[r-cran-mcmcpack] branch master updated (55cd6d6 -> e95af35)
Andreas Tille
tille at debian.org
Fri Sep 8 08:21:05 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-mcmcpack.
from 55cd6d6 Fix copyright information
adds ffe59cf New upstream version 1.4-0
new 1b5b796 Updated version 1.4-0 from 'upstream/1.4-0'
new 0619a1b New upstream version
new bc55c68 Standards-Version: 4.1.0 (no changes needed)
new e95af35 Add debian/README.source to document binary files; upload to unstable
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 15 +-
MD5 | 304 ++++----
NAMESPACE | 184 +++--
R/BayesFactors.R | 192 ++++-
R/HDPHMMnegbin.R | 437 +++++++++++
R/HDPHMMpoisson.R | 325 ++++++++
R/HDPHSMMnegbin.R | 433 +++++++++++
R/HMMpanelFE.R | 248 +++++-
R/HMMpanelRE.R | 298 ++++++-
R/MCMCSVDreg.R | 175 ++++-
R/MCMCbinaryChange.R | 350 ++++++---
R/MCMCdynamicEI.R | 233 +++++-
R/MCMCdynamicIRT1d-b.R | 119 +--
R/MCMCdynamicIRT1d.R | 375 +++++++--
R/MCMCfactanal.R | 213 ++++-
R/MCMChierEI.R | 200 ++++-
R/MCMChlogit.R | 286 ++++++-
R/MCMChpoisson.R | 274 ++++++-
R/MCMChregress.R | 251 +++++-
R/MCMCirt1d.R | 245 +++++-
R/MCMCirtHier1d.R | 324 +++++++-
R/MCMCirtKd.R | 212 ++++-
R/MCMCirtKdHet.R | 242 ------
R/MCMCirtKdRob.R | 421 ++++++++--
R/MCMClogit.R | 273 +++++--
R/MCMCmetrop1R.R | 250 +++++-
R/MCMCmixfactanal.R | 323 +++++++-
R/MCMCmnl.R | 352 +++++++--
R/MCMCnegbin.R | 356 +++++++++
R/MCMCnegbinChange.R | 412 ++++++++++
R/MCMCoprobit.R | 228 +++++-
R/MCMCoprobitChange.R | 261 +++++--
R/MCMCordfactanal.R | 265 ++++++-
R/MCMCpack-package.R | 13 +
R/MCMCpoisson.R | 166 +++-
R/MCMCpoissonChange.R | 562 +++++++++-----
R/MCMCprobit.R | 199 ++++-
R/MCMCprobitChange.R | 226 +++++-
R/MCMCquantreg.R | 174 ++++-
R/MCMCregress.R | 187 ++++-
R/MCMCregressChange.R | 313 ++++++--
R/MCMCresidualBreakAnalysis.R | 245 +++++-
R/MCMCtobit.R | 174 ++++-
R/MCmodels.R | 252 +++++-
R/SSVSquantreg.R | 182 ++++-
R/SSVSquantregsummary.R | 292 +++++--
R/btsutil.R | 257 +++++--
R/data.R | 170 ++++
R/distn.R | 368 +++++++--
R/hdp-utils.R | 58 ++
R/make.breaklist.R | 26 +
R/procrust.R | 50 +-
R/scythe.R | 67 +-
R/testpanelGroupBreak.R | 232 +++++-
R/testpanelSubjectBreak.R | 206 ++++-
R/tomog.R | 201 ++++-
R/utility.R | 60 +-
debian/README.source | 24 +
debian/changelog | 9 +
debian/control | 2 +-
man/BayesFactor.Rd | 62 +-
man/Dirichlet.Rd | 49 ++
man/HDPHMMnegbin.Rd | 219 ++++++
man/HDPHMMpoisson.Rd | 187 +++++
man/HDPHSMMnegbin.Rd | 233 ++++++
man/HMMpanelFE.Rd | 218 +++---
man/HMMpanelRE.Rd | 338 ++++----
man/InvGamma.Rd | 53 ++
man/InvWishart.Rd | 40 +
man/MCMCSVDreg.Rd | 268 +++----
man/MCMCbinaryChange.Rd | 286 +++----
man/MCMCdynamicEI.Rd | 283 ++++---
man/MCMCdynamicIRT1d.Rd | 461 +++++------
man/MCMCfactanal.Rd | 322 ++++----
man/MCMChierEI.Rd | 263 +++----
man/MCMChlogit.Rd | 371 +++++----
man/MCMChpoisson.Rd | 363 +++++----
man/MCMChregress.Rd | 322 ++++----
man/MCMCirt1d.Rd | 376 +++++----
man/MCMCirtHier1d.Rd | 493 ++++++------
man/MCMCirtKd.Rd | 394 +++++-----
man/MCMCirtKdHet.Rd | 191 -----
man/MCMCirtKdRob.Rd | 590 +++++++-------
man/MCMClogit.Rd | 280 ++++---
man/MCMCmetrop1R.Rd | 268 ++++---
man/MCMCmixfactanal.Rd | 448 +++++------
man/MCMCmnl.Rd | 325 ++++----
man/MCMCnegbin.Rd | 166 ++++
man/MCMCnegbinChange.Rd | 219 ++++++
man/MCMCoprobit.Rd | 280 ++++---
man/MCMCoprobitChange.Rd | 383 +++++----
man/MCMCordfactanal.Rd | 374 +++++----
man/MCMCpoisson.Rd | 227 +++---
man/MCMCpoissonChange.Rd | 303 ++++----
man/MCMCprobit.Rd | 236 +++---
man/MCMCprobitChange.Rd | 359 +++++----
man/MCMCquantreg.Rd | 243 +++---
man/MCMCregress.Rd | 283 ++++---
man/MCMCregressChange.Rd | 435 +++++------
man/MCMCresidualBreakAnalysis.Rd | 270 ++++---
man/MCMCtobit.Rd | 286 +++----
man/MCbinomialbeta.Rd | 64 +-
man/MCmultinomdirichlet.Rd | 67 +-
man/MCnormalnormal.Rd | 67 +-
man/MCpoissongamma.Rd | 62 +-
man/Nethvote.Rd | 90 ++-
man/NoncenHypergeom.Rd | 58 ++
man/PErisk.Rd | 75 +-
man/PostProbMod.Rd | 48 +-
man/QRSSVSplot.Rd | 50 --
man/QRSSVSsummary.Rd | 42 -
man/Rehnquist.Rd | 45 +-
man/SSVSquantreg.Rd | 220 +++---
man/Senate.Rd | 38 +-
man/SupremeCourt.Rd | 42 +-
man/Wishart.Rd | 39 +
man/choicevar.Rd | 29 +-
man/dirichlet.Rd | 43 --
man/dtomog.Rd | 124 ---
man/dtomogplot.Rd | 116 +++
man/invgamma.Rd | 46 --
man/iwishart.Rd | 39 -
man/make.breaklist.Rd | 42 +-
man/mptable.Rd | 42 +-
man/noncenhypergeom.Rd | 57 --
man/plot.qrssvs.Rd | 54 ++
man/plotChangepoint.Rd | 35 +-
man/plotHDPChangepoint.Rd | 30 +
man/plotState.Rd | 34 +-
man/procrust.Rd | 51 --
man/procrustes.Rd | 45 ++
man/read.Scythe.Rd | 34 +
man/readscythe.Rd | 36 -
man/summaryqrssvs.Rd | 54 ++
man/testpanelGroupBreak.Rd | 197 ++---
man/testpanelSubjectBreak.Rd | 200 ++---
man/tomog.Rd | 82 --
man/tomogplot.Rd | 77 ++
man/topmodels.Rd | 50 +-
man/vech.Rd | 42 +-
man/wishart.Rd | 39 -
man/write.Scythe.Rd | 40 +
man/writescythe.Rd | 42 -
man/xpnd.Rd | 52 +-
src/HMMmultivariateGaussian.cc | 106 +--
src/MCMCnbutil.cc | 342 +++++++++
src/MCMCnbutil.h | 323 ++++++++
src/MCMCpack_init.c | 108 +++
src/cHDPHMMnegbin.cc | 671 ++++++++++++++++
src/cHDPHMMpoisson.cc | 589 ++++++++++++++
src/cHDPHSMMnegbin.cc | 780 +++++++++++++++++++
src/{HMMpanelFE.cc => cHMMpanelFE.cc} | 258 +++----
src/{HMMpanelRE.cc => cHMMpanelRE.cc} | 792 +++++++++----------
src/{MCMCSVDreg.cc => cMCMCSVDreg.cc} | 132 ++--
src/{MCMCbinaryChange.cc => cMCMCbinaryChange.cc} | 294 +++----
...CMCdynamicIRT1d-b.cc => cMCMCdynamicIRT1d-b.cc} | 142 ++--
src/{MCMCdynamicIRT1d.cc => cMCMCdynamicIRT1d.cc} | 136 ++--
src/{MCMCfactanal.cc => cMCMCfactanal.cc} | 126 +--
src/{MCMChlogit.cc => cMCMChlogit.cc} | 72 +-
src/{MCMChpoisson.cc => cMCMChpoisson.cc} | 72 +-
src/{MCMChregress.cc => cMCMChregress.cc} | 58 +-
src/{MCMCirt1d.cc => cMCMCirt1d.cc} | 52 +-
src/{MCMCirtHier1d.cc => cMCMCirtHier1d.cc} | 116 +--
src/{MCMClogit.cc => cMCMClogit.cc} | 70 +-
src/cMCMCnegbin.cc | 465 +++++++++++
src/cMCMCnegbinChange.cc | 855 +++++++++++++++++++++
src/{MCMCoprobit.cc => cMCMCoprobit.cc} | 190 ++---
...{MCMCoprobitChange.cc => cMCMCoprobitChange.cc} | 482 ++++++------
src/{MCMCpoisson.cc => cMCMCpoisson.cc} | 90 +--
...{MCMCpoissonChange.cc => cMCMCpoissonChange.cc} | 802 +++++++++----------
src/{MCMCprobit.cc => cMCMCprobit.cc} | 98 +--
src/{MCMCprobitChange.cc => cMCMCprobitChange.cc} | 314 ++++----
src/{MCMCprobitres.cc => cMCMCprobitres.cc} | 0
src/{MCMCquantreg.cc => cMCMCquantreg.cc} | 42 +-
src/{MCMCregress.cc => cMCMCregress.cc} | 56 +-
...{MCMCregressChange.cc => cMCMCregressChange.cc} | 462 ++++++-----
...akAnalysis.cc => cMCMCresidualBreakAnalysis.cc} | 477 ++++++------
src/{MCMCtobit.cc => cMCMCtobit.cc} | 70 +-
src/{SSVSquantreg.cc => cSSVSquantreg.cc} | 66 +-
src/rng.h | 2 +-
180 files changed, 26322 insertions(+), 11685 deletions(-)
create mode 100644 R/HDPHMMnegbin.R
create mode 100644 R/HDPHMMpoisson.R
create mode 100644 R/HDPHSMMnegbin.R
delete mode 100644 R/MCMCirtKdHet.R
create mode 100644 R/MCMCnegbin.R
create mode 100644 R/MCMCnegbinChange.R
create mode 100644 R/MCMCpack-package.R
create mode 100644 R/data.R
create mode 100644 R/hdp-utils.R
create mode 100644 debian/README.source
create mode 100644 man/Dirichlet.Rd
create mode 100644 man/HDPHMMnegbin.Rd
create mode 100644 man/HDPHMMpoisson.Rd
create mode 100644 man/HDPHSMMnegbin.Rd
create mode 100644 man/InvGamma.Rd
create mode 100644 man/InvWishart.Rd
mode change 100755 => 100644 man/MCMCbinaryChange.Rd
delete mode 100644 man/MCMCirtKdHet.Rd
create mode 100644 man/MCMCnegbin.Rd
create mode 100644 man/MCMCnegbinChange.Rd
create mode 100644 man/NoncenHypergeom.Rd
delete mode 100644 man/QRSSVSplot.Rd
delete mode 100644 man/QRSSVSsummary.Rd
create mode 100644 man/Wishart.Rd
delete mode 100644 man/dirichlet.Rd
delete mode 100644 man/dtomog.Rd
create mode 100644 man/dtomogplot.Rd
delete mode 100644 man/invgamma.Rd
delete mode 100644 man/iwishart.Rd
delete mode 100644 man/noncenhypergeom.Rd
create mode 100644 man/plot.qrssvs.Rd
mode change 100755 => 100644 man/plotChangepoint.Rd
create mode 100644 man/plotHDPChangepoint.Rd
mode change 100755 => 100644 man/plotState.Rd
delete mode 100644 man/procrust.Rd
create mode 100644 man/procrustes.Rd
create mode 100644 man/read.Scythe.Rd
delete mode 100644 man/readscythe.Rd
create mode 100644 man/summaryqrssvs.Rd
delete mode 100644 man/tomog.Rd
create mode 100644 man/tomogplot.Rd
delete mode 100644 man/wishart.Rd
create mode 100644 man/write.Scythe.Rd
delete mode 100644 man/writescythe.Rd
create mode 100644 src/MCMCnbutil.cc
create mode 100644 src/MCMCnbutil.h
create mode 100644 src/MCMCpack_init.c
create mode 100644 src/cHDPHMMnegbin.cc
create mode 100644 src/cHDPHMMpoisson.cc
create mode 100644 src/cHDPHSMMnegbin.cc
rename src/{HMMpanelFE.cc => cHMMpanelFE.cc} (71%)
rename src/{HMMpanelRE.cc => cHMMpanelRE.cc} (76%)
rename src/{MCMCSVDreg.cc => cMCMCSVDreg.cc} (79%)
rename src/{MCMCbinaryChange.cc => cMCMCbinaryChange.cc} (64%)
rename src/{MCMCdynamicIRT1d-b.cc => cMCMCdynamicIRT1d-b.cc} (90%)
rename src/{MCMCdynamicIRT1d.cc => cMCMCdynamicIRT1d.cc} (90%)
rename src/{MCMCfactanal.cc => cMCMCfactanal.cc} (70%)
rename src/{MCMChlogit.cc => cMCMChlogit.cc} (94%)
rename src/{MCMChpoisson.cc => cMCMChpoisson.cc} (94%)
rename src/{MCMChregress.cc => cMCMChregress.cc} (94%)
rename src/{MCMCirt1d.cc => cMCMCirt1d.cc} (85%)
rename src/{MCMCirtHier1d.cc => cMCMCirtHier1d.cc} (86%)
rename src/{MCMClogit.cc => cMCMClogit.cc} (84%)
create mode 100644 src/cMCMCnegbin.cc
create mode 100644 src/cMCMCnegbinChange.cc
rename src/{MCMCoprobit.cc => cMCMCoprobit.cc} (83%)
rename src/{MCMCoprobitChange.cc => cMCMCoprobitChange.cc} (69%)
rename src/{MCMCpoisson.cc => cMCMCpoisson.cc} (77%)
rename src/{MCMCpoissonChange.cc => cMCMCpoissonChange.cc} (61%)
rename src/{MCMCprobit.cc => cMCMCprobit.cc} (77%)
rename src/{MCMCprobitChange.cc => cMCMCprobitChange.cc} (64%)
rename src/{MCMCprobitres.cc => cMCMCprobitres.cc} (100%)
rename src/{MCMCquantreg.cc => cMCMCquantreg.cc} (87%)
rename src/{MCMCregress.cc => cMCMCregress.cc} (89%)
rename src/{MCMCregressChange.cc => cMCMCregressChange.cc} (60%)
rename src/{MCMCresidualBreakAnalysis.cc => cMCMCresidualBreakAnalysis.cc} (57%)
rename src/{MCMCtobit.cc => cMCMCtobit.cc} (78%)
rename src/{SSVSquantreg.cc => cSSVSquantreg.cc} (90%)
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