[pkg-bioc] cran2deb.pl error on gmodels

[Johannes Ranke]

Hi Egon,

* Egon Willighagen <egon.willighagen at gmail.com> [070828 16:50]:
> (Is there no BTS?)
> 
> Error below:
> 
> ************************************************
> Packaging #22 of 1093: 'gmodels' (using sudo)
> ************************************************
> Description file is available at gmodels-2.14.0/DESCRIPTION
> Building package builds/r-cran-gmodels_2.14.0-0.r2d.1_all.deb ...
> debuild: fatal error at line 1248:
> fakeroot debian/rules binary failed
>  fakeroot debian/rules clean
>  dpkg-source -b gmodels-2.14.0
>  debian/rules build
>  fakeroot debian/rules binary
> Error in loadNamespace(i[[1]], c(lib.loc, .libPaths())) :
>         there is no package called 'gdata'
                                     ^^^^^^^
If you wanted to build it with cran2deb.pl, you probably would need to
(build and install) gdata first. Last time I tried to build all CRAN
packages a long time ago, I added lots of such dependencies by hand.
Although I read on this list that this is more or less done now?

Since Stefan pointed out to us that gmodels is already in Debian, you
probably need to add it (and gdata) to some array called
"alreadyinDebian" or similar, if I recall correctly.

Just some random thoughts from my rather distant point of view,

Greetings,

Hannes

> Execution halted
> ERROR: lazy loading failed for package 'gmodels'
> make: *** [R_any_arch] Error 1
> === start tail -30 gmodels_2.14.0.log ===
> make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
> dpatch deapply-all
> rm -rf debian/patched
> rm -f debian/stamp-patched
> dpkg-source: building gmodels using existing gmodels_2.14.0.orig.tar.gz
> dpkg-source: building gmodels in gmodels_2.14.0-0.r2d.1.diff.gz
> dpkg-source: building gmodels in gmodels_2.14.0-0.r2d.1.dsc
> test -x debian/rules
> mkdir -p "."
> /usr/bin/make -f debian/rules reverse-config
> make[1]: Entering directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
> make[1]: Nothing to be done for `reverse-config'.
> make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
> dpatch apply-all
> /usr/bin/make -f debian/rules update-config
> make[1]: Entering directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
> make[1]: Nothing to be done for `update-config'.
> make[1]: Leaving directory `/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0'
> touch debian/stamp-patched
> test -x debian/rules
> test "`id -u`" = 0
> dh_clean -k
> dh_installdirs -A
> mkdir -p "."
> dh_installdirs          usr/lib/R/site-library
> R CMD INSTALL -l
> /home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0/debian/r-cran-gmodels/usr/lib/R/site-library
> --clean .
> * Installing *source* package 'gmodels' ...
> ** R
> ** preparing package for lazy loading
> ** Removing '/home/egonw/tmp/pkgbioc/cran/builds/gmodels-2.14.0/debian/r-cran-gmodels/usr/lib/R/site-library/gmodels'
> === end   tail -30 gmodels_2.14.0.log ===
> build failed for builds/r-cran-gmodels_2.14.0-0.r2d.1_all.deb
>         built in builds/gmodels-2.14.0
>        logged as builds/gmodels_2.14.0.log
> 
> Egon
> 
> -- 
> ----
> http://chem-bla-ics.blogspot.com/

-- 
Dr. Johannes Ranke                 jranke at uni-bremen.de     Key ID: F649AF90
UFT Bremen, Leobenerstr. 1         +49 421 218 63373
D-28359 Bremen                     http://www.uft.uni-bremen.de/chemie/ranke