_angle_definition.jpg | Bin 31983 -> 0 bytes
.../img/elliptical_cylinder_angle_definition.png | Bin 0 -> 82278 bytes
.../img/elliptical_cylinder_angle_projection.png | Bin 0 -> 91783 bytes
.../models/img/parallelepiped_angle_definition.jpg | Bin 32836 -> 0 bytes
.../models/img/parallelepiped_angle_definition.png | Bin 0 -> 82272 bytes
.../models/img/parallelepiped_angle_projection.jpg | Bin 33793 -> 0 bytes
.../models/img/parallelepiped_angle_projection.png | Bin 0 -> 90805 bytes
.../models/img/sc_crystal_angle_definition.jpg | Bin 33504 -> 0 bytes
.../img/triaxial_ellipsoid_angle_projection.jpg | Bin 42102 -> 0 bytes
.../img/triaxial_ellipsoid_angle_projection.png | Bin 0 -> 182306 bytes
sasmodels/models/lamellar.py | 8 +
sasmodels/models/lamellar_hg.py | 11 +
sasmodels/models/lamellar_hg_stack_caille.py | 18 +
sasmodels/models/lamellar_stack_caille.py | 15 +
sasmodels/models/lamellar_stack_paracrystal.py | 18 +-
sasmodels/models/lib/sas_3j1x_x.c | 3 +-
sasmodels/models/lib/sas_J0.c | 7 +-
sasmodels/models/lib/sas_J1.c | 89 +-
sasmodels/models/lib/sas_erf.c | 14 +-
sasmodels/models/lib/wrc_cyl.c | 495 +++-------
sasmodels/models/line.py | 172 ++--
sasmodels/models/linear_pearls.py | 17 +-
sasmodels/models/lorentz.py | 21 +-
sasmodels/models/mass_fractal.py | 26 +-
sasmodels/models/mass_surface_fractal.py | 32 +-
sasmodels/models/mono_gauss_coil.py | 196 ++--
sasmodels/models/multilayer_vesicle.py | 44 +-
sasmodels/models/onion.py | 17 +-
sasmodels/models/parallelepiped.c | 10 +-
sasmodels/models/parallelepiped.py | 507 +++++-----
sasmodels/models/peak_lorentz.py | 12 +
sasmodels/models/pearl_necklace.py | 14 +
sasmodels/models/poly_gauss_coil.py | 253 ++---
sasmodels/models/polymer_excl_volume.py | 17 +-
sasmodels/models/polymer_micelle.py | 68 +-
sasmodels/models/porod.py | 11 +
sasmodels/models/power_law.py | 9 +
sasmodels/models/pringle.py | 20 +-
sasmodels/models/raspberry.py | 20 +
sasmodels/models/rectangular_prism.py | 13 +-
sasmodels/models/rpa.py | 23 +-
sasmodels/models/sc_paracrystal.c | 10 +-
sasmodels/models/sc_paracrystal.py | 318 +++---
sasmodels/models/sphere.py | 11 +-
sasmodels/models/spherical_sld.c | 204 ++--
sasmodels/models/spherical_sld.py | 580 ++++++-----
sasmodels/models/spinodal.py | 34 +-
sasmodels/models/squarewell.py | 298 +++---
sasmodels/models/stacked_disks.py | 83 +-
sasmodels/models/star_polymer.py | 62 +-
sasmodels/models/stickyhardsphere.py | 11 +
sasmodels/models/surface_fractal.py | 20 +-
sasmodels/models/teubner_strey.py | 19 +-
sasmodels/models/triaxial_ellipsoid.c | 47 +-
sasmodels/models/triaxial_ellipsoid.py | 331 ++++---
sasmodels/models/two_lorentzian.py | 18 +
sasmodels/models/two_power_law.py | 19 +-
sasmodels/models/unified_power_Rg.py | 37 +-
sasmodels/models/vesicle.py | 14 +
sasmodels/product.py | 54 +-
sasmodels/resolution.py | 7 +-
sasmodels/rst2html.py | 124 ++-
sasmodels/sasview_model.py | 200 ++--
sasmodels/sesans.py | 11 +-
207 files changed, 10287 insertions(+), 5421 deletions(-)
create mode 100644 .gitattributes
create mode 100644 .travis/travis_rsa.enc
create mode 100644 appveyor.yml
create mode 100644 debian/copyright-scan-patterns.yml
create mode 100644 debian/fix.scanned.copyright
create mode 100644 debian/patches/disable-failing-test.patch
delete mode 100644 debian/patches/python3-compat.patch
create mode 100644 deploy.sh
create mode 100644 doc/developer/overview.rst
create mode 100644 doc/guide/gpu_setup.rst
create mode 100644 doc/guide/install.rst
create mode 100644 doc/guide/intro.rst
create mode 100644 doc/guide/magnetism/mag_img/M_angles_pic.png
create mode 100644 doc/guide/magnetism/mag_img/mag_vector.png
rename doc/{ref => guide}/magnetism/magnetism.rst (76%)
create mode 100644 doc/guide/pd/pd_gaussian.jpg
create mode 100644 doc/guide/pd/pd_lognormal.jpg
create mode 100644 doc/guide/pd/pd_rectangular.jpg
create mode 100644 doc/guide/pd/pd_schulz.jpg
create mode 100644 doc/guide/pd/polydispersity.rst
create mode 100644 doc/guide/plugin.rst
rename doc/{ref => guide}/refs.rst (100%)
create mode 100644 doc/guide/resolution.rst
create mode 100644 doc/guide/resolution_2d_rotation.png
create mode 100644 doc/guide/scripting.rst
rename doc/{ref => guide}/sesans/SESANSinSASVIEW.pdf (100%)
create mode 100644 doc/guide/sesans/sans_to_sesans.rst
rename doc/{ref => guide}/sesans/sesans_fitting.rst (77%)
rename doc/{ref => guide}/sesans/sesans_img/HardSphereLineFitSasView.png (100%)
rename doc/{ref => guide}/sesans/sesans_img/SphereLineFitSasView.png (100%)
delete mode 100644 doc/ref/gpu/gpu_computations.rst
delete mode 100644 doc/ref/gpu/opencl_installation.rst
delete mode 100644 doc/ref/index.rst
delete mode 100644 doc/ref/intro.rst
delete mode 100644 doc/ref/magnetism/mag_img/M_angles_pic.bmp
delete mode 100644 doc/ref/magnetism/mag_img/mag_vector.bmp
delete mode 100644 doc/ref/sesans/sans_to_sesans.rst
create mode 100644 example/093191_201.dat
create mode 100644 example/093192_202.dat
create mode 100644 example/093193_203.dat
create mode 100644 example/093194_204.dat
create mode 100644 example/093195_205.dat
create mode 100755 example/batch_fit.py
create mode 100644 example/cylinder_eval.py
create mode 100644 example/model_ellipsoid_hayter_msa.py
create mode 100644 example/simul_fit.py
delete mode 100644 explore/J1.py
delete mode 100644 explore/J1c.py
delete mode 100644 explore/cyl.py
create mode 100644 explore/jitter.py
delete mode 100644 explore/lgamma.py
delete mode 100644 explore/log_gamma.py
create mode 100755 explore/precision.py
delete mode 100644 explore/sinc.py
delete mode 100644 explore/sph_j1c.py
delete mode 100644 sasmodels/models/img/bcc_angle_definition.png
delete mode 100644 sasmodels/models/img/cylinder_angle_definition.jpg
create mode 100644 sasmodels/models/img/cylinder_angle_definition.png
delete mode 100644 sasmodels/models/img/cylinder_angle_projection.jpg
create mode 100644 sasmodels/models/img/cylinder_angle_projection.png
delete mode 100644 sasmodels/models/img/elliptical_cylinder_angle_definition.jpg
create mode 100644 sasmodels/models/img/elliptical_cylinder_angle_definition.png
create mode 100644 sasmodels/models/img/elliptical_cylinder_angle_projection.png
delete mode 100644 sasmodels/models/img/parallelepiped_angle_definition.jpg
create mode 100644 sasmodels/models/img/parallelepiped_angle_definition.png
delete mode 100644 sasmodels/models/img/parallelepiped_angle_projection.jpg
create mode 100644 sasmodels/models/img/parallelepiped_angle_projection.png
delete mode 100644 sasmodels/models/img/sc_crystal_angle_definition.jpg
delete mode 100644 sasmodels/models/img/triaxial_ellipsoid_angle_projection.jpg
create mode 100644 sasmodels/models/img/triaxial_ellipsoid_angle_projection.png
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