[pkg-bioc] cran2deb.pl error on gmodels

Egon Willighagen egon.willighagen at gmail.com
Tue Aug 28 13:43:35 UTC 2007


(Is there no BTS?)

Error below:

************************************************
Packaging #22 of 1093: 'gmodels' (using sudo)
************************************************
Description file is available at gmodels-2.14.0/DESCRIPTION
Building package builds/r-cran-gmodels_2.14.0-0.r2d.1_all.deb ...
debuild: fatal error at line 1248:
fakeroot debian/rules binary failed
 fakeroot debian/rules clean
 dpkg-source -b gmodels-2.14.0
 debian/rules build
 fakeroot debian/rules binary
Error in loadNamespace(i[[1]], c(lib.loc, .libPaths())) :
        there is no package called 'gdata'
Execution halted
ERROR: lazy loading failed for package 'gmodels'
make: *** [R_any_arch] Error 1
=== start tail -30 gmodels_2.14.0.log ===
make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
dpatch deapply-all
rm -rf debian/patched
rm -f debian/stamp-patched
dpkg-source: building gmodels using existing gmodels_2.14.0.orig.tar.gz
dpkg-source: building gmodels in gmodels_2.14.0-0.r2d.1.diff.gz
dpkg-source: building gmodels in gmodels_2.14.0-0.r2d.1.dsc
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
dpatch apply-all
/usr/bin/make -f debian/rules update-config
make[1]: Entering directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
touch debian/stamp-patched
test -x debian/rules
test "`id -u`" = 0
dh_clean -k
dh_installdirs -A
mkdir -p "."
dh_installdirs          usr/lib/R/site-library
R CMD INSTALL -l
/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0/debian/r-cran-gmodels/usr/lib/R/site-library
--clean .
* Installing *source* package 'gmodels' ...
** R
** preparing package for lazy loading
** Removing '/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0/debian/r-cran-gmodels/usr/lib/R/site-library/gmodels'
=== end   tail -30 gmodels_2.14.0.log ===
build failed for builds/r-cran-gmodels_2.14.0-0.r2d.1_all.deb
        built in builds/gmodels-2.14.0
       logged as builds/gmodels_2.14.0.log

Egon

-- 
----
http://chem-bla-ics.blogspot.com/



More information about the pkg-bioc-devel mailing list