[hypre] branch experimental updated (0ea2ba0 -> 08c4e6c)
Drew Parsons
dparsons at moszumanska.debian.org
Wed Oct 18 11:15:22 UTC 2017
This is an automated email from the git hooks/post-receive script.
dparsons pushed a change to branch experimental
in repository hypre.
from 0ea2ba0 upload 2.11.2-1 to experimental
adds 01388c2 Standards-Version: 4.1.1
adds e753361 debian/control: Priority: optional
adds 702326b upload 2.11.2-2 to unstable
new b0efb9c New upstream version 2.12.1
new 5321750 Updated version 2.12.1 from 'upstream/2.12.1'
new 1328791 update debian dir for new upstream version
new 08c4e6c refresh debian/patches
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
AUTOTEST/README.txt | 27 +-
AUTOTEST/autotest.sh | 283 --
AUTOTEST/{basictest.sh => basic.sh} | 0
AUTOTEST/check-double.filters | 9 +-
AUTOTEST/check-int.filters | 8 +
AUTOTEST/check-mpi.filters | 11 +-
AUTOTEST/{cmaketest.sh => cmake.sh} | 2 +-
AUTOTEST/cronfile | 29 -
AUTOTEST/machine-mac.sh | 12 +-
AUTOTEST/{machine-rzmerl.sh => machine-rztopaz.sh} | 20 +-
AUTOTEST/{machine-rzzeus.sh => machine-syrah.sh} | 20 +-
AUTOTEST/machine-tux.sh | 102 +-
AUTOTEST/machine-vulcan.sh | 12 +-
AUTOTEST/testdist.sh | 174 --
AUTOTEST/testsrc.sh | 89 -
CHANGELOG | 14 +
debian/changelog | 17 +
debian/control | 8 +-
debian/patches/complex.patch | 2 +-
debian/patches/configure.patch | 4 +-
debian/patches/install.patch | 8 +-
debian/patches/shlibs-interlink-sublibs.patch | 10 +-
debian/patches/superlu_internal.patch | 32 +-
debian/patches/test.patch | 2 +-
debian/rules | 2 +-
docs/HYPRE_ref_manual.pdf | Bin 874193 -> 874961 bytes
docs/HYPRE_usr_manual.pdf | Bin 653348 -> 653348 bytes
src/CMakeLists.txt | 16 +-
src/FEI_mv/fei-hypre/HYPRE_LSC_aux.cxx | 6 +-
src/FEI_mv/fei-hypre/Makefile | 4 +-
src/IJ_mv/IJVector_parcsr.c | 5 +-
src/Makefile | 1 +
src/blas/hypre_blas.h | 4 +-
src/config/HYPRE_config.h.cmake.in | 6 +
src/config/HYPRE_config.h.in | 9 +
src/config/Makefile.config.in | 34 +-
src/config/config.guess | 20 +-
src/config/configure.in | 428 ++-
src/configure | 787 +++++-
src/distributed_ls/Euclid/Euclid_dh.c | 17 +-
src/distributed_ls/Euclid/ExternalRows_dh.c | 4 +-
src/distributed_ls/Euclid/Factor_dh.c | 10 +-
src/distributed_ls/Euclid/Mat_dh.c | 8 +-
src/distributed_ls/Euclid/TimeLog_dh.c | 4 +-
src/distributed_ls/Euclid/_hypre_Euclid.h | 12 +-
src/distributed_ls/Euclid/blas_dh.c | 4 +-
src/distributed_ls/Euclid/globalObjects.c | 3 +
src/distributed_ls/Euclid/macros_dh.h | 4 +
src/distributed_ls/Euclid/mat_dh_private.c | 8 +-
src/distributed_ls/ParaSails/ConjGrad.c | 2 +-
src/distributed_ls/ParaSails/DiagScale.c | 4 +-
src/distributed_ls/ParaSails/FGmres.c | 2 +-
src/distributed_ls/ParaSails/LoadBal.c | 8 +-
src/distributed_ls/ParaSails/Matrix.c | 12 +-
src/distributed_ls/ParaSails/ParaSails.c | 18 +-
src/distributed_ls/ParaSails/driver.c | 12 +-
src/distributed_ls/ParaSails/lapdriver.c | 4 +-
src/distributed_ls/pilut/comm.c | 6 +-
src/distributed_ls/pilut/parilut.c | 4 +-
src/distributed_ls/pilut/trifactor.c | 8 +-
src/examples/README_files/ex12f.f.html | 2 +-
src/examples/ex12f.f | 2 +-
src/krylov/bicgstab.c | 3 +-
src/krylov/gmres.c | 1 -
src/krylov/lobpcg.c | 2 +-
src/krylov/pcg.c | 4 +-
src/lapack/dbdsqr.c | 2 +-
src/lapack/dgesvd.c | 1 -
src/lapack/dlabad.c | 2 +-
src/lapack/dlae2.c | 2 -
src/lapack/dlaev2.c | 2 -
src/lapack/dlanst.c | 2 -
src/lapack/dlartg.c | 11 +-
src/lapack/dlas2.c | 2 -
src/lapack/dlasq1.c | 3 -
src/lapack/dlasq2.c | 3 -
src/lapack/dlasq3.c | 2 -
src/lapack/dlasq4.c | 3 -
src/lapack/dlasv2.c | 2 +-
src/lapack/dsteqr.c | 2 +-
src/lapack/dsterf.c | 2 +-
src/lapack/dsyev.c | 2 -
src/lapack/hypre_lapack.h | 6 +
src/multivector/backup.c | 4 +-
src/multivector/csr_matmultivec.c | 2 +-
src/parcsr_ls/F90_HYPRE_parcsr_amg.c | 106 +-
src/parcsr_ls/HYPRE_parcsr_amg.c | 48 +-
src/parcsr_ls/HYPRE_parcsr_ls.h | 50 +
src/parcsr_ls/Makefile | 2 +
src/parcsr_ls/_hypre_parcsr_ls.h | 44 +-
src/parcsr_ls/ams.c | 42 +-
src/parcsr_ls/gen_redcs_mat.c | 14 +-
src/parcsr_ls/par_add_cycle.c | 226 +-
src/parcsr_ls/par_amg.c | 107 +
src/parcsr_ls/par_amg.h | 18 +-
src/parcsr_ls/par_amg_setup.c | 275 +-
src/parcsr_ls/par_cheby.c | 338 +++
src/parcsr_ls/par_coarsen.c | 3 +-
src/parcsr_ls/par_cr.c | 18 +-
src/parcsr_ls/par_cycle.c | 34 +-
src/parcsr_ls/par_gsmg.c | 2 +-
src/parcsr_ls/par_jacobi_interp.c | 2 +-
src/parcsr_ls/par_relax.c | 26 +-
src/parcsr_ls/par_relax_more.c | 53 +-
src/parcsr_ls/par_stats.c | 84 +-
src/parcsr_ls/par_strength.c | 1 +
src/parcsr_ls/par_vardifconv.c | 9 +-
.../{par_vardifconv.c => par_vardifconv_rs.c} | 309 ++-
src/parcsr_mv/_hypre_parcsr_mv.h | 6 +
src/parcsr_mv/par_csr_communication.c | 2 +-
src/parcsr_mv/par_csr_matrix.c | 8 +
src/parcsr_mv/par_csr_matvec.c | 47 +-
src/parcsr_mv/par_vector.c | 6 +
src/seq_mv/Makefile | 8 +-
.../dsuperlu_include.h => seq_mv/Makefile.empty} | 0
src/seq_mv/Makefile.nvcc | 4 +
src/seq_mv/csr_matrix.c | 45 +-
src/seq_mv/csr_matvec.c | 85 +-
src/seq_mv/gpukernels.cu | 243 ++
src/seq_mv/gpukernels.h | 9 +
src/seq_mv/headers | 1 +
src/seq_mv/seq_mv.h | 42 +-
src/seq_mv/vector.c | 161 +-
src/sstruct_ls/HYPRE_sstruct_int.c | 8 +-
src/sstruct_ls/fac_amr_fcoarsen.c | 48 +-
src/sstruct_ls/fac_amr_rap.c | 7 +-
src/sstruct_ls/fac_cf_coarsen.c | 36 +-
src/sstruct_ls/fac_interp2.c | 37 +-
src/sstruct_ls/fac_restrict2.c | 25 +-
src/sstruct_ls/fac_setup2.c | 11 +-
src/sstruct_ls/fac_zero_stencilcoef.c | 20 +-
src/sstruct_ls/maxwell_PNedelec.c | 350 +--
src/sstruct_ls/maxwell_TV_setup.c | 9 +-
src/sstruct_ls/maxwell_grad.c | 30 +-
src/sstruct_ls/maxwell_physbdy.c | 12 +-
src/sstruct_ls/maxwell_semi_interp.c | 435 +--
src/sstruct_ls/node_relax.c | 36 +-
src/sstruct_ls/sstruct_sharedDOFComm.c | 14 +-
src/sstruct_mv/_hypre_sstruct_mv.h | 3 +
src/sstruct_mv/headers | 3 +
src/sstruct_mv/sstruct_matrix.c | 44 +-
src/sstruct_mv/sstruct_vector.c | 8 +-
src/struct_ls/HYPRE_struct_int.c | 9 +-
src/struct_ls/HYPRE_struct_pcg.c | 6 +-
src/struct_ls/_hypre_struct_ls.h | 2 -
src/struct_ls/cyclic_reduction.c | 65 +-
src/struct_ls/pfmg.c | 11 +-
src/struct_ls/pfmg2_setup_rap.c | 92 +-
src/struct_ls/pfmg3_setup_rap.c | 191 +-
src/struct_ls/pfmg_setup.c | 274 +-
src/struct_ls/pfmg_setup_interp.c | 70 +-
src/struct_ls/pfmg_setup_rap5.c | 15 +-
src/struct_ls/pfmg_setup_rap7.c | 10 +-
src/struct_ls/pfmg_solve.c | 2 +-
src/struct_ls/point_relax.c | 62 +-
src/struct_ls/red_black_constantcoef_gs.c | 229 +-
src/struct_ls/red_black_gs.c | 125 +-
src/struct_ls/red_black_gs.h | 223 ++
src/struct_ls/semi_interp.c | 8 +-
src/struct_ls/semi_restrict.c | 6 +-
src/struct_ls/semi_setup_rap.c | 19 +-
src/struct_ls/smg.c | 7 +-
src/struct_ls/smg2_setup_rap.c | 72 +-
src/struct_ls/smg3_setup_rap.c | 108 +-
src/struct_ls/smg_axpy.c | 5 +-
src/struct_ls/smg_relax.c | 3 +-
src/struct_ls/smg_residual.c | 9 +-
src/struct_ls/smg_setup.c | 5 +-
src/struct_ls/smg_setup_interp.c | 4 +-
src/struct_ls/sparse_msg2_setup_rap.c | 45 +-
src/struct_ls/sparse_msg3_setup_rap.c | 61 +-
src/struct_ls/sparse_msg_filter.c | 49 +-
src/struct_ls/sparse_msg_interp.c | 10 +-
src/struct_ls/sparse_msg_restrict.c | 8 +-
src/struct_ls/sparse_msg_setup.c | 36 +-
src/struct_mv/_hypre_struct_mv.h | 2919 ++++++++++++++++++--
src/struct_mv/assumed_part.c | 14 +-
src/struct_mv/box.h | 410 +--
src/struct_mv/box_manager.c | 16 +-
src/struct_mv/boxloop.h | 384 +++
src/struct_mv/boxloop_cuda.h | 717 +++++
src/struct_mv/boxloop_kokkos.h | 542 ++++
src/struct_mv/boxloop_raja.h | 845 ++++++
src/struct_mv/communication_info.c | 13 +-
src/struct_mv/headers | 50 +-
src/struct_mv/protos.h | 2 +-
src/struct_mv/struct_axpy.c | 16 +-
src/struct_mv/struct_communication.c | 343 ++-
src/struct_mv/struct_communication.h | 5 +
src/struct_mv/struct_copy.c | 10 +-
src/struct_mv/struct_grid.c | 6 +-
src/struct_mv/struct_innerprod.c | 42 +-
src/struct_mv/struct_io.c | 46 +-
src/struct_mv/struct_matrix.c | 40 +-
src/struct_mv/struct_matvec.c | 64 +-
src/struct_mv/struct_scale.c | 3 +-
src/struct_mv/struct_vector.c | 80 +-
src/test/Makefile | 6 +
src/test/TEST_examples/complex.jobs | 2 +-
src/test/TEST_examples/maxdim.jobs | 4 +-
src/test/TEST_ij/smoother.jobs | 19 +
src/test/TEST_ij/smoother.saved | 20 +
src/test/TEST_ij/smoother.sh | 5 +
src/test/TEST_ij/solvers.jobs | 3 +
src/test/TEST_ij/solvers.saved | 12 +
src/test/TEST_ij/solvers.sh | 3 +
.../solvers_ij.jobs} | 64 +-
src/test/TEST_longdouble/solvers_ij.saved | 145 +
.../solvers.sh => TEST_longdouble/solvers_ij.sh} | 0
src/test/TEST_longdouble/solvers_struct.jobs | 63 +
src/test/TEST_longdouble/solvers_struct.saved | 120 +
.../solvers_struct.sh} | 0
.../solvers.jobs => TEST_single/solvers_ij.jobs} | 64 +-
src/test/TEST_single/solvers_ij.saved | 145 +
.../solvers.sh => TEST_single/solvers_ij.sh} | 7 +-
src/test/TEST_single/solvers_struct.jobs | 63 +
src/test/TEST_single/solvers_struct.saved | 120 +
.../solvers.sh => TEST_single/solvers_struct.sh} | 4 +-
src/test/TEST_sstruct/solvers.saved | 80 +-
src/test/TEST_struct/solvers.saved | 120 +-
src/test/ams_driver.c | 4 +-
src/test/for_maxwell.c | 2 +-
src/test/ij.c | 892 +++---
src/test/maxwell_unscaled.c | 5 +-
src/test/runtest.sh | 2 +-
src/test/sstruct.c | 12 +-
src/test/struct.c | 68 +-
src/test/struct_migrate.c | 24 +-
src/test/struct_newboxloop.c | 1956 +++++++++++++
src/test/zboxloop.c | 30 +-
src/utilities/HYPRE_utilities.h | 36 +-
src/utilities/Makefile | 4 +-
src/utilities/_hypre_utilities.h | 631 ++++-
src/utilities/amg_linklist.h | 3 +-
src/utilities/caliper_instrumentation.h | 1 +
src/utilities/exchange_data.h | 9 +-
src/utilities/general.h | 11 +-
.../ml_superlu_lapack.h => utilities/gpgpu.h} | 21 +-
src/utilities/gpuErrorCheck.c | 111 +
src/utilities/gpuErrorCheck.h | 153 +
src/utilities/gpuMem.c | 513 ++++
src/utilities/gpuMem.h | 104 +
src/utilities/headers | 23 +-
src/utilities/hypre_error.h | 3 +-
src/utilities/hypre_memory.c | 244 +-
src/utilities/hypre_memory.h | 185 ++
src/utilities/hypre_nvtx.h | 72 +
src/utilities/hypre_printf.c | 46 +-
src/utilities/mpistubs.c | 2 +-
src/utilities/mpistubs.h | 43 +-
src/utilities/protos.h | 221 ++
src/utilities/random.c | 53 +-
src/utilities/threading.h | 1 +
src/utilities/timing.c | 4 +-
src/utilities/timing.h | 3 +-
255 files changed, 16679 insertions(+), 4344 deletions(-)
delete mode 100755 AUTOTEST/autotest.sh
rename AUTOTEST/{basictest.sh => basic.sh} (100%)
rename AUTOTEST/{cmaketest.sh => cmake.sh} (98%)
delete mode 100644 AUTOTEST/cronfile
rename AUTOTEST/{machine-rzmerl.sh => machine-rztopaz.sh} (73%)
rename AUTOTEST/{machine-rzzeus.sh => machine-syrah.sh} (74%)
delete mode 100755 AUTOTEST/testdist.sh
delete mode 100755 AUTOTEST/testsrc.sh
create mode 100644 src/parcsr_ls/par_cheby.c
copy src/parcsr_ls/{par_vardifconv.c => par_vardifconv_rs.c} (62%)
copy src/{FEI_mv/fei-hypre/dsuperlu_include.h => seq_mv/Makefile.empty} (100%)
create mode 100644 src/seq_mv/Makefile.nvcc
create mode 100644 src/seq_mv/gpukernels.cu
create mode 100644 src/seq_mv/gpukernels.h
create mode 100644 src/struct_mv/boxloop.h
create mode 100644 src/struct_mv/boxloop_cuda.h
create mode 100644 src/struct_mv/boxloop_kokkos.h
create mode 100644 src/struct_mv/boxloop_raja.h
copy src/test/{TEST_ij/solvers.jobs => TEST_longdouble/solvers_ij.jobs} (50%)
create mode 100644 src/test/TEST_longdouble/solvers_ij.saved
copy src/test/{TEST_ij/solvers.sh => TEST_longdouble/solvers_ij.sh} (100%)
create mode 100644 src/test/TEST_longdouble/solvers_struct.jobs
create mode 100644 src/test/TEST_longdouble/solvers_struct.saved
copy src/test/{TEST_struct/solvers.sh => TEST_longdouble/solvers_struct.sh} (100%)
copy src/test/{TEST_ij/solvers.jobs => TEST_single/solvers_ij.jobs} (50%)
create mode 100644 src/test/TEST_single/solvers_ij.saved
copy src/test/{TEST_ij/solvers.sh => TEST_single/solvers_ij.sh} (92%)
create mode 100755 src/test/TEST_single/solvers_struct.jobs
create mode 100644 src/test/TEST_single/solvers_struct.saved
copy src/test/{TEST_struct/solvers.sh => TEST_single/solvers_struct.sh} (97%)
create mode 100644 src/test/struct_newboxloop.c
copy src/{FEI_mv/ml/src/Include/ml_superlu_lapack.h => utilities/gpgpu.h} (72%)
create mode 100644 src/utilities/gpuErrorCheck.c
create mode 100644 src/utilities/gpuErrorCheck.h
create mode 100644 src/utilities/gpuMem.c
create mode 100644 src/utilities/gpuMem.h
create mode 100644 src/utilities/hypre_nvtx.h
create mode 100644 src/utilities/protos.h
--
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