[dolfin] 02/02: Updated version 2017.2.0 from 'upstream/2017.2.0'

Drew Parsons dparsons at moszumanska.debian.org
Sat Oct 7 07:28:40 UTC 2017


This is an automated email from the git hooks/post-receive script.

dparsons pushed a commit to branch experimental
in repository dolfin.

commit 2a28e096da7d1a96a33187a0ee98f40424a9fe69
Merge: db99c2b 9d382e9
Author: Drew Parsons <dparsons at debian.org>
Date:   Sat Oct 7 15:23:26 2017 +0800

    Updated version 2017.2.0 from 'upstream/2017.2.0'
    
    with Debian dir e2d278bfbc2158fd554466dbf06147212804789d

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 dolfin/swig/modules/mesh/module.i                  |   234 -
 dolfin/swig/multistage/docstrings.i                |   217 -
 dolfin/swig/nls/docstrings.i                       |   692 -
 dolfin/swig/parameter/docstrings.i                 |   857 -
 dolfin/swig/parameter/pre.i                        |    16 +-
 dolfin/swig/plot/docstrings.i                      |   139 -
 dolfin/swig/plot/pre.i                             |    40 -
 dolfin/swig/refinement/docstrings.i                |   498 -
 dolfin/swig/shared_ptr_classes.i                   |     8 -
 python/CMakeLists.txt                              |    43 +
 python/README.rst                                  |    33 +
 python/cmake/FindMPI4PY.cmake                      |    36 +
 python/doc/source/api.rst                          |    11 +
 python/doc/source/conf.py                          |   176 +
 python/doc/source/index.rst                        |     9 +
 python/dolfin/__init__.py                          |   223 +
 python/dolfin/common/__init__.py                   |     0
 .../dolfin/common/plotting.py                      |   228 +-
 python/dolfin/common/timer.py                      |    86 +
 python/dolfin/fem/__init__.py                      |     0
 python/dolfin/fem/adaptivesolving.py               |   227 +
 python/dolfin/fem/assembling.py                    |   359 +
 python/dolfin/fem/dirichletbc.py                   |   131 +
 python/dolfin/fem/errorcontrolgenerator.py         |   100 +
 python/dolfin/fem/form.py                          |    86 +
 python/dolfin/fem/formmanipulations.py             |   128 +
 python/dolfin/fem/interpolation.py                 |    65 +
 python/dolfin/fem/norms.py                         |   279 +
 python/dolfin/fem/projection.py                    |   163 +
 python/dolfin/fem/solving.py                       |   499 +
 python/dolfin/function/__init__.py                 |     0
 python/dolfin/function/argument.py                 |   127 +
 python/dolfin/function/constant.py                 |   126 +
 python/dolfin/function/expression.py               |   357 +
 python/dolfin/function/function.py                 |   523 +
 python/dolfin/function/functionspace.py            |   235 +
 python/dolfin/function/jit.py                      |   154 +
 python/dolfin/function/specialfunctions.py         |   246 +
 python/dolfin/io/__init__.py                       |    39 +
 python/dolfin/jit/__init__.py                      |    36 +
 python/dolfin/jit/jit.py                           |    90 +
 python/dolfin/jit/pybind11jit.py                   |    78 +
 python/dolfin/la/__init__.py                       |    83 +
 python/dolfin/mesh/__init__.py                     |    53 +
 python/dolfin/mesh/ale.py                          |   186 +
 python/dolfin/mesh/meshfunction.py                 |    75 +
 python/dolfin/mesh/meshvaluecollection.py          |    18 +
 python/dolfin/mesh/subdomain.py                    |   106 +
 {site-packages => python}/dolfin/mesh/svgtools.py  |    14 +-
 python/dolfin/mesh/ufl_util.py                     |    28 +
 python/dolfin/multistage/__init__.py               |    17 +
 python/dolfin/multistage/factorize.py              |   147 +
 python/dolfin/multistage/multistagescheme.py       |   809 +
 python/dolfin/multistage/multistagesolvers.py      |    62 +
 python/dolfin/multistage/rushlarsenschemes.py      |   603 +
 python/dolfin/parameter/__init__.py                |    81 +
 python/dolfin_utils/meshconvert/__init__.py        |     0
 python/dolfin_utils/meshconvert/abaqus.py          |   483 +
 python/dolfin_utils/meshconvert/meshconvert.py     |  1443 +
 python/dolfin_utils/meshconvert/xml_writer.py      |   155 +
 python/dolfin_utils/test/__init__.py               |     6 +
 .../dolfin_utils/test/fixtures.py                  |    47 +-
 python/dolfin_utils/test/paths.py                  |    91 +
 .../dolfin_utils/test/skips.py                     |    30 +-
 python/dolfin_utils/test/tests.py                  |    73 +
 python/setup.py                                    |    90 +
 python/src/adaptivity.cpp                          |   117 +
 python/src/ale.cpp                                 |    58 +
 python/src/casters.h                               |    52 +
 python/src/common.cpp                              |   167 +
 python/src/dolfin.cpp                              |   135 +
 python/src/fem.cpp                                 |   566 +
 python/src/function.cpp                            |   457 +
 python/src/generation.cpp                          |   107 +
 python/src/geometry.cpp                            |   139 +
 python/src/graph.cpp                               |    46 +
 python/src/io.cpp                                  |   454 +
 python/src/la.cpp                                  |   978 +
 python/src/log.cpp                                 |    63 +
 dolfin/fem/assemble_local.h => python/src/math.cpp |    29 +-
 python/src/mesh.cpp                                |   540 +
 python/src/mpi_casters.h                           |   156 +
 python/src/multistage.cpp                          |    69 +
 python/src/nls.cpp                                 |   219 +
 python/src/parameter.cpp                           |   224 +
 python/src/petsc_casters.h                         |   116 +
 .../src/refinement.cpp                             |    34 +-
 release.conf                                       |    25 +
 shippable.yml                                      |    22 +
 site-packages/dolfin/__init__.py                   |     1 +
 site-packages/dolfin/common/plotting.py            |   151 +-
 .../dolfin/compilemodules/compilemodule.py         |     8 +-
 .../dolfin/compilemodules/swigimportinfo.py        |  1596 -
 site-packages/dolfin/deprecation.py                |     6 +
 site-packages/dolfin/fem/form.py                   |     3 +-
 site-packages/dolfin/functions/expression.py       |     2 +-
 site-packages/dolfin/mesh/svgtools.py              |     2 +-
 .../documentation/extractdocumentation.py          |     4 +-
 site-packages/dolfin_utils/test/fixtures.py        |     8 +-
 site-packages/dolfin_utils/test/skips.py           |    11 +
 test/codingstyle/test_coding_style.py.in           |     3 +-
 test/regression/test.py                            |     3 +-
 test/unit/cpp/CMakeLists.txt                       |     3 -
 test/unit/cpp/function/Projection.h                |  9892 ----
 test/unit/cpp/la/Vector.cpp                        |    22 +-
 test/unit/cpp/la/forms/ReactionDiffusion.h         |  4168 --
 test/unit/cpp/la/forms/ReactionDiffusionAction.h   |  3657 --
 test/unit/cpp/mesh/Mesh.cpp                        |    11 +
 test/unit/cpp/mesh/MeshColoring.cpp                |     4 -
 test/unit/python/common/test_timer.py              |    38 +-
 test/unit/python/fem/test_assembler.py             |    18 +-
 test/unit/python/fem/test_dirichlet_bc.py          |    67 +-
 test/unit/python/fem/test_dofmap.py                |   135 +-
 test/unit/python/fem/test_finite_element.py        |   131 +-
 test/unit/python/fem/test_form.py                  |     8 +-
 .../fem/test_interior_facet_integral_sides.py      |     2 +-
 test/unit/python/fem/test_manifolds.py             |    60 +-
 .../python/fem/test_symbolic_geometry_assembly.py  |     8 +-
 test/unit/python/fem/test_system_assembler.py      |    18 +-
 test/unit/python/function/test_constant.py         |    14 +-
 test/unit/python/function/test_expression.py       |    85 +-
 test/unit/python/function/test_function.py         |     9 +-
 .../python/function/test_lagrange_interpolator.py  |    21 +-
 .../function/test_nonmatching_interpolation.py     |     4 +-
 .../python/geometry/test_collision_detection.py    |    40 +-
 test/unit/python/geometry/test_coordinates.py      |     6 +-
 test/unit/python/geometry/test_intersection.py     |    35 +-
 .../geometry/test_intersection_triangulation.py    |    38 +-
 test/unit/python/geometry/test_point.py            |     7 +-
 test/unit/python/io/test_HDF5_attribute.py         |    39 +-
 test/unit/python/io/test_XDMF.py                   |   204 +-
 test/unit/python/io/test_XML_table.py              |     3 +-
 test/unit/python/jit/test_jit.py                   |   146 +-
 test/unit/python/la/test_la_basic.py               |   106 +-
 test/unit/python/la/test_matrix.py                 |    23 +-
 test/unit/python/la/test_petsc.py                  |     3 +-
 test/unit/python/la/test_slepc_solver.py           |    76 +-
 test/unit/python/la/test_sparsity_pattern.py       |   167 +
 test/unit/python/la/test_tensor_layout.py          |    14 +-
 test/unit/python/la/test_vector.py                 |   170 +-
 test/unit/python/mesh/test_cell.py                 |    91 +-
 .../unit/python/mesh/test_manifold_point_search.py |     4 +-
 test/unit/python/mesh/test_mesh.py                 |   225 +-
 test/unit/python/mesh/test_mesh_editor.py          |    12 +-
 test/unit/python/mesh/test_mesh_function.py        |    19 +-
 test/unit/python/mesh/test_mesh_iterator.py        |     8 +
 .../python/mesh/test_multi_mesh_integration.py     |     3 +-
 .../mesh/test_periodic_boundary_computation.py     |    18 +-
 test/unit/python/mesh/test_sub_domain.py           |   200 +-
 test/unit/python/mesh/test_sub_mesh.py             |     1 +
 test/unit/python/multimesh/test_multimesh.py       |    15 +-
 test/unit/python/multistage/test_RK_solver.py      |     8 -
 .../multistage/test_point_integral_solver.py       |     2 +-
 test/unit/python/nls/test_PETScSNES_solver.py      |    16 +-
 .../test_solve_result_against_reference.py         |    30 +-
 utils/pylit/pylit.py                               |    11 +-
 1503 files changed, 21654 insertions(+), 1021829 deletions(-)

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