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<p class="MsoNormal"><span lang="EN-US">Dear neurodebian developers,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">First of all, thank you for making this great software available!<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">I hope you could give me some feedback on two issues I came across when installing fsl 5.0.9 on Ubuntu 16.04 using the neurodebian repositories:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">1.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">Feeds: to test the system I ran the neurodebian included feeds which passes the tests but it warns that the Data suite is v5.0.4 while the fsl version is 5.0.9. Then I downloaded the 5.0.9 feeds from the fsl
website, but this version actually crashed with an error message that I did not understand ( see below) . Should I be worried about the downloaded 5.0.9 Feeds version not passing the test?<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">2.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">There were two bugs in fslview:<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo1">
<![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">a.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">The text box displaying the Intensity value of the selected voxel does not show the left most part of floating point numbers: a value of 1645.99 may for example be shown as 645.99. The mouse-over will display
the correct number, or one can click on the value and press the home button to left-align. While this is technically a very minor issue, it makes checking intensity values much more time consuming. Is there a way to fix this? If I can contribute somehow please
let me know.<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo1">
<![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">b.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">An image may still be visible even when none of the images are set to be visible: the last image that was marked visible will still be visible after unmarking it until another image is marked as visible.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Thanks in advance for your feedback.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Best regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Iman Brouwer<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">VUMC, Amsterdam<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">---------------------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">last part of feeds 5.0.9 log:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Starting FDT (bedpost) at Tue Feb 7 16:11:11 CET 2017<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">child process exited abnormally<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"> while executing<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">"fsl:exec "unset FSLMACHINELIST DYLD_LIBRARY_PATH LD_LIBRARY_PATH; ${FSLDIR}/bin/bedpostx $FEEDSDIR/results/fdt_subj1 -n 1""<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"> invoked from within<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">"if { $feeds(fdt) } {<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">puts "\nStarting FDT (bedpost) at [ exec date ]"<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">fsl:exec "cp -r $FEEDSDIR/data/fdt_subj1 $FEEDSDIR/results"<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">fsl:exec "unset FS..."<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"> (file "./RUN" line 393)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Command exited with non-zero status 1<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">1121.32user 9.95system 23:13.70elapsed 81%CPU (0avgtext+0avgdata 988828maxresident)k<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">335944inputs+1034432outputs (179major+2613283minor)pagefaults 0swaps<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><b><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">MASc Iman Brouwer</span></b><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><br>
Image Processing Support Engineer<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">VU University Medical Center Amsterdam -
</span><span lang="EN-US" style="font-size:9.0pt;mso-fareast-language:NL">Department of Radiology and Nuclear Medicine<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">E: i.brouwer2@vumc.nl<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">P: +31 (20) 444 0331<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"> <o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">Present: Monday Wednesday Thursday
<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">Working remotely: Friday
<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"> <o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">De Boelelaan 1118 PK -1X104, 1081 HV Amsterdam<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"> <o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL">Mailing adress: Postbus 7057, 1007 MB Amsterdam<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-US" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-GB" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><a href="http://www.vumc.com/"><span lang="EN-US" style="color:blue">www.vumc.com</span></a>
<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-GB" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><a href="http://www.vumc.com/directions"><span lang="EN-US" style="color:blue">www.vumc.com/directions</span></a>
</span><span lang="EN-GB" style="font-family:"Arial","sans-serif";mso-fareast-language:NL"> <o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-GB" style="font-family:"Arial","sans-serif";mso-fareast-language:NL">---------------------------------------------------</span><span lang="EN-GB" style="font-size:15.0pt;mso-fareast-language:NL"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><b><i><span lang="EN-GB" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#6D6D6D;mso-fareast-language:NL">Disclaimer</span></i></b><span lang="EN-GB" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#6D6D6D;mso-fareast-language:NL"><br>
This e-mail is confidential and may contain information that is not intended for you. If you are not the addressee or if this message was sent to you by mistake, you are requested to inform the sender and delete the message. VU University Medical Center accepts
no liability for damage of any kind resulting from the risks inherent in the electronic transmission of messages.</span><span lang="EN-GB" style="font-size:8.0pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="EN-GB" style="font-family:"Arial","sans-serif";mso-fareast-language:NL">---------------------------------------------------</span><span style="font-size:8.5pt;font-family:"Arial","sans-serif";mso-fareast-language:NL"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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