[pkg-bioc] how to proceed?
Dirk Eddelbuettel
edd@debian.org
Sat, 19 Feb 2005 15:15:35 -0600
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On 19 February 2005 at 20:53, Egon Willighagen wrote:
| On Saturday 19 February 2005 20:47, Dirk Eddelbuettel wrote:
| > | BTW, how did you make a mirror of just the packages instead of the whole
| > | of CRAN?
| >
| > I don't understand the question. I downloaded all source packages from
| > CRAN, plus one or two of the meta files that have all the information.
| > Those are parsed mostly with Perl tools included in R.
|
| Did you download those manually? Or do you use a script or a rsync command for
| that?
I used a wget command that is in the comments header:
# - the command
# wget --retr-symlinks -I"contrib/main/Descriptions" -nH -m \
# "ftp://cran.us.r-project.org/contrib/main/"
# retrieves the top-level files as well as the Descriptions dir
# and nothing else
| > BioC has its own mechanism with reposTools.
|
| Can you send the bioc2deb.pl too?
I did, actually. Didn't you get it? It should also be on alioth now.
Anyway, I'll re-attach bioc2deb.pl and BIOC2DEB.pm.
| > It would be nice if you (or someone else) could try to run the script and
| > see what happens. You will probably need to update things like build
| > dependencies.
|
| Yes, I want to try to get things build. I've got a amd64 machine so that would
| give a nice extra dimension for the packages with C/fortran/etc code.
Excellent news on both counts.
Dirk
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Better to have an approximate answer to the right question than a precise
answer to the wrong question. -- John Tukey as quoted by John Chambers
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