[r-cran-zelig] branch master updated (bdb6d09 -> ca20463)
Andreas Tille
tille at debian.org
Mon Nov 27 15:40:14 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-zelig.
from bdb6d09 Rename source package from zelig to r-cran-zelig to comply with Debian Science naming convention of R packages
new 30ab718 Add Build-Depends: r-cran-aer (ITP #805257)
new e00b846 Upload to unstable
adds 16e92a5 New upstream version 5.1.5
new cdff05c Update upstream source from tag 'upstream/5.1.5'
new edaafd6 New upstream version
new 728b6e6 Build-Depends r-cran-aer was finally accepted
new 83fcaf9 Standards-Version: 4.1.1
new 4819eb4 Add Build-Depends: r-cran-codetools to enable full build-time checking
new 2c46207 Add README.source to document binary data files
new ca20463 Upload to unstable
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 82 +-
MD5 | 402 +++---
NAMESPACE | 23 +-
NEWS.md | 341 +++++
R/assertions.R | 174 +++
R/create-json.R | 29 +-
R/datasets.R | 11 +
R/interface.R | 593 +++++++++
R/model-ar.R | 69 +-
R/model-arima.R | 519 ++++----
R/model-bayes.R | 2 +-
R/model-exp.R | 95 +-
R/model-factor-bayes.R | 148 ++-
R/model-gamma-gee.R | 70 +-
R/model-gamma-survey.R | 67 +-
R/model-gamma.R | 77 +-
R/model-gee.R | 10 +-
R/model-glm.R | 4 +-
R/model-ivreg.R | 198 +++
R/model-logit-bayes.R | 89 +-
R/model-logit-gee.R | 74 +-
R/model-logit-survey.R | 76 +-
R/model-logit.R | 107 +-
R/model-lognorm.R | 96 +-
R/model-ls.R | 92 +-
R/model-ma.R | 67 +-
R/model-mlogit-bayes.R | 88 +-
R/model-negbinom.R | 60 +-
R/model-normal-bayes.R | 88 +-
R/model-normal-gee.R | 73 +-
R/model-normal-survey.R | 59 +-
R/model-normal.R | 72 +-
R/model-oprobit-bayes.R | 79 +-
R/model-poisson-bayes.R | 75 +-
R/model-poisson-gee.R | 66 +-
R/model-poisson-survey.R | 57 +-
R/model-poisson.R | 61 +-
R/model-probit-bayes.R | 83 +-
R/model-probit-gee.R | 69 +-
R/model-probit-survey.R | 91 +-
R/model-probit.R | 56 +-
R/model-quantile.R | 149 ++-
R/model-relogit.R | 225 +++-
R/model-survey.R | 116 +-
R/model-timeseries.R | 120 +-
R/model-tobit-bayes.R | 86 +-
R/model-tobit.R | 78 +-
R/model-weibull.R | 121 +-
R/model-zelig.R | 1315 ++++++++++++--------
R/plots.R | 425 ++++---
R/utils.R | 708 +++++++++--
R/wrappers.R | 462 +++++--
README.md | 224 ++++
data/CigarettesSW.tab | 97 ++
debian/README.source | 16 +
debian/changelog | 17 +-
debian/control | 6 +-
demo/00Index | 42 -
demo/demo-amelia.R | 48 -
demo/demo-data-table.R | 21 -
demo/demo-dplyr.R | 40 -
demo/demo-exp.R | 25 -
demo/demo-factor-bayes.R | 65 -
demo/demo-feedback.R | 10 -
demo/demo-gamma-gee.R | 34 -
demo/demo-gamma.R | 22 -
demo/demo-json.R | 18 -
demo/demo-logit-bayes.R | 28 -
demo/demo-logit-gee.R | 23 -
demo/demo-logit.R | 51 -
demo/demo-lognorm.R | 25 -
demo/demo-ls.R | 39 -
demo/demo-mlogit-bayes.R | 23 -
demo/demo-negbinom.R | 24 -
demo/demo-normal-bayes.R | 24 -
demo/demo-normal-gee.R | 27 -
demo/demo-normal.R | 21 -
demo/demo-oprobit-bayes.R | 26 -
demo/demo-poisson-bayes.R | 36 -
demo/demo-poisson-gee.R | 27 -
demo/demo-poisson.R | 48 -
demo/demo-probit-bayes.R | 27 -
demo/demo-probit-gee.R | 25 -
demo/demo-probit.R | 27 -
demo/demo-quantile.R | 86 --
demo/demo-range.R | 61 -
demo/demo-relogit.R | 87 --
demo/demo-roc.R | 5 -
demo/demo-scope.R | 61 -
demo/demo-setx-2.R | 48 -
demo/demo-setx-fn.R | 29 -
demo/demo-setx.R | 19 -
demo/demo-show.R | 8 -
demo/demo-signif-stars.R | 4 -
demo/demo-strata.R | 49 -
demo/demo-tobit.R | 28 -
demo/demo-tobitbayes.R | 9 -
demo/demo-weibull.R | 19 -
demo/demo-wrappers.R | 18 -
demo/demo-zip.R | 56 -
inst/JSON/zelig5models.json | 114 +-
inst/doc/quickstart.R | 70 ++
inst/doc/quickstart.Rmd | 151 +++
man/ATT.Rd | 35 +
man/CigarettesSW.Rd | 16 +
man/MatchIt.url.Rd | 2 +-
man/Median.Rd | 3 +-
man/Mode.Rd | 7 +-
man/Zelig-ar-class.Rd | 80 +-
man/Zelig-arima-class.Rd | 85 +-
man/Zelig-bayes-class.Rd | 4 +-
man/Zelig-class.Rd | 35 +-
man/Zelig-exp-class.Rd | 82 +-
man/Zelig-factor-bayes-class.Rd | 142 ++-
man/Zelig-gamma-class.Rd | 70 +-
man/Zelig-gamma-gee-class.Rd | 86 +-
man/Zelig-gamma-survey-class.Rd | 71 +-
man/Zelig-gee-class.Rd | 2 +-
man/Zelig-glm-class.Rd | 2 +-
man/Zelig-ivreg-class.Rd | 150 +++
man/Zelig-logit-bayes-class.Rd | 91 +-
man/Zelig-logit-class.Rd | 89 +-
man/Zelig-logit-gee-class.Rd | 87 +-
man/Zelig-logit-survey-class.Rd | 86 +-
man/Zelig-lognorm-class.Rd | 83 +-
man/Zelig-ls-class.Rd | 73 +-
man/Zelig-ma-class.Rd | 78 +-
man/Zelig-mlogit-bayes-class.Rd | 97 +-
man/Zelig-negbin-class.Rd | 72 +-
man/Zelig-normal-bayes-class.Rd | 96 +-
man/Zelig-normal-class.Rd | 86 +-
man/Zelig-normal-gee-class.Rd | 92 +-
man/Zelig-normal-survey-class.Rd | 70 +-
man/Zelig-oprobit-bayes-class.Rd | 79 +-
man/Zelig-poisson-bayes-class.Rd | 87 +-
man/Zelig-poisson-class.Rd | 76 +-
man/Zelig-poisson-gee-class.Rd | 80 +-
man/Zelig-poisson-survey-class.Rd | 70 +-
man/Zelig-probit-bayes-class.Rd | 92 +-
man/Zelig-probit-class.Rd | 63 +-
man/Zelig-probit-gee-class.Rd | 85 +-
man/Zelig-probit-survey-class.Rd | 102 +-
man/Zelig-quantile-class.Rd | 96 +-
man/Zelig-relogit-class.Rd | 90 +-
man/Zelig-survey-class.Rd | 2 +-
man/Zelig-timeseries-class.Rd | 2 +-
man/Zelig-tobit-bayes-class.Rd | 101 +-
man/Zelig-tobit-class.Rd | 91 +-
man/Zelig-weibull-class.Rd | 87 +-
man/Zelig.url.Rd | 2 +-
man/avg.Rd | 1 -
man/ci.plot.Rd | 9 +-
man/ci_check.Rd | 16 +
man/cluster.formula.Rd | 1 -
man/coalition2.Rd | 64 +-
man/coef-Zelig-method.Rd | 5 +-
...elig-method.Rd => coefficients-Zelig-method.Rd} | 9 +-
man/combine_coef_se.Rd | 65 +
man/createJSON.Rd | 7 +-
man/df.residual-Zelig-method.Rd | 15 +
man/expand_grid_setrange.Rd | 15 +
man/extract_setrange.Rd | 27 +
man/extract_setx.Rd | 26 +
man/factor_coef_combine.Rd | 22 +
man/figures/example_plot_ci_plot-1.png | Bin 0 -> 40652 bytes
man/figures/example_plot_graph-1.png | Bin 0 -> 97188 bytes
man/figures/img/zelig_models_thumb.png | Bin 0 -> 101040 bytes
man/figures/img/zelig_poster.jpeg | Bin 0 -> 45172 bytes
man/figures/zelig.png | Bin 0 -> 15074 bytes
man/fitted-Zelig-method.Rd | 1 -
man/friendship.Rd | 56 +-
man/from_zelig_model.Rd | 29 +
man/get_pvalue.Rd | 17 +
man/get_qi.Rd | 27 +
man/get_se.Rd | 17 +
man/homerun.Rd | 50 +-
man/is_length_not_1.Rd | 20 +
man/is_sims_present.Rd | 16 +
man/is_simsrange.Rd | 17 +
man/is_simsrange1.Rd | 17 +
man/is_simsx.Rd | 17 +
man/is_simsx1.Rd | 19 +
man/is_timeseries.Rd | 19 +
man/is_uninitializedField.Rd | 20 +
man/is_varying.Rd | 19 +
man/is_zelig.Rd | 16 +
man/is_zeligei.Rd | 20 +
man/mi.Rd | 18 +
man/model_lookup_df.Rd | 16 +
man/names-Zelig-method.Rd | 15 +
man/or_summary.Rd | 22 +
man/p_pull.Rd | 15 +
man/plot-Zelig-ANY-method.Rd | 1 -
man/predict-Zelig-method.Rd | 1 -
man/qi.plot.Rd | 3 +-
man/qi_slimmer.Rd | 51 +
man/reduce.Rd | 14 +-
man/relogit.Rd | 5 +-
man/residuals-Zelig-method.Rd | 15 +
man/rm_intercept.Rd | 17 +
man/rocplot.Rd | 3 +-
man/se_pull.Rd | 15 +
man/setfactor.Rd | 1 -
man/setval.Rd | 1 -
man/setx.Rd | 45 +-
man/setx1.Rd | 66 +
man/sim.Rd | 52 +-
man/simacf.Rd | 1 -
man/simulations.plot.Rd | 1 -
man/stat.Rd | 1 -
man/statlevel.Rd | 3 +-
man/statmat.Rd | 5 +-
man/strip_package_name.Rd | 15 +
man/summary-Zelig-method.Rd | 5 +-
man/summary.Arima.Rd | 1 -
man/table.levels.Rd | 3 +-
man/to_zelig.Rd | 28 +
man/to_zelig_mi.Rd | 41 +
man/transformer.Rd | 31 +
man/vcov-Zelig-method.Rd | 5 +-
man/vcov_gee.Rd | 14 +
man/vcov_rq.Rd | 14 +
man/voteincome.Rd | 54 +-
man/zelig.Rd | 72 +-
man/zeligACFplot.Rd | 1 -
man/zeligARMAbreakforecaster.Rd | 1 -
man/zeligARMAlongrun.Rd | 1 -
man/zeligARMAnextstep.Rd | 1 -
man/zeligArimaWrapper.Rd | 1 -
man/{zeligPlyrMutate.Rd => zelig_mutate.Rd} | 12 +-
man/zelig_qi_to_df.Rd | 91 ++
man/zelig_setx_to_df.Rd | 64 +
tests/testthat.R | 10 +-
tests/testthat/test-amelia.R | 23 +
tests/testthat/test-arima.R | 181 +++
tests/testthat/test-assertions.R | 61 +
tests/testthat/test-bayesdiagnostics.R | 32 +
tests/testthat/test-createJSON.R | 10 +
tests/testthat/test-exp.R | 19 +
tests/testthat/test-gamma.R | 23 +
tests/testthat/test-gammasurvey.R | 7 +
tests/testthat/test-interface.R | 111 ++
tests/testthat/test-ivreg.R | 69 +
tests/testthat/test-logit.R | 32 +-
tests/testthat/test-logitbayes.R | 7 +
tests/testthat/test-logitsurvey.R | 7 +
tests/testthat/test-lognom.R | 4 +-
tests/testthat/test-ls.R | 166 ++-
tests/testthat/test-matchit.R | 21 +
tests/testthat/test-negbin.R | 12 +-
tests/testthat/test-normal-gee.R | 51 +
tests/testthat/test-normal.R | 8 +
tests/testthat/test-normalbayes.R | 8 +
tests/testthat/test-normalsurvey.R | 15 +
tests/testthat/test-plots.R | 42 +
tests/testthat/test-poisson.R | 35 +-
tests/testthat/test-poissonbayes.R | 7 +
tests/testthat/test-poissonsurvey.R | 8 +
tests/testthat/test-probit.R | 29 +-
tests/testthat/test-probitbayes.R | 7 +
tests/testthat/test-probitsurvey.R | 7 +
tests/testthat/test-qislimmer.R | 33 +
tests/testthat/test-quantile.R | 44 +
tests/testthat/test-relogit.R | 108 ++
tests/testthat/test-survey.R | 56 +
tests/testthat/test-tobit.R | 22 +
tests/testthat/test-tobitbayes.R | 7 +
tests/testthat/test-utils.R | 84 ++
tests/testthat/test-weibull.R | 7 +
tests/testthat/test-weights.R | 35 +
tests/testthat/test-wrappers.R | 85 ++
tests/testthat/test-zelig.R | 326 +++++
272 files changed, 13519 insertions(+), 3503 deletions(-)
create mode 100644 NEWS.md
create mode 100644 R/assertions.R
create mode 100644 R/datasets.R
create mode 100644 R/interface.R
create mode 100644 R/model-ivreg.R
create mode 100644 README.md
create mode 100644 data/CigarettesSW.tab
create mode 100644 debian/README.source
delete mode 100644 demo/00Index
delete mode 100755 demo/demo-amelia.R
delete mode 100644 demo/demo-data-table.R
delete mode 100755 demo/demo-dplyr.R
delete mode 100755 demo/demo-exp.R
delete mode 100644 demo/demo-factor-bayes.R
delete mode 100644 demo/demo-feedback.R
delete mode 100755 demo/demo-gamma-gee.R
delete mode 100755 demo/demo-gamma.R
delete mode 100755 demo/demo-json.R
delete mode 100644 demo/demo-logit-bayes.R
delete mode 100755 demo/demo-logit-gee.R
delete mode 100755 demo/demo-logit.R
delete mode 100755 demo/demo-lognorm.R
delete mode 100755 demo/demo-ls.R
delete mode 100644 demo/demo-mlogit-bayes.R
delete mode 100755 demo/demo-negbinom.R
delete mode 100644 demo/demo-normal-bayes.R
delete mode 100755 demo/demo-normal-gee.R
delete mode 100755 demo/demo-normal.R
delete mode 100644 demo/demo-oprobit-bayes.R
delete mode 100644 demo/demo-poisson-bayes.R
delete mode 100755 demo/demo-poisson-gee.R
delete mode 100755 demo/demo-poisson.R
delete mode 100644 demo/demo-probit-bayes.R
delete mode 100755 demo/demo-probit-gee.R
delete mode 100755 demo/demo-probit.R
delete mode 100755 demo/demo-quantile.R
delete mode 100755 demo/demo-range.R
delete mode 100755 demo/demo-relogit.R
delete mode 100644 demo/demo-roc.R
delete mode 100755 demo/demo-scope.R
delete mode 100755 demo/demo-setx-2.R
delete mode 100644 demo/demo-setx-fn.R
delete mode 100755 demo/demo-setx.R
delete mode 100755 demo/demo-show.R
delete mode 100644 demo/demo-signif-stars.R
delete mode 100755 demo/demo-strata.R
delete mode 100755 demo/demo-tobit.R
delete mode 100644 demo/demo-tobitbayes.R
delete mode 100644 demo/demo-weibull.R
delete mode 100755 demo/demo-wrappers.R
delete mode 100755 demo/demo-zip.R
create mode 100644 inst/doc/quickstart.R
create mode 100644 inst/doc/quickstart.Rmd
create mode 100644 man/ATT.Rd
create mode 100644 man/CigarettesSW.Rd
create mode 100644 man/Zelig-ivreg-class.Rd
create mode 100644 man/ci_check.Rd
copy man/{coef-Zelig-method.Rd => coefficients-Zelig-method.Rd} (69%)
create mode 100644 man/combine_coef_se.Rd
create mode 100644 man/df.residual-Zelig-method.Rd
create mode 100644 man/expand_grid_setrange.Rd
create mode 100644 man/extract_setrange.Rd
create mode 100644 man/extract_setx.Rd
create mode 100644 man/factor_coef_combine.Rd
create mode 100644 man/figures/example_plot_ci_plot-1.png
create mode 100644 man/figures/example_plot_graph-1.png
create mode 100644 man/figures/img/zelig_models_thumb.png
create mode 100644 man/figures/img/zelig_poster.jpeg
create mode 100644 man/figures/zelig.png
create mode 100644 man/from_zelig_model.Rd
create mode 100644 man/get_pvalue.Rd
create mode 100644 man/get_qi.Rd
create mode 100644 man/get_se.Rd
create mode 100644 man/is_length_not_1.Rd
create mode 100644 man/is_sims_present.Rd
create mode 100644 man/is_simsrange.Rd
create mode 100644 man/is_simsrange1.Rd
create mode 100644 man/is_simsx.Rd
create mode 100644 man/is_simsx1.Rd
create mode 100644 man/is_timeseries.Rd
create mode 100644 man/is_uninitializedField.Rd
create mode 100644 man/is_varying.Rd
create mode 100644 man/is_zelig.Rd
create mode 100644 man/is_zeligei.Rd
create mode 100644 man/mi.Rd
create mode 100644 man/model_lookup_df.Rd
create mode 100644 man/names-Zelig-method.Rd
create mode 100644 man/or_summary.Rd
create mode 100644 man/p_pull.Rd
create mode 100644 man/qi_slimmer.Rd
create mode 100644 man/residuals-Zelig-method.Rd
create mode 100644 man/rm_intercept.Rd
create mode 100644 man/se_pull.Rd
create mode 100644 man/setx1.Rd
create mode 100644 man/strip_package_name.Rd
create mode 100644 man/to_zelig.Rd
create mode 100644 man/to_zelig_mi.Rd
create mode 100644 man/transformer.Rd
create mode 100644 man/vcov_gee.Rd
create mode 100644 man/vcov_rq.Rd
rename man/{zeligPlyrMutate.Rd => zelig_mutate.Rd} (52%)
create mode 100644 man/zelig_qi_to_df.Rd
create mode 100644 man/zelig_setx_to_df.Rd
create mode 100644 tests/testthat/test-amelia.R
create mode 100644 tests/testthat/test-arima.R
create mode 100644 tests/testthat/test-assertions.R
create mode 100644 tests/testthat/test-bayesdiagnostics.R
create mode 100644 tests/testthat/test-createJSON.R
create mode 100644 tests/testthat/test-exp.R
create mode 100644 tests/testthat/test-gamma.R
create mode 100644 tests/testthat/test-gammasurvey.R
create mode 100644 tests/testthat/test-interface.R
create mode 100644 tests/testthat/test-ivreg.R
create mode 100644 tests/testthat/test-logitbayes.R
create mode 100644 tests/testthat/test-logitsurvey.R
create mode 100644 tests/testthat/test-matchit.R
create mode 100644 tests/testthat/test-normal-gee.R
create mode 100644 tests/testthat/test-normal.R
create mode 100644 tests/testthat/test-normalbayes.R
create mode 100644 tests/testthat/test-normalsurvey.R
create mode 100644 tests/testthat/test-plots.R
create mode 100644 tests/testthat/test-poissonbayes.R
create mode 100644 tests/testthat/test-poissonsurvey.R
create mode 100644 tests/testthat/test-probitbayes.R
create mode 100644 tests/testthat/test-probitsurvey.R
create mode 100644 tests/testthat/test-qislimmer.R
create mode 100644 tests/testthat/test-quantile.R
create mode 100755 tests/testthat/test-relogit.R
create mode 100644 tests/testthat/test-survey.R
create mode 100644 tests/testthat/test-tobit.R
create mode 100644 tests/testthat/test-tobitbayes.R
create mode 100644 tests/testthat/test-utils.R
create mode 100644 tests/testthat/test-weibull.R
create mode 100644 tests/testthat/test-weights.R
create mode 100644 tests/testthat/test-wrappers.R
create mode 100644 tests/testthat/test-zelig.R
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