[r-cran-spatstat] branch master updated (ea786e8 -> 276c5ca)
Andreas Tille
tille at debian.org
Fri Oct 20 15:24:44 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-spatstat.
from ea786e8 Moved packaging from SVN to Git
new 5042cc8 Standards-Version: 4.1.1
new 382db98 Secure URI in watch file
adds 983a7e7 New upstream version 1.53-2
new d843bd4 Updated version 1.53-2 from 'upstream/1.53-2'
new 67029f9 New upstream version
new 276c5ca New Build-Depends: r-cran-spatstat.data
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 16 +-
MD5 | 293 ++++++--------------
NAMESPACE | 19 +-
NEWS | 239 ++++++++++++++++
R/First.R | 5 +-
R/Kinhom.R | 28 +-
R/Math.linim.R | 26 +-
R/as.im.R | 14 +-
R/density.lpp.R | 58 +++-
R/evalcovar.R | 29 +-
R/ewcdf.R | 10 +-
R/leverage.R | 77 +++---
R/lindirichlet.R | 197 +++++++------
R/linim.R | 460 +++++++++++++++++++------------
R/linnet.R | 15 +-
R/linnetsurgery.R | 6 +-
R/lintess.R | 13 +-
R/lixellate.R | 9 +-
R/logistic.R | 15 +-
R/lohboot.R | 70 ++++-
R/lpp.R | 5 +
R/lppm.R | 11 +-
R/measures.R | 50 +++-
R/mpl.R | 13 +-
R/newformula.R | 8 +-
R/nnfromvertex.R | 129 +++++++++
R/plot.anylist.R | 14 +-
R/plot.im.R | 116 ++++++--
R/plot.ppp.R | 27 +-
R/ppm.R | 6 +-
R/profilepl.R | 8 +-
R/psp.R | 22 +-
R/rhohat.R | 29 +-
R/solist.R | 4 +-
R/symbolmap.R | 11 +-
R/sysdata.rda | Bin 97776 -> 97772 bytes
R/update.ppm.R | 5 +-
R/window.R | 34 ++-
R/wingeom.R | 8 +-
build/vignette.rds | Bin 362 -> 370 bytes
data/Kovesi.rda | Bin 13820 -> 0 bytes
data/amacrine.rda | Bin 3215 -> 0 bytes
data/anemones.rda | Bin 1079 -> 0 bytes
data/ants.rda | Bin 2053 -> 0 bytes
data/austates.rda | Bin 40084 -> 0 bytes
data/bdspots.rda | Bin 25860 -> 0 bytes
data/bei.rda | Bin 182512 -> 0 bytes
data/betacells.rda | Bin 1893 -> 0 bytes
data/bramblecanes.rda | Bin 3753 -> 0 bytes
data/bronzefilter.rda | Bin 3808 -> 0 bytes
data/cells.rda | Bin 576 -> 0 bytes
data/chicago.rda | Bin 526172 -> 0 bytes
data/chorley.rda | Bin 6464 -> 0 bytes
data/clmfires.rda | Bin 581332 -> 0 bytes
data/copper.rda | Bin 5011 -> 0 bytes
data/datalist | 55 ----
data/demohyper.rda | Bin 27364 -> 0 bytes
data/demopat.rda | Bin 1343 -> 0 bytes
data/dendrite.rda | Bin 23600 -> 0 bytes
data/finpines.rda | Bin 2757 -> 0 bytes
data/flu.rda | Bin 81300 -> 0 bytes
data/ganglia.rda | Bin 1228 -> 0 bytes
data/gordon.rda | Bin 3028 -> 0 bytes
data/gorillas.rda | Bin 103956 -> 0 bytes
data/hamster.rda | Bin 2169 -> 0 bytes
data/heather.rda | Bin 52826 -> 0 bytes
data/humberside.rda | Bin 1737 -> 0 bytes
data/hyytiala.rda | Bin 2552 -> 0 bytes
data/japanesepines.rda | Bin 621 -> 0 bytes
data/lansing.rda | Bin 7115 -> 0 bytes
data/letterR.rda | Bin 609 -> 0 bytes
data/longleaf.rda | Bin 3582 -> 0 bytes
data/mucosa.rda | Bin 13424 -> 0 bytes
data/murchison.rda | Bin 53236 -> 0 bytes
data/nbfires.rda | Bin 167324 -> 0 bytes
data/nztrees.rda | Bin 543 -> 0 bytes
data/osteo.rda | Bin 3946 -> 0 bytes
data/paracou.rda | Bin 4870 -> 0 bytes
data/ponderosa.rda | Bin 1789 -> 0 bytes
data/pyramidal.rda | Bin 6158 -> 0 bytes
data/redwood.rda | Bin 609 -> 0 bytes
data/redwood3.rda | Bin 802 -> 0 bytes
data/redwoodfull.rda | Bin 2874 -> 0 bytes
data/residualspaper.rda | Bin 527947 -> 0 bytes
data/shapley.rda | Bin 37584 -> 0 bytes
data/simba.rda | Bin 6463 -> 0 bytes
data/simdat.rda | Bin 1368 -> 0 bytes
data/simplenet.rda | Bin 1289 -> 0 bytes
data/spiders.rda | Bin 8872 -> 0 bytes
data/sporophores.rda | Bin 6331 -> 0 bytes
data/spruces.rda | Bin 1200 -> 0 bytes
data/swedishpines.rda | Bin 496 -> 0 bytes
data/urkiola.rda | Bin 4792 -> 0 bytes
data/vesicles.rda | Bin 6544 -> 0 bytes
data/waka.rda | Bin 4362 -> 0 bytes
data/waterstriders.rda | Bin 1055 -> 0 bytes
debian/changelog | 9 +-
debian/control | 5 +-
debian/watch | 2 +-
inst/doc/Nickname.txt | 1 +
inst/doc/datasets.R | 130 ++++-----
inst/doc/datasets.Rnw | 22 +-
inst/doc/datasets.pdf | Bin 3756413 -> 3757222 bytes
inst/doc/getstart.pdf | Bin 121981 -> 122077 bytes
inst/doc/packagesizes.txt | 3 +
inst/doc/replicated.pdf | Bin 396777 -> 398208 bytes
inst/doc/shapefiles.pdf | Bin 79258 -> 79276 bytes
inst/doc/updates.R | 12 +-
inst/doc/updates.Rnw | 132 ++++++++-
inst/doc/updates.pdf | Bin 177672 -> 184427 bytes
inst/rawdata/amacrine/amacrine.txt | 295 --------------------
inst/rawdata/finpines/finpines.txt | 127 ---------
inst/rawdata/gorillas/vegetation.asc | 155 -----------
inst/rawdata/osteo/osteo36.txt | 30 --
inst/rawdata/sandholes/sandholes.jpg | Bin 95101 -> 0 bytes
inst/rawdata/vesicles/activezone.txt | 10 -
inst/rawdata/vesicles/mitochondria.txt | 24 --
inst/rawdata/vesicles/presynapse.txt | 70 -----
inst/rawdata/vesicles/vesicles.csv | 38 ---
inst/rawdata/vesicles/vesicles.txt | 38 ---
inst/rawdata/vesicles/vesiclesimage.tif | Bin 106299 -> 0 bytes
inst/rawdata/vesicles/vesiclesmask.tif | Bin 2136 -> 0 bytes
inst/rawdata/vesicles/vesicleswindow.csv | 93 -------
inst/rawdata/vesicles/vesicleswindow.txt | 93 -------
man/Kovesi.Rd | 88 ------
man/Replace.linim.Rd | 65 +++++
man/amacrine.Rd | 43 ---
man/anemones.Rd | 70 -----
man/ants.Rd | 169 ------------
man/austates.Rd | 36 ---
man/bdspots.Rd | 87 ------
man/bei.Rd | 71 -----
man/betacells.Rd | 101 -------
man/bramblecanes.Rd | 66 -----
man/bronzefilter.Rd | 55 ----
man/cells.Rd | 39 ---
man/chicago.Rd | 66 -----
man/chorley.Rd | 104 -------
man/clmfires.Rd | 102 -------
man/copper.Rd | 119 --------
man/copyExampleFiles.Rd | 54 ----
man/demohyper.Rd | 42 ---
man/demopat.Rd | 26 --
man/dendrite.Rd | 46 ----
man/finpines.Rd | 67 -----
man/fitin.Rd | 13 +-
man/flu.Rd | 108 --------
man/ganglia.Rd | 71 -----
man/gordon.Rd | 35 ---
man/gorillas.Rd | 151 ----------
man/hamster.Rd | 48 ----
man/heather.Rd | 109 --------
man/humberside.Rd | 86 ------
man/hyytiala.Rd | 41 ---
man/identify.psp.Rd | 14 +-
man/ippm.Rd | 1 +
man/is.marked.Rd | 6 +-
man/is.marked.ppm.Rd | 6 +-
man/is.marked.ppp.Rd | 6 +-
man/is.multitype.Rd | 10 +-
man/is.multitype.ppm.Rd | 6 +-
man/is.multitype.ppp.Rd | 10 +-
man/japanesepines.Rd | 39 ---
man/lansing.Rd | 106 -------
man/letterR.Rd | 20 --
man/linim.Rd | 13 +-
man/linnet.Rd | 2 +-
man/lintess.Rd | 9 +-
man/lohboot.Rd | 89 ++++--
man/longleaf.Rd | 54 ----
man/lpp.Rd | 4 +-
man/mucosa.Rd | 54 ----
man/murchison.Rd | 108 --------
man/nbfires.Rd | 225 ---------------
man/nnfromvertex.Rd | 56 ++++
man/nztrees.Rd | 48 ----
man/osteo.Rd | 145 ----------
man/paracou.Rd | 54 ----
man/plot.im.Rd | 30 +-
man/plot.leverage.ppm.Rd | 12 +-
man/plot.linim.Rd | 21 +-
man/plot.lpp.Rd | 2 +-
man/plot.msr.Rd | 31 ++-
man/plot.ppp.Rd | 1 +
man/plot.psp.Rd | 1 +
man/plot.symbolmap.Rd | 19 +-
man/ponderosa.Rd | 61 ----
man/ppm.ppp.Rd | 28 +-
man/ppp.object.Rd | 24 +-
man/profilepl.Rd | 3 +-
man/pyramidal.Rd | 45 ---
man/redwood.Rd | 70 -----
man/redwoodfull.Rd | 108 --------
man/residualspaper.Rd | 93 -------
man/rhohat.Rd | 13 +
man/shapley.Rd | 98 -------
man/simba.Rd | 37 ---
man/simdat.Rd | 30 --
man/simplenet.Rd | 18 --
man/spatstat-internal.Rd | 29 +-
man/spatstat-package.Rd | 104 +++----
man/spiders.Rd | 66 -----
man/sporophores.Rd | 45 ---
man/spruces.Rd | 62 -----
man/swedishpines.Rd | 52 ----
man/text.ppp.Rd | 67 +++++
man/tile.lengths.Rd | 40 +++
man/urkiola.Rd | 34 ---
man/vesicles.Rd | 91 ------
man/waka.Rd | 44 ---
man/waterstriders.Rd | 59 ----
src/init.c | 1 +
src/linvknndist.c | 2 +-
src/proto.h | 3 +-
vignettes/datasets.Rnw | 22 +-
vignettes/updates.Rnw | 132 ++++++++-
216 files changed, 2371 insertions(+), 5933 deletions(-)
create mode 100644 R/nnfromvertex.R
delete mode 100644 data/Kovesi.rda
delete mode 100644 data/amacrine.rda
delete mode 100644 data/anemones.rda
delete mode 100644 data/ants.rda
delete mode 100644 data/austates.rda
delete mode 100644 data/bdspots.rda
delete mode 100644 data/bei.rda
delete mode 100644 data/betacells.rda
delete mode 100644 data/bramblecanes.rda
delete mode 100644 data/bronzefilter.rda
delete mode 100644 data/cells.rda
delete mode 100644 data/chicago.rda
delete mode 100644 data/chorley.rda
delete mode 100644 data/clmfires.rda
delete mode 100644 data/copper.rda
delete mode 100644 data/datalist
delete mode 100644 data/demohyper.rda
delete mode 100644 data/demopat.rda
delete mode 100644 data/dendrite.rda
delete mode 100644 data/finpines.rda
delete mode 100644 data/flu.rda
delete mode 100644 data/ganglia.rda
delete mode 100644 data/gordon.rda
delete mode 100644 data/gorillas.rda
delete mode 100644 data/hamster.rda
delete mode 100644 data/heather.rda
delete mode 100644 data/humberside.rda
delete mode 100644 data/hyytiala.rda
delete mode 100644 data/japanesepines.rda
delete mode 100644 data/lansing.rda
delete mode 100644 data/letterR.rda
delete mode 100644 data/longleaf.rda
delete mode 100644 data/mucosa.rda
delete mode 100644 data/murchison.rda
delete mode 100644 data/nbfires.rda
delete mode 100644 data/nztrees.rda
delete mode 100644 data/osteo.rda
delete mode 100644 data/paracou.rda
delete mode 100644 data/ponderosa.rda
delete mode 100644 data/pyramidal.rda
delete mode 100644 data/redwood.rda
delete mode 100644 data/redwood3.rda
delete mode 100644 data/redwoodfull.rda
delete mode 100644 data/residualspaper.rda
delete mode 100644 data/shapley.rda
delete mode 100644 data/simba.rda
delete mode 100644 data/simdat.rda
delete mode 100644 data/simplenet.rda
delete mode 100644 data/spiders.rda
delete mode 100644 data/sporophores.rda
delete mode 100644 data/spruces.rda
delete mode 100644 data/swedishpines.rda
delete mode 100644 data/urkiola.rda
delete mode 100644 data/vesicles.rda
delete mode 100644 data/waka.rda
delete mode 100644 data/waterstriders.rda
create mode 100644 inst/doc/Nickname.txt
delete mode 100755 inst/rawdata/amacrine/amacrine.txt
delete mode 100755 inst/rawdata/finpines/finpines.txt
delete mode 100644 inst/rawdata/gorillas/vegetation.asc
delete mode 100644 inst/rawdata/osteo/osteo36.txt
delete mode 100644 inst/rawdata/sandholes/sandholes.jpg
delete mode 100644 inst/rawdata/vesicles/activezone.txt
delete mode 100644 inst/rawdata/vesicles/mitochondria.txt
delete mode 100644 inst/rawdata/vesicles/presynapse.txt
delete mode 100644 inst/rawdata/vesicles/vesicles.csv
delete mode 100644 inst/rawdata/vesicles/vesicles.txt
delete mode 100644 inst/rawdata/vesicles/vesiclesimage.tif
delete mode 100644 inst/rawdata/vesicles/vesiclesmask.tif
delete mode 100644 inst/rawdata/vesicles/vesicleswindow.csv
delete mode 100644 inst/rawdata/vesicles/vesicleswindow.txt
delete mode 100644 man/Kovesi.Rd
create mode 100644 man/Replace.linim.Rd
delete mode 100644 man/amacrine.Rd
delete mode 100644 man/anemones.Rd
delete mode 100644 man/ants.Rd
delete mode 100644 man/austates.Rd
delete mode 100644 man/bdspots.Rd
delete mode 100644 man/bei.Rd
delete mode 100644 man/betacells.Rd
delete mode 100644 man/bramblecanes.Rd
delete mode 100644 man/bronzefilter.Rd
delete mode 100644 man/cells.Rd
delete mode 100644 man/chicago.Rd
delete mode 100644 man/chorley.Rd
delete mode 100644 man/clmfires.Rd
delete mode 100644 man/copper.Rd
delete mode 100644 man/copyExampleFiles.Rd
delete mode 100644 man/demohyper.Rd
delete mode 100644 man/demopat.Rd
delete mode 100644 man/dendrite.Rd
delete mode 100644 man/finpines.Rd
delete mode 100644 man/flu.Rd
delete mode 100644 man/ganglia.Rd
delete mode 100644 man/gordon.Rd
delete mode 100644 man/gorillas.Rd
delete mode 100644 man/hamster.Rd
delete mode 100644 man/heather.Rd
delete mode 100644 man/humberside.Rd
delete mode 100644 man/hyytiala.Rd
delete mode 100644 man/japanesepines.Rd
delete mode 100644 man/lansing.Rd
delete mode 100644 man/letterR.Rd
delete mode 100644 man/longleaf.Rd
delete mode 100644 man/mucosa.Rd
delete mode 100644 man/murchison.Rd
delete mode 100644 man/nbfires.Rd
create mode 100644 man/nnfromvertex.Rd
delete mode 100644 man/nztrees.Rd
delete mode 100644 man/osteo.Rd
delete mode 100644 man/paracou.Rd
delete mode 100644 man/ponderosa.Rd
delete mode 100644 man/pyramidal.Rd
delete mode 100644 man/redwood.Rd
delete mode 100644 man/redwoodfull.Rd
delete mode 100644 man/residualspaper.Rd
delete mode 100644 man/shapley.Rd
delete mode 100644 man/simba.Rd
delete mode 100644 man/simdat.Rd
delete mode 100644 man/simplenet.Rd
delete mode 100644 man/spiders.Rd
delete mode 100644 man/sporophores.Rd
delete mode 100644 man/spruces.Rd
delete mode 100644 man/swedishpines.Rd
create mode 100644 man/text.ppp.Rd
create mode 100644 man/tile.lengths.Rd
delete mode 100644 man/urkiola.Rd
delete mode 100644 man/vesicles.Rd
delete mode 100644 man/waka.Rd
delete mode 100644 man/waterstriders.Rd
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