[pkg-bioc] CVS %p

[Dirk Eddelbuettel]

On 20 May 2007 at 22:30, David Vernazobres wrote:
| Hi Dirk,
| 
| On 5/20/07, Dirk Eddelbuettel <edd at debian.org> wrote:
| 
| > |  * r_pkg_update.pl: The main idea behind was :
| > |   ** check the dependencies before cran2deb (failing 5 times
| > | consecutively... annoying...)
| > |   ** create or update the cran, bioc, omegahat local mirror. (--doupdate)
| >
| >
| > edd at basebud:~/src/debian/CRAN/cvs/tools> ./r_pkg_update.pl --doupdatebinarch=i386
| > Use of uninitialized value in split at ./r_pkg_update.pl line 385.
| > Created or connected database at 'database'.
| > closing dbh with active statement handles at ./r_pkg_update.pl line 877.
| 
| hummm, I do not know this option flag --doupdatebinarch ;)

It's just a formatting glitch in konsole. Let me tighten PS1:

edd at basebud > pwd
/home/edd/src/debian/CRAN/cvs/tools
edd at basebud > ./r_pkg_update.pl --doupdate  cran                                             
binarch=i386
Use of uninitialized value in split at ./r_pkg_update.pl line 385.
Created or connected database at 'database'.
closing dbh with active statement handles at ./r_pkg_update.pl line 877.
edd at basebud > 

and it still fails on a fresh checkput and setup, and the usage is not
documented in the wiki.  So what do I do, other than cry in my soup?

| $ ./r_pkg_update.pl --doupdatebinarch=i386
| Unknown option: doupdatebinarch
| Usage:
|     ./r_pkg_update.pl [options]
| 
| OK, it's due to the last added option --create-cran (that I never
| test). I was always using --create-all. Thanks for this report, I

edd at basebud > ./r_pkg_update.pl --doupdate --create-cran
Unknown option: create-cran
Usage:
    ./r_pkg_update.pl [options]

edd at basebud > 

No luck either. 

| spotted the problem. I will correct it.

Appreciate it!!

Dirk

-- 
Hell, there are no rules here - we're trying to accomplish something. 
                                                  -- Thomas A. Edison