[r-cran-eco] 18/30: Import Upstream version 3.1-6
Andreas Tille
tille at debian.org
Thu Sep 7 07:20:59 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-eco.
commit 811ec62a5f8faf90c18bc15828b8626c7cbca1be
Author: Andreas Tille <tille at debian.org>
Date: Thu Sep 7 08:59:31 2017 +0200
Import Upstream version 3.1-6
---
ChangeLog | 13 +
DESCRIPTION | 14 +-
MD5 | 80 ++
R/onAttach.R | 7 +-
R/summary.eco.R | 14 +-
R/summary.ecoNP.R | 8 +-
data/census.txt | 1041 -------------------------
data/census.txt.gz | Bin 0 -> 14008 bytes
data/forgnlit30.txt | 49 --
data/forgnlit30.txt.gz | Bin 0 -> 1125 bytes
data/forgnlit30c.txt | 1977 -----------------------------------------------
data/forgnlit30c.txt.gz | Bin 0 -> 44527 bytes
data/housep88.txt | 425 ----------
data/housep88.txt.gz | Bin 0 -> 9116 bytes
data/reg.txt | 276 -------
data/reg.txt.gz | Bin 0 -> 4863 bytes
data/wallace.txt | 1010 ------------------------
data/wallace.txt.gz | Bin 0 -> 4733 bytes
inst/CITATION | 21 +
man/eco.Rd | 6 +-
man/ecoML.Rd | 6 +-
man/ecoNP.Rd | 6 +-
man/summary.eco.Rd | 6 +-
man/summary.ecoML.Rd | 7 +-
man/summary.ecoNP.Rd | 6 +-
src/gibbsEM.c | 16 +-
src/gibbsZBase.c | 2 +-
src/subroutines.c | 2 +-
28 files changed, 159 insertions(+), 4833 deletions(-)
diff --git a/ChangeLog b/ChangeLog
new file mode 100644
index 0000000..8221c54
--- /dev/null
+++ b/ChangeLog
@@ -0,0 +1,13 @@
+3.1-5 05.29.12 minor fixes
+3.1-4 07.12.09 minor fixes
+3.1-3 07.05.09 minor fixes
+3.1-2 01.29.09 minor documentation fixes
+3.1-1 06.27.07 some minor improvements; final version for JSS publication
+3.0-2 01.11.07 made it comparible with the Windows; a bug fix in summary.ecoML()
+3.0-1 12.27.06 a major revision; added ML estimation, calculation of fraction of missing information, stable release for R-2.4.1
+2.2-2 09.23.06 changed due to updates in R
+2.2-1 09.28.05 nonparametric model with contextual effects added
+2.1-1 07.06.05 a major revision; added bounds and prediction; added/updated other functionalities
+1.1-1 06.15.05 add the Metropolis algorithm to sample W
+1.0-1 12.21.04 first official version; submitted to CRAN
+0.9-1 09.07.04 first beta version
diff --git a/DESCRIPTION b/DESCRIPTION
index bb381b8..8bf0e00 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,21 +1,21 @@
Package: eco
-Version: 3.1-4
-Date: 2009-07-12
+Version: 3.1-6
+Date: 2012-5-29
Title: R Package for Ecological Inference in 2x2 Tables
Author: Kosuke Imai <kimai at princeton.edu>, Ying Lu <yl46 at nyu.edu>,
Aaron Strauss <abstraus at Princeton.EDU>.
Maintainer: Ying Lu <yl46 at nyu.edu>
-Depends: R (>= 2.0), MASS
+Depends: R (>= 2.0), MASS, utils
Description: eco is a publicly available R package that implements the
Bayesian and likelihood methods proposed in Imai, Lu, and
Strauss (2008) for ecological inference in $2 \times 2$ tables
as well as the method of bounds introduced by Duncan and Davis
- (1953). The package fits both parametric and nonparametric
+ (1953). The package fits both parametric and nonparametric
models using either the Expectation-Maximization algorithms
(for likelihood models) or the Markov chain Monte Carlo
algorithms (for Bayesian models). For all models, the
individual-level data can be directly incorporated into the
- estimation whenever such data are available. Along with
+ estimation whenever such data are available. Along with
in-sample and out-of-sample predictions, the package also
provides a functionality which allows one to quantify the
effect of data aggregation on parameter estimation and
@@ -24,6 +24,6 @@ LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
URL: http://imai.princeton.edu/software/eco.html
-Packaged: 2009-07-13 01:26:09 UTC; ying
+Packaged: 2012-05-29 15:44:23 UTC; kimai
Repository: CRAN
-Date/Publication: 2009-07-18 15:41:13
+Date/Publication: 2012-06-12 06:36:54
diff --git a/MD5 b/MD5
new file mode 100644
index 0000000..e82b8dc
--- /dev/null
+++ b/MD5
@@ -0,0 +1,80 @@
+ee746d907dcb122ee1a005cbce81a960 *ChangeLog
+c25c507b25252083536ee6c844af2138 *DESCRIPTION
+848dcabf0d80bb915d0ff13dedb91cda *NAMESPACE
+a12c92eb0ddc56e282ad6ff3a990bff1 *R/Qfun.R
+19b54ec2f8a821715be3881948ab4dfd *R/checkdata.R
+b739dfc6d215a18af2bbeed867ce8dd2 *R/coef.eco.R
+4e0835221af546dde07cc910439fd29c *R/coef.ecoNP.R
+0380a6adab657ee90e7645b9c61eb3ae *R/eco.R
+633e104923566a9d6845f2608b61bc95 *R/ecoBD.R
+ec74fb120755d764a8c07ef534831b50 *R/ecoCV.R
+71b51118a534a8ce46b72edd9605f521 *R/ecoNP.R
+d571c7dcb6ffae9532bff0b392edd3a1 *R/ecoRC.R
+0db3ebf78571d9a96dd70d57a340422f *R/emeco.R
+6c644c7e6e990443dcf79b10722e8180 *R/eminfo.R
+8b136280b6d870259d087afe9fb8f5c6 *R/logit.R
+74be3d5191777b2fd500f602a998e000 *R/onAttach.R
+d0c94137a617835be0f5511e270d080a *R/predict.eco.R
+435be8169cf6b3f72b393dbe0c9a958e *R/predict.ecoNP.R
+aceb01f7d2bc7917dbb13d8928a3caf1 *R/predict.ecoNPX.R
+a5a193d0e7084dae925a60ebac7a7b46 *R/predict.ecoX.R
+ec3456b70b939df343420cc1d3f6aa14 *R/print.eco.R
+076356bd800db18b690efb01af2cc8ba *R/print.ecoBD.R
+14bcd129eb23ba5341fbc7e49d53c121 *R/print.ecoML.R
+800b946b39952f29af0798d8f1c1775e *R/print.summary.eco.R
+6dc5abe1a4b05d43977cad038929717a *R/print.summary.ecoML.R
+5e9703d464de9e121513aa88f3b41248 *R/print.summary.ecoNP.R
+053e97b9a3e773e0f451394ba26e1f52 *R/print.summary.predict.eco.R
+4197ad73e0cda8e322624b103181f24d *R/summary.eco.R
+1d215cc25dc2d076dfcc855e3b9ac032 *R/summary.ecoML.R
+9179509565faf9d20126af8a8ce15472 *R/summary.ecoNP.R
+b16954c324c6f0cda61d97a97e58c626 *R/summary.predict.eco.R
+c3b40e569a714b410c08a60c3881db57 *R/varcov.R
+4999fe2d5c10c20ef7953c519ea4b864 *data/census.txt.gz
+bab848bf01c09ff663551d74a091aacb *data/forgnlit30.txt.gz
+72a68f958f3d09b6bfbc57ac2999c31c *data/forgnlit30c.txt.gz
+7232655f0724246d816712ee30d5dea6 *data/housep88.txt.gz
+997a61242cc887b3b0e7167b850dc5fd *data/reg.txt.gz
+2329fbd925f12169a0b92cbb3bc8863d *data/wallace.txt.gz
+6762185d8bce0126591ba4a32c5dd39c *inst/CITATION
+be65253c79c3c12e92bf8920cc4e0120 *man/Qfun.Rd
+1802c44a46ce275ca7b7abb6a1949f4a *man/census.Rd
+2269b412a9c78268fc369d2f4e1b0ff4 *man/eco.Rd
+7e6dafe9e3314e015cde0d90da87e588 *man/ecoBD.Rd
+39e9e975b02847dcd58b5c57642e1563 *man/ecoML.Rd
+cc71a124f83dbe59c6f8fdd3df422dad *man/ecoNP.Rd
+b8c243e39c2a1d88d8dbc8b383364757 *man/forgnlit30.Rd
+b0cad00cf2f9b995d3e91dc5d36402ba *man/forgnlit30c.Rd
+5d902872834f60a3eba7eedaf0c3302d *man/housep88.Rd
+b8778c408c3306d8db16c0119feae617 *man/predict.eco.Rd
+d5f9f735fe021fd05b92dccb88d5af0a *man/predict.ecoNP.Rd
+a3f368fa54b74a5cc31dc0a6faa3299b *man/reg.Rd
+5431ec8ee0443d4021be3258aa12d1a2 *man/summary.eco.Rd
+b215876547c3a61756194fa08e56808f *man/summary.ecoML.Rd
+9834d2eaed0611713fc2105add724329 *man/summary.ecoNP.Rd
+13a44404b6affc8437796b1b3d104a0f *man/wallace.Rd
+f009e46fcf131d28ea4ead122961b7bd *src/Makevars
+61d0335fbb10bbacb4a0c133d1eda041 *src/bayes.c
+de17d4ca6e1eadef448d31e5bb278be9 *src/bayes.h
+6d1c67e5b20580efdd22e3ccb4d6b930 *src/fintegrate.c
+6547650d65505a06b847b26c2f0dfcdf *src/fintegrate.h
+e4f4765b9dbde486d170894f9084daf5 *src/gibbsBase.c
+82a00f75e3c796b5b66e24a5b3fc1198 *src/gibbsBase2C.c
+cd03908bee96f1538c50e907fcd5eb7b *src/gibbsBaseRC.c
+33f0950281de3da321bfe80cac8e00c9 *src/gibbsDP.c
+83ea2ab7d26ed9f7a82d18922d4eb24f *src/gibbsEM.c
+7782c2cdfec2269ecddc0ddc56d23b87 *src/gibbsXBase.c
+1b532d75ab6bdb2439666141b3d81c6f *src/gibbsXDP.c
+a156b108399967722872d26c50897f8a *src/gibbsZBase.c
+c24852e22728b2f506134dd8221e522f *src/macros.h
+787249c325d6acec9d8630ceddb7b923 *src/preBaseX.c
+b0dd2bd8e7ed47ae7d5327055b8b92ca *src/preDP.c
+eda210e63b5ba5c09d54ab8f69d999b7 *src/preDPX.c
+fcb06c890afff62b4b0e2513a64c5a61 *src/rand.c
+9a7e8d0aaa99088d05813349cf590f07 *src/rand.h
+fc17ca85ae3c58d8730cfec91fdc06dc *src/sample.c
+d32b15707595f439df5fbaabee5b85c3 *src/sample.h
+74c4d37cfec10a5bfa9983f84d70ca2f *src/subroutines.c
+80400b50a31ad1b68a2c5b594edf0bf8 *src/subroutines.h
+fb277bf399a12283c95c33f0b990ead8 *src/vector.c
+9f7d40b1458a95830ba736c18ab76522 *src/vector.h
diff --git a/R/onAttach.R b/R/onAttach.R
index 64fee23..106c323 100644
--- a/R/onAttach.R
+++ b/R/onAttach.R
@@ -1,7 +1,6 @@
".onAttach" <- function(lib, pkg) {
mylib <- dirname(system.file(package = pkg))
- title <- packageDescription(pkg, lib = mylib)$Title
- ver <- packageDescription(pkg, lib = mylib)$Version
- cat(paste(pkg, ": ", title, "\nVersion: ", ver, "\n", sep=""))
+ title <- packageDescription(pkg, lib.loc = mylib)$Title
+ ver <- packageDescription(pkg, lib.loc = mylib)$Version
+ packageStartupMessage(paste(pkg, ": ", title, "\nVersion: ", ver, "\n", sep=""))
}
-
diff --git a/R/summary.eco.R b/R/summary.eco.R
index 1ebeb7d..90aeca7 100644
--- a/R/summary.eco.R
+++ b/R/summary.eco.R
@@ -16,8 +16,8 @@ summary.eco <- function(object, CI = c(2.5, 97.5), param = TRUE,
agg.table <-agg.wtable <-NULL
N<-rep(1, length(object$X))
- W1.agg.mean <- object$W[,1,]%*% (object$X*N/sum(object$X*N))
- W2.agg.mean <- object$W[,2,]%*% ((1-object$X)*N/sum((1-object$X)*N))
+ W1.agg.mean <- as.vector(object$W[,1,]%*% (object$X*N/sum(object$X*N)))
+ W2.agg.mean <- as.vector(object$W[,2,]%*% ((1-object$X)*N/sum((1-object$X)*N)))
agg.table <- rbind(cbind(mean(W1.agg.mean), sd(W1.agg.mean),
quantile(W1.agg.mean, min(CI)/100),
@@ -32,11 +32,11 @@ summary.eco <- function(object, CI = c(2.5, 97.5), param = TRUE,
if (!is.null(object$N)) {
N <- object$N
- W1.agg.wmean <- object$W[,1,] %*% (object$X*N/sum(object$X*N))
- W2.agg.wmean <- object$W[,2,] %*% ((1-object$X)*N/sum((1-object$X)*N))
- agg.wtable <- rbind(cbind(mean(W1.agg.wmean), sd(W1.agg.wmean),
- quantile(W1.agg.wmean, min(CI)/100),
- quantile(W1.agg.wmean, max(CI)/100)),
+ W1.agg.wmean <- as.vector(object$W[,1,] %*% (object$X*N/sum(object$X*N)))
+ W2.agg.wmean <- as.vector(object$W[,2,] %*% ((1-object$X)*N/sum((1-object$X)*N)))
+ agg.wtable <- rbind(cbind(mean(W1.agg.wmean), sd(W1.agg.wmean),
+ quantile(W1.agg.wmean, min(CI)/100),
+ quantile(W1.agg.wmean, max(CI)/100)),
cbind(mean(W2.agg.wmean), sd(W2.agg.wmean),
quantile(W2.agg.wmean, min(CI)/100),
quantile(W2.agg.wmean, max(CI)/100)))
diff --git a/R/summary.ecoNP.R b/R/summary.ecoNP.R
index 5c77d06..90d962d 100644
--- a/R/summary.ecoNP.R
+++ b/R/summary.ecoNP.R
@@ -13,8 +13,8 @@ summary.ecoNP <- function(object, CI=c(2.5, 97.5), param=FALSE, units=FALSE, sub
agg.table <-agg.wtable <-NULL
N<-rep(1, length(object$X))
- W1.agg.mean <- object$W[,1,]%*% (object$X*N/sum(object$X*N))
- W2.agg.mean <- object$W[,2,]%*% ((1-object$X)*N/sum((1-object$X)*N))
+ W1.agg.mean <- as.vector(object$W[,1,]%*% (object$X*N/sum(object$X*N)))
+ W2.agg.mean <- as.vector(object$W[,2,]%*% ((1-object$X)*N/sum((1-object$X)*N)))
agg.table <- rbind(cbind(mean(W1.agg.mean), sd(W1.agg.mean),
quantile(W1.agg.mean, min(CI)/100),
@@ -29,8 +29,8 @@ summary.ecoNP <- function(object, CI=c(2.5, 97.5), param=FALSE, units=FALSE, sub
if (!is.null(object$N)) {
N <- object$N
- W1.agg.wmean <- object$W[,1,] %*% (object$X*N/sum(object$X*N))
- W2.agg.wmean <- object$W[,2,] %*% ((1-object$X)*N/sum((1-object$X)*N))
+ W1.agg.wmean <- as.vector(object$W[,1,] %*% (object$X*N/sum(object$X*N)))
+ W2.agg.wmean <- as.vector(object$W[,2,] %*% ((1-object$X)*N/sum((1-object$X)*N)))
agg.wtable <- rbind(cbind(mean(W1.agg.wmean), sd(W1.agg.wmean),
quantile(W1.agg.wmean, min(CI)/100),
quantile(W1.agg.wmean, max(CI)/100)),
diff --git a/data/census.txt b/data/census.txt
deleted file mode 100644
index 1207217..0000000
--- a/data/census.txt
+++ /dev/null
@@ -1,1041 +0,0 @@
-Y X N W1 W2
-0.7372 0.5905 14497 0.6061 0.9262
-0.8518 0.2803 13263 0.646 0.932
-0.6833 0.6147 23193 0.5374 0.916
-0.8323 0.3533 16030 0.7078 0.9003
-0.8529 0.0585 14649 0.6161 0.8676
-0.6412 0.8279 21242 0.574 0.9647
-0.7407 0.5213 20618 0.5785 0.9172
-0.8366 0.2803 28537 0.6885 0.8942
-0.767 0.5082 25580 0.608 0.9313
-0.8011 0.1293 13924 0.6211 0.8279
-0.8212 0.2048 16309 0.653 0.8645
-0.6967 0.6109 12695 0.5598 0.9115
-0.7303 0.5513 22088 0.5787 0.9164
-0.8628 0.1275 14452 0.6308 0.8967
-0.8265 0.0542 9164 0.5936 0.8399
-0.7738 0.2223 18122 0.5492 0.8379
-0.7925 0.3867 17782 0.6247 0.8984
-0.7538 0.4603 15285 0.5975 0.8871
-0.7963 0.363 11529 0.5885 0.9148
-0.7913 0.2624 22830 0.6087 0.8563
-0.8267 0.3106 16489 0.6658 0.8993
-0.7934 0.263 15138 0.5901 0.866
-0.6144 0.8081 40389 0.5286 0.976
-0.7807 0.4734 20305 0.6074 0.9365
-0.8126 0.3024 13274 0.6522 0.8822
-0.8371 0.184 27995 0.6943 0.8693
-0.8345 0.1145 11133 0.6314 0.8607
-0.8104 0.1048 13220 0.6332 0.8312
-0.7971 0.1642 17927 0.5751 0.8407
-0.5676 0.8566 16268 0.5002 0.9704
-0.6269 0.7792 19983 0.5431 0.9227
-0.7477 0.4678 14306 0.5862 0.8895
-0.8149 0.291 22857 0.6554 0.8804
-0.8116 0.0952 22956 0.6482 0.8288
-0.8664 0.4205 174724 0.7458 0.9539
-0.8584 0.1776 11968 0.6226 0.9093
-0.8272 0.2357 21832 0.6413 0.8846
-0.7578 0.3262 15324 0.6279 0.8207
-0.7032 0.5794 23629 0.5257 0.9478
-0.7123 0.3861 18981 0.4527 0.8756
-0.5491 0.8739 23040 0.4894 0.9628
-0.6893 0.8353 18755 0.6368 0.9556
-0.7698 0.4024 34607 0.6003 0.8839
-0.562 0.7699 28845 0.4477 0.9442
-0.8555 0.4382 63959 0.7108 0.9684
-0.6888 0.5749 18840 0.5159 0.9227
-0.7518 0.6843 63652 0.6457 0.9817
-0.8468 0.2515 24621 0.6652 0.9078
-0.6464 0.7817 22403 0.5636 0.9427
-0.6518 0.5172 17805 0.4099 0.911
-0.7444 0.4599 22004 0.5545 0.906
-0.8281 0.2322 16792 0.6986 0.8672
-0.6315 0.7607 18481 0.5424 0.9145
-0.8552 0.1821 14523 0.7259 0.884
-0.7966 0.2922 19093 0.6078 0.8745
-0.5685 0.8022 20787 0.4666 0.982
-0.7626 0.4731 26777 0.624 0.887
-0.7641 0.3608 21781 0.5399 0.8906
-0.7606 0.4047 34799 0.5841 0.8805
-0.8377 0.1951 25780 0.6962 0.872
-0.7689 0.4204 10163 0.589 0.8993
-0.6345 0.8064 24815 0.5552 0.9644
-0.911 0.2591 11866 0.7625 0.9629
-0.8668 0.5366 18110 0.7839 0.9628
-0.8619 0.3161 10045 0.6844 0.944
-0.8228 0.3487 6785 0.6095 0.9371
-0.6932 0.8067 16691 0.6601 0.8314
-0.8846 0.3042 16784 0.7391 0.9482
-0.8431 0.3095 9215 0.6473 0.9309
-0.8262 0.4411 16580 0.6659 0.9527
-0.844 0.3692 15765 0.7856 0.8782
-0.9075 0.0531 19911 0.7483 0.9164
-0.8959 0.0927 17007 0.7502 0.9108
-0.8133 0.8471 17194 0.7887 0.9498
-0.8511 0.4415 10208 0.7464 0.9339
-0.8942 0.3574 8830 0.743 0.9783
-0.6898 0.7962 11585 0.6212 0.9576
-0.8068 0.5353 15609 0.6723 0.9617
-0.9039 0.1903 16328 0.7909 0.9305
-0.9259 0.187 21353 0.8428 0.945
-0.9151 0.1073 6340 0.7809 0.9313
-0.8581 0.4869 20002 0.7361 0.9738
-0.9141 0.1373 10633 0.8103 0.9307
-0.8984 0.2031 11792 0.7445 0.9376
-0.9189 0.056 17568 0.7713 0.9277
-0.8625 0.2736 16954 0.776 0.8951
-0.8076 0.7142 39918 0.7413 0.9734
-0.8552 0.5264 9985 0.7574 0.9638
-0.8562 0.7843 18208 0.8291 0.9547
-0.8138 0.674 11030 0.7382 0.97
-0.8238 0.4197 9735 0.662 0.9409
-0.8448 0.4056 19982 0.6896 0.9507
-0.8348 0.3763 14424 0.6588 0.941
-0.7861 0.4602 22686 0.6669 0.8877
-0.8006 0.6327 14707 0.7234 0.9335
-0.843 0.341 13251 0.631 0.9527
-0.8652 0.5541 15419 0.7856 0.9642
-0.8839 0.1016 6406 0.745 0.8996
-0.8105 0.7838 25841 0.7659 0.9723
-0.9037 0.0767 8644 0.7541 0.9162
-0.938 0.1765 9305 0.8234 0.9625
-0.8906 0.0787 16909 0.7911 0.8991
-0.8888 0.3233 9917 0.7723 0.9444
-0.8953 0.412 68630 0.7876 0.9707
-0.7962 0.6837 16656 0.7335 0.9319
-0.8824 0.1197 11699 0.7407 0.9016
-0.9426 0.1122 38881 0.8221 0.9579
-0.914 0.1355 11422 0.7319 0.9426
-0.7948 0.4321 21282 0.5936 0.9478
-0.9266 0.0769 20369 0.7518 0.9411
-0.8267 0.5829 14471 0.7419 0.9452
-0.8958 0.0704 18151 0.7212 0.909
-0.9042 0.2204 26199 0.7164 0.9573
-0.9315 0.1303 100440 0.7765 0.9547
-0.8944 0.1623 36441 0.6987 0.9323
-0.8259 0.557 25308 0.7302 0.9461
-0.779 0.2536 3222 0.6463 0.8241
-0.8698 0.2847 9971 0.752 0.9167
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diff --git a/data/census.txt.gz b/data/census.txt.gz
new file mode 100644
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diff --git a/data/forgnlit30.txt b/data/forgnlit30.txt
deleted file mode 100644
index cbd36b2..0000000
--- a/data/forgnlit30.txt
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diff --git a/data/forgnlit30.txt.gz b/data/forgnlit30.txt.gz
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diff --git a/data/forgnlit30c.txt b/data/forgnlit30c.txt
deleted file mode 100644
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\ No newline at end of file
diff --git a/data/forgnlit30c.txt.gz b/data/forgnlit30c.txt.gz
new file mode 100644
index 0000000..0ecafe0
Binary files /dev/null and b/data/forgnlit30c.txt.gz differ
diff --git a/data/housep88.txt b/data/housep88.txt
deleted file mode 100644
index 9ec3524..0000000
--- a/data/housep88.txt
+++ /dev/null
@@ -1,425 +0,0 @@
-Y X N HPCT DIST
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diff --git a/data/housep88.txt.gz b/data/housep88.txt.gz
new file mode 100644
index 0000000..57f2276
Binary files /dev/null and b/data/housep88.txt.gz differ
diff --git a/data/reg.txt b/data/reg.txt
deleted file mode 100644
index 56041ab..0000000
--- a/data/reg.txt
+++ /dev/null
@@ -1,276 +0,0 @@
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diff --git a/data/reg.txt.gz b/data/reg.txt.gz
new file mode 100644
index 0000000..53548d2
Binary files /dev/null and b/data/reg.txt.gz differ
diff --git a/data/wallace.txt b/data/wallace.txt
deleted file mode 100644
index fb94f55..0000000
--- a/data/wallace.txt
+++ /dev/null
@@ -1,1010 +0,0 @@
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-22123 0.78 0.22
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-28003 0.69 0.13
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-28137 0.61 0.58
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-37015 0.44 0.59
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-37029 0.55 0.42
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-37033 0.47 0.48
-37035 0.22 0.09
-37037 0.31 0.31
-37039 0.13 0.02
-37041 0.46 0.47
-37043 0.12 0.01
-37045 0.43 0.22
-37047 0.45 0.33
-37049 0.47 0.28
-37051 0.33 0.25
-37053 0.57 0.32
-37055 0.33 0.07
-37057 0.32 0.11
-37059 0.32 0.12
-37061 0.5 0.38
-37063 0.32 0.32
-37065 0.41 0.52
-37067 0.23 0.24
-37069 0.57 0.44
-37071 0.33 0.13
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-47033 0.64 0.24
-47035 0.24 0.0001
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-47041 0.39 0.03
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-47049 0.23 0.0001
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-47059 0.2 0.03
-47061 0.46 0.0001
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-47135 0.39 0.04
-47137 0.13 0.0001
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-47151 0.18 0.0001
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-47157 0.33 0.36
-47159 0.42 0.05
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-47163 0.25 0.02
-47165 0.46 0.11
-47167 0.59 0.39
-47169 0.41 0.17
-47171 0.17 0.0001
-47173 0.15 0.0001
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-47177 0.49 0.05
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-48009 0.18 0.0001
-48011 0.22 0.0001
-48013 0.15 0.01
-48015 0.25 0.21
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-48019 0.24 0.01
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-48033 0.29 0.0001
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-48041 0.16 0.21
-48043 0.16 0.01
-48045 0.19 0.05
-48047 0.06 0.0001
-48049 0.19 0.03
-48051 0.21 0.31
-48053 0.16 0.02
-48055 0.16 0.15
-48057 0.2 0.05
-48059 0.24 0.0001
-48061 0.07 0.01
-48063 0.37 0.38
-48065 0.21 0.0001
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-48109 0.19 0.0001
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-48115 0.2 0.06
-48123 0.15 0.14
-48117 0.15 0.02
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-48131 0.03 0.0001
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-48141 0.08 0.03
-48139 0.24 0.24
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-48147 0.23 0.1
-48149 0.27 0.14
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-48155 0.17 0.09
-48157 0.21 0.2
-48159 0.25 0.08
-48161 0.26 0.39
-48163 0.13 0.01
-48165 0.29 0.03
-48167 0.2 0.21
-48169 0.23 0.05
-48171 0.11 0.0001
-48173 0.38 0.01
-48175 0.1 0.12
-48177 0.22 0.18
-48179 0.22 0.03
-48181 0.2 0.09
-48183 0.35 0.23
-48185 0.28 0.38
-48187 0.14 0.11
-48189 0.22 0.05
-48191 0.2 0.13
-48193 0.16 0.0001
-48195 0.2 0.0001
-48197 0.21 0.12
-48199 0.45 0.16
-48201 0.18 0.2
-48203 0.38 0.43
-48205 0.23 0.0001
-48207 0.19 0.06
-48209 0.1 0.06
-48211 0.15 0.0001
-48213 0.31 0.21
-48215 0.07 0.0001
-48217 0.25 0.16
-48219 0.24 0.06
-48221 0.19 0.01
-48223 0.3 0.13
-48225 0.33 0.38
-48227 0.27 0.04
-48229 0.19 0.0001
-48231 0.27 0.16
-48233 0.29 0.02
-48235 0.19 0.01
-48237 0.2 0.01
-48239 0.27 0.12
-48241 0.4 0.25
-48243 0.13 0.0001
-48245 0.28 0.23
-48247 0.03 0.0001
-48249 0.09 0.01
-48251 0.22 0.05
-48253 0.19 0.06
-48255 0.16 0.03
-48257 0.29 0.3
-48259 0.15 0.01
-48261 0.04 0.0001
-48263 0.3 0.03
-48265 0.16 0.04
-48267 0.19 0.0001
-48269 0.32 0.07
-48271 0.11 0.08
-48273 0.08 0.03
-48275 0.15 0.07
-48283 0.1 0.0001
-48277 0.27 0.19
-48279 0.23 0.08
-48281 0.16 0.03
-48285 0.27 0.1
-48287 0.21 0.24
-48289 0.29 0.38
-48291 0.35 0.23
-48293 0.25 0.28
-48295 0.12 0.0001
-48297 0.21 0.0001
-48299 0.16 0.01
-48301 0.49 0.04
-48303 0.18 0.08
-48305 0.19 0.06
-48313 0.32 0.33
-48315 0.34 0.52
-48317 0.43 0.04
-48319 0.11 0.01
-48321 0.21 0.21
-48323 0.07 0.0001
-48307 0.14 0.04
-48309 0.18 0.16
-48311 0.23 0.0001
-48325 0.14 0.01
-48327 0.12 0.01
-48329 0.24 0.09
-48331 0.24 0.18
-48333 0.18 0.0001
-48335 0.17 0.07
-48337 0.18 0.0001
-48339 0.37 0.23
-48341 0.25 0.0001
-48343 0.32 0.27
-48345 0.27 0.09
-48347 0.32 0.27
-48349 0.22 0.25
-48351 0.43 0.33
-48353 0.2 0.04
-48355 0.11 0.05
-48357 0.16 0.0001
-48359 0.29 0.0001
-48361 0.42 0.1
-48363 0.17 0.04
-48365 0.45 0.31
-48367 0.21 0.02
-48369 0.24 0.03
-48371 0.22 0.01
-48373 0.37 0.29
-48375 0.2 0.07
-48377 0.08 0.0001
-48379 0.25 0.1
-48381 0.17 0.0001
-48383 0.26 0.07
-48385 0.19 0.0001
-48387 0.3 0.24
-48389 0.21 0.04
-48391 0.15 0.09
-48393 0.22 0.0001
-48395 0.2 0.41
-48397 0.29 0.24
-48399 0.17 0.03
-48401 0.38 0.29
-48403 0.38 0.26
-48405 0.46 0.39
-48407 0.3 0.52
-48409 0.15 0.02
-48411 0.22 0.01
-48413 0.19 0.03
-48415 0.22 0.03
-48417 0.18 0.03
-48419 0.47 0.26
-48421 0.27 0.0001
-48423 0.31 0.27
-48425 0.23 0.0001
-48427 0.01 0.0001
-48429 0.17 0.04
-48431 0.14 0.01
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-48441 0.17 0.05
-48443 0.25 0.0001
-48445 0.19 0.04
-48447 0.12 0.0001
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-48451 0.16 0.05
-48453 0.1 0.13
-48455 0.36 0.27
-48457 0.39 0.21
-48459 0.42 0.26
-48461 0.29 0.04
-48463 0.16 0.01
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-48467 0.31 0.08
-48469 0.16 0.09
-48471 0.25 0.33
-48473 0.23 0.54
-48475 0.32 0.03
-48477 0.12 0.32
-48479 0.03 0.0001
-48481 0.19 0.21
-48483 0.22 0.04
-48485 0.18 0.07
-48487 0.25 0.09
-48489 0.13 0.01
-48491 0.16 0.14
-48493 0.13 0.02
-48495 0.35 0.03
-48497 0.19 0.01
-48499 0.32 0.16
-48501 0.29 0.01
-48503 0.19 0.02
-48505 0.04 0.0001
-48507 0.1 0.01
diff --git a/data/wallace.txt.gz b/data/wallace.txt.gz
new file mode 100644
index 0000000..ac241b4
Binary files /dev/null and b/data/wallace.txt.gz differ
diff --git a/inst/CITATION b/inst/CITATION
new file mode 100644
index 0000000..9609435
--- /dev/null
+++ b/inst/CITATION
@@ -0,0 +1,21 @@
+citHeader("To cite eco in publications use:")
+
+citEntry(entry = "Article",
+ title = "eco: R Package for Ecological Inference in 2 x 2 Tables",
+ author = personList(as.person("Kosuke Imai"),
+ as.person("Ying Lu"),
+ as.person("Aaron Strauss")),
+ journal = "Journal of Statistical Software",
+ year = "2011",
+ volume = "42",
+ number = "5",
+ pages = "1--23",
+ url = "http://www.jstatsoft.org/v42/i05/",
+
+ textVersion =
+ paste("Kosuke Imai, Ying Lu, and Aaron Strauss (2011).",
+ "eco: R Package for Ecological Inference in 2 x 2 Tables.",
+ "Journal of Statistical Software, Vol. 42, No. 5, pp. 1-23.",
+ "URL http://www.jstatsoft.org/v42/i05/")
+)
+
diff --git a/man/eco.Rd b/man/eco.Rd
index edc0b27..8494712 100644
--- a/man/eco.Rd
+++ b/man/eco.Rd
@@ -201,10 +201,8 @@ summary(out1)
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu}
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu}
}
\references{
diff --git a/man/ecoML.Rd b/man/ecoML.Rd
index eae5fed..9b29862 100644
--- a/man/ecoML.Rd
+++ b/man/ecoML.Rd
@@ -230,10 +230,8 @@ surv <- 1:600
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu};
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu};
Aaron Strauss, Department of Politics, Princeton University,
\email{abstraus at Princeton.Edu}.
}
diff --git a/man/ecoNP.Rd b/man/ecoNP.Rd
index b390f96..a618fbc 100644
--- a/man/ecoNP.Rd
+++ b/man/ecoNP.Rd
@@ -197,10 +197,8 @@ summary(pres1)
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu}
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu}
}
\references{
diff --git a/man/summary.eco.Rd b/man/summary.eco.Rd
index 42c9ecc..4df760e 100644
--- a/man/summary.eco.Rd
+++ b/man/summary.eco.Rd
@@ -66,10 +66,8 @@
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu}
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu}
}
\keyword{methods}
diff --git a/man/summary.ecoML.Rd b/man/summary.ecoML.Rd
index c8dafe1..4770496 100644
--- a/man/summary.ecoML.Rd
+++ b/man/summary.ecoML.Rd
@@ -80,11 +80,8 @@
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu};
-Aaron Strauss, Department of Politics,
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu}; Aaron Strauss, Department of Politics,
Princeton University, \email{abstraus at Princeton.Edu}
}
diff --git a/man/summary.ecoNP.Rd b/man/summary.ecoNP.Rd
index 18166aa..0e39f83 100644
--- a/man/summary.ecoNP.Rd
+++ b/man/summary.ecoNP.Rd
@@ -64,10 +64,8 @@ Ecological Inference in 2x2 Tables }
\author{
Kosuke Imai, Department of Politics, Princeton University,
\email{kimai at Princeton.Edu}, \url{http://imai.princeton.edu};
- Ying Lu, Department of Humanities and Social Sciences in the
-Professions, Steinhardt School of Culture, Education and Human
-Development, New York University,
- \email{yl46 at Nyu.Edu}
+ Ying Lu, Department of Sociology, University of Colorado at Boulder,
+ \email{ying.lu at Colorado.Edu}
}
\keyword{methods}
diff --git a/src/gibbsEM.c b/src/gibbsEM.c
index 50f8098..ad24492 100644
--- a/src/gibbsEM.c
+++ b/src/gibbsEM.c
@@ -1191,7 +1191,7 @@ void initCCAR(Param* params, double* pdTheta) {
/*Current version of program does not handle homogenous data*/
if ((x1_samp+x0_samp)>0) {
- printf("WARNING: Homogenous data is ignored and not handled by the current version of eco.");
+ Rprintf("WARNING: Homogenous data is ignored and not handled by the current version of eco.");
}
@@ -1216,11 +1216,15 @@ void printColumnHeader(int main_loop, int iteration_max, setParam* setP, int fin
int param_len;
param_len = setP->param_len;
- char temp[50]; int hlen;
- if (!finalTheta) hlen=sprintf(temp, "cycle %d/%d:",main_loop,iteration_max); //Length of cycle text
- else hlen=sprintf(temp, "Final Theta:");
- for (i=0;i<hlen;i++) Rprintf(" ");
-
+ //trying to print nicely, but it throws an error
+ //char temp[50]; int hlen;
+ //if (!finalTheta) hlen=sprintf(temp, "cycle %d/%d:",main_loop,iteration_max); //Length of cycle text
+ //else hlen=sprintf(temp, "Final Theta:");
+ //for (i=0;i<hlen;i++) Rprintf(" ");
+
+ if (!finalTheta) Rprintf("cycle %d/%d:",main_loop,iteration_max);
+ else Rprintf("Final Theta:");
+
if (param_len<=5) { //CAR
Rprintf(" mu_1 mu_2 sig_1 sig_2");
if (!setP->fixedRho || finalTheta) Rprintf(" r_12");
diff --git a/src/gibbsZBase.c b/src/gibbsZBase.c
index 513790b..cff8ac5 100644
--- a/src/gibbsZBase.c
+++ b/src/gibbsZBase.c
@@ -268,7 +268,7 @@ void cBaseecoZ(
for (i=0; i<x1_samp; i++) {
dtemp=mu[n_samp+i][1]+Sigma[0][1]/Sigma[0][0]*(Wstar[n_samp+i][0]-mu[n_samp+i][0]);
dtemp1=Sigma[1][1]*(1-Sigma[0][1]*Sigma[0][1]/(Sigma[0][0]*Sigma[1][1]));
- printf("\n%14g%14g\n", dtemp, dtemp1);
+ Rprintf("\n%14g%14g\n", dtemp, dtemp1);
dtemp1=sqrt(dtemp1);
Wstar[n_samp+i][1]=rnorm(dtemp, dtemp1);
W[n_samp+i][1]=exp(Wstar[n_samp+i][1])/(1+exp(Wstar[n_samp+i][1]));
diff --git a/src/subroutines.c b/src/subroutines.c
index b946ea4..5c3dae3 100644
--- a/src/subroutines.c
+++ b/src/subroutines.c
@@ -365,6 +365,6 @@ void dcholdc2D(double *X, int size, double *L)
}
int main () {
- printf("hello world");
+ Rprintf("hello world");
return 0;
}
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-eco.git
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