[pkg-bioc] R building question
Dirk Eddelbuettel
edd at debian.org
Mon Oct 1 22:14:34 UTC 2007
On 30 September 2007 at 20:40, David Vernazobres wrote:
| Hi Dirk,
|
| Could you please apply the following patch to your r-base-dev
| package.
| Is it ok to ask you here, or do you prefer a which-list bug against
| r-base-dev ?
|
| Doing so I would be able to add the following line in debian/rules:
| extraInstallFlags=--no-latex or what ever option that I may need for
| building the cran packages.
Good idea, applied to the package. Along with the overdue change of
supporting 'R CMD javareconf' if /usr/bin/java is found. According to Simon,
that is all we need for rJava which I should package for Debian.
| hopefully as you already started preparing the out coming of R 2.6
| (3rd October), it should not take too long, before we could start
| using it...
|
It was a tad late, but I made a new 2.6.0~20070930 release. Let's test that
tomorrow so that I could fix things for R 2.6.0 if need be.
Dirk
| thanks a lot,
| david
|
| --
| Be realistic. Demand the Impossible.
| --- /usr/share/R/debian/r-cran.mk 2007-09-26 17:33:01.000000000 +0200
| +++ /usr/share/R/debian/r-cran.mk-new 2007-09-30 20:21:56.000000000 +0200
| @@ -62,10 +62,11 @@
| ## use this inside xvfb-run if this wrapper is installed
| if test -f /usr/bin/xvfb-run; then \
| $(makeFlagsCall) xvfb-run \
| - R CMD INSTALL -l $(debRlib) --clean . ; \
| + R CMD INSTALL -l $(debRlib) --clean \
| + $(extraInstallFlags) . ; \
| else \
| $(makeFlagsCall) R CMD INSTALL -l $(debRlib) \
| - --clean . ; \
| + --clean $(extraInstallFlags) . ; \
| fi
| ## remove extra files which are present in some packages
| rm -vf $(debRlib)/R.css \
--
Three out of two people have difficulties with fractions.
More information about the pkg-bioc-devel
mailing list