[pkg-bioc] pbuilder does not find newly built packages

[Steffen Moeller]

On Sunday 29 April 2007 18:45:20 David Vernazobres wrote:
> On Sun, Apr 29, 2007 at 12:53:36AM +0200, Steffen Moeller wrote :
> > Hi, it is time for me to say good night. I found the last issue with my
> > pbuilder-hook that works on bioc while I am compiling cran :-/  We do not
> > lose too much if we make the hook run on all our build directories
> > regardless what repository we are working with, do we? Well, maybe we do
> > for 1700 packages ...
>
> Well, we need them during the pbuilder build. We need to regenerate all
> the Packages.gz at each step, if not we missed the previously build deb
> and we can't go further for the build package process with pbuilder.
>
> > Here my changed hook (also added the ()s)
> >
> > #!/bin/sh
> > for m in cran bioc-1.9 omegahat; do
> >   (cd /nfshome/moeller/debian_moeller/debian/alioth/bioc/${m}/ &&
> >   /usr/bin/dpkg-scanpackages builds /dev/null | gzip > builds/Packages.gz
> > ) done
> > /usr/bin/apt-get update
>
> Hum, sorry, but what is the difference with the
> ${PBuilder_BuildPlaceHook}/D70apt script?
It is your script, only that all the directories are in and not only the one 
that was specified in the r_pkg_prepare.pl  (bioc for me).

> And I may be tired, but 
> what's the point for the ()s ?
Without the () the cwd changes and the next call to cd in the for loop will be 
unvalid since we are in the subdir now. ... which does not matter while only 
working on CRAN :-)

> > It went on for 24 packages (record!) and then failed for sensominer since
> > the hopach package indeed was not yet built. It was assigned to the bioc
> > repository but presented both in cran and in bioc, the latter
> > repository's version was newer, but sensominer in cran depends on it. For
> > now it is reassigned to cran.
>
> Hum, I think that I have a bit more packages built.... But I may cleanup
> everything and start a fresh build from scratch !

Over the night I made 54 packages in a row. Are you also with R 2.5 now? The 
last two breaks I had because of build failures, not because of the 
dependencies.

> > No more tries for tonight
> well, for me "No more tries for today" !

I'll give it another hour.

Cheers,

Steffen