[pkg-bioc] cran2deb.pl patch

[David Vernazobres]

Dear all, 
I submit an other patch :
The first hunk :
 * I do not find any r-cran-limma and any r-cran-pamr
   package in debian, as written in the script. 
 * I moved the rggobi package, from alreadyindebianCRAN 
   to alreadyindebianOMEGAHAT as the packages name seamed to have
   changed.

The second hunk is, I think, a typo. I do not found a bioc-package
biocase. So I assume, that it's a typo for biobase.

Is it right to send the patch to the mailing-list ? Or do I need to
subscribe to the Alioth g-forge ? Is there any patch review mechanisms 
availables ?
best regards,
david

-- 
David VERNAZOBRES, PhD student                     | dv at uni-muenster.de
Division of Bioinformatics, University of Muenster | Schlossplatz 4
(+49)(251)8321635                                  | D48149 Muenster
http://www.uni-muenster.de/Evolution.ebb/          | Germany
-------------- next part --------------
Index: cran2deb.pl
===================================================================
RCS file: /cvsroot/pkg-bioc/tools/cran2deb.pl,v
retrieving revision 1.46
diff -u -r1.46 cran2deb.pl
--- cran2deb.pl	19 Feb 2007 22:52:29 -0000	1.46
+++ cran2deb.pl	22 Feb 2007 14:29:35 -0000
@@ -262,17 +262,15 @@
   "MatchIt",      ## r-cran-matchit
   "misc3d",       ## r-cran-misc3d
   "pscl",         ## r-cran-pscl
-  "rggobi",	  ## r-cran-rggobi  (as of 31 Mar 2006)
   "XML",          ## r-cran-xml
   "Zelig",        ## r-cran-zelig
-  "limma",     ## in Debian as r-cran-limma
-  "pamr",      ## in Debian as r-cran-pamr
 );
 
 my @alreadyindebianBIOC = (
 );
 
 my @alreadyindebianOMEGAHAT = (
+   "rggobi",   ## r-omegahat-ggobi (as of 22 Feb 2007)
 );
 
 ## Programs are assumed to be DFSG compatible. Those we know not to be are 
@@ -705,7 +703,7 @@
 	       hypergraph => ["r-bioc-graph"],
 	       iSPlot => ["RGtk","gtkDevice"],
 	       iSNetwork => ["r-bioc-graph"],
-	       marray => ["r-bioc-biocase","r-cran-limma"],
+	       marray => ["r-bioc-biobase","r-cran-limma"],
 	       makecdfenv => ["r-bioc-biobase","r-bioc-affy"],
 	       matchprobes => ["r-bioc-affy"], # not in description
 	       mcrestimate => ["r-cran-e1071","r-cran-pamr",