[r-cran-misctools] 01/01: Import Debian changes 0.6-16-1
Sébastien Villemot
sebastien at debian.org
Mon Oct 2 13:13:39 UTC 2017
This is an automated email from the git hooks/post-receive script.
sebastien pushed a commit to branch master
in repository r-cran-misctools.
commit b6107a784d7911e5b00c3fce57329171543228f8
Author: Andreas Tille <tille at debian.org>
Date: Mon Jun 23 09:24:05 2014 +0200
Import Debian changes 0.6-16-1
r-cran-misctools (0.6-16-1) unstable; urgency=low
* Initial release (Closes: #752502).
---
debian/README.test | 8 +++
debian/changelog | 5 ++
debian/compat | 1 +
debian/control | 23 ++++++++
debian/copyright | 30 ++++++++++
debian/docs | 3 +
debian/patches/series | 1 +
debian/patches/skip_ecdat_test.patch | 109 +++++++++++++++++++++++++++++++++++
debian/rules | 4 ++
debian/source/format | 1 +
debian/tests/control | 3 +
debian/tests/run-unit-test | 42 ++++++++++++++
debian/watch | 2 +
13 files changed, 232 insertions(+)
diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..55a9142
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+ sh run-unit-test
+
+in this directory.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..84f8684
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-misctools (0.6-16-1) unstable; urgency=low
+
+ * Initial release (Closes: #752502).
+
+ -- Andreas Tille <tille at debian.org> Mon, 23 Jun 2014 09:24:05 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..9f89f4d
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,23 @@
+Source: r-cran-misctools
+Section: gnu-r
+Priority: optional
+Testsuite: autopkgtest
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9.0),
+ cdbs,
+ r-base-dev
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-science/packages/R/trunk/packages/r-cran-misctools/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-science/packages/R/trunk/packages/r-cran-misctools/trunk/
+Homepage: http://cran.r-project.org/web/packages/miscTools/
+
+Package: r-cran-misctools
+Architecture: all
+Depends: ${misc:Depends},
+ ${R:Depends}
+Description: GNU R miscellaneous tools and utilities
+ This package contains miscellaneous small tools and utilities for
+ GNU R. These tools are needed for running the unit tests of some
+ other GNU R packages in Debian.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..2da7686
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: miscTools
+Upstream-Contact: Arne Henningsen <arne.henningsen at gmail.com>
+Source: http://cran.r-project.org/web/packages/miscTools/
+
+Files: *
+Copyright: 2008-2013 Ott Toomet, Arne Henningsen,
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..3adf0d6
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tests
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..cd58b7a
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+skip_ecdat_test.patch
diff --git a/debian/patches/skip_ecdat_test.patch b/debian/patches/skip_ecdat_test.patch
new file mode 100644
index 0000000..0058403
--- /dev/null
+++ b/debian/patches/skip_ecdat_test.patch
@@ -0,0 +1,109 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 23 Jun 2014 09:24:05 +0200
+Description: The colMediansTest needs data from the Ecdat package from
+ http://cran.r-project.org/web/packages/Ecdat/
+ that in turn needs another package to maintain these data. Since we
+ need to cut the chain of dependencies that are just packaged to run
+ sensible tests this test is left out. If you install these data
+ manually or perhaps use the inofficial and incomplete packaging at
+ svn://anonscm.debian.org/debian-science/packages/R/trunk/packages/r-cran-ecdat/trunk/
+ this patch can be droped for local tests
+
+--- miscTools.orig/tests/colMediansTest.R
++++ miscTools/tests/colMediansTest.R
+@@ -13,29 +13,3 @@
+ all.equal( cm1, rowMedians( t( m ) ) )
+ all.equal( rm1, colMedians( t( m ) ) )
+
+-
+-## data.frame
+-data( "Electricity", package = "Ecdat" )
+-Electricity <- Electricity[ 1:20, ]
+-
+-cm2 <- colMedians( Electricity )
+-print( cm2 )
+-
+-rm2 <- rowMedians( Electricity )
+-print( rm2 )
+-
+-all.equal( cm2, rowMedians( t( Electricity ) ) )
+-all.equal( rm2, colMedians( t( Electricity ) ) )
+-
+-# array (3 dimensions)
+-a3 <- array( 1:24, dim = c(4,3,2),
+- dimnames = list( c("a","b","c","d"), c("A","B","C"), c("x","y") ) )
+-colMedians( a3 )
+-all.equal( median( a3[ , "B", "y" ] ), colMedians( a3 )[ "B", "y" ] )
+-
+-# array (4 dimensions)
+-a4 <- array( 1:120, dim = c(5,4,3,2),
+- dimnames = list( c("a","b","c","d","e"), c("A","B","C","D"),
+- c("x","y","z"), c("Y","Z") ) )
+-colMedians( a4 )
+-all.equal( median( a4[ , "B", "x", "Z" ] ), colMedians( a4 )[ "B", "x", "Z" ] )
+--- miscTools.orig/tests/colMediansTest.Rout.save
++++ miscTools/tests/colMediansTest.Rout.save
+@@ -36,63 +36,3 @@
+ [1] TRUE
+ >
+ >
+-> ## data.frame
+-> data( "Electricity", package = "Ecdat" )
+-> Electricity <- Electricity[ 1:20, ]
+->
+-> cm2 <- colMedians( Electricity )
+-> print( cm2 )
+- cost q pl sl pk sk pf
+- 3.09655 422.50000 7794.10000 0.21090 69.26100 0.24415 25.95070
+- sf
+- 0.59860
+->
+-> rm2 <- rowMedians( Electricity )
+-> print( rm2 )
+- 1 2 3 4 5 6 7 8
+- 4.20985 12.05485 25.04895 14.64980 20.72935 18.42610 16.34295 7.24435
+- 9 10 11 12 13 14 15 16
+-11.32520 8.27460 14.17730 13.01815 22.80935 17.95680 14.06405 15.67750
+- 17 18 19 20
+-15.49855 12.44370 15.61920 21.87700
+->
+-> all.equal( cm2, rowMedians( t( Electricity ) ) )
+-[1] TRUE
+-> all.equal( rm2, colMedians( t( Electricity ) ) )
+-[1] TRUE
+->
+-> # array (3 dimensions)
+-> a3 <- array( 1:24, dim = c(4,3,2),
+-+ dimnames = list( c("a","b","c","d"), c("A","B","C"), c("x","y") ) )
+-> colMedians( a3 )
+- x y
+-A 2.5 14.5
+-B 6.5 18.5
+-C 10.5 22.5
+-> all.equal( median( a3[ , "B", "y" ] ), colMedians( a3 )[ "B", "y" ] )
+-[1] TRUE
+->
+-> # array (4 dimensions)
+-> a4 <- array( 1:120, dim = c(5,4,3,2),
+-+ dimnames = list( c("a","b","c","d","e"), c("A","B","C","D"),
+-+ c("x","y","z"), c("Y","Z") ) )
+-> colMedians( a4 )
+-, , Y
+-
+- x y z
+-A 3 23 43
+-B 8 28 48
+-C 13 33 53
+-D 18 38 58
+-
+-, , Z
+-
+- x y z
+-A 63 83 103
+-B 68 88 108
+-C 73 93 113
+-D 78 98 118
+-
+-> all.equal( median( a4[ , "B", "x", "Z" ] ), colMedians( a4 )[ "B", "x", "Z" ] )
+-[1] TRUE
+->
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..1cb1c9f
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..25377fc
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-runit
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..c3e6c15
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,42 @@
+#!/bin/sh -e
+
+pkg=r-cran-misctools
+
+# The saved result files do contain some differences in metadata and we also
+# need to ignore version differences of R
+filter() {
+ grep -v -e '^R version' \
+ -e '^Copyright (C)' \
+ -e '^R : Copyright 20' \
+ -e '^Version 2.0' \
+ -e '^Platform:' \
+ -e '^ISBN 3-900051-07-0' \
+ -e '^\[1\] "L*C' \
+ -e '^During startup - Warning messages:' \
+ -e '^[0-9]: Setting LC_' \
+ -e "'help.start()' for an* HTML browser interface to help." \
+ $1 | \
+ sed '/^> *proc\.time()$/,$d'
+}
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+gunzip *.gz
+for htest in `ls *.R | sed 's/\.R$//'` ; do
+ LC_ALL=C R --no-save < ${htest}.R 2>&1 | tee > ${htest}.Rout
+ filter ${htest}.Rout.save > ${htest}.Rout.save_
+ filter ${htest}.Rout > ${htest}.Rout_
+ diff -u --ignore-space-change ${htest}.Rout.save_ ${htest}.Rout_
+ if [ ! $? ] ; then
+ echo "Test ${htest} failed"
+ exit 1
+ else
+ echo "Test ${htest} passed"
+ fi
+done
+rm -f $ADTTMP/*
+
+exit 0
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..02c7f83
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/miscTools_([-\d.]*)\.tar\.gz
--
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