[pkg-bioc] svn commit r351 r351 - in /trunk/packages/qtl/trunk/debian: README.Debian copyright rules watch

Mon Oct 15 09:22:05 UTC 2007

Author: smoe-guest
Date: Mon Oct 15 09:22:05 2007
New Revision: 351

URL: http://svn.debian.org/wsvn/pkg-bioc/?sc=1&rev=351
Log:
Somehow, these files were omitted by svn-inject. Strange.

Added:
    trunk/packages/qtl/trunk/debian/README.Debian
    trunk/packages/qtl/trunk/debian/copyright
    trunk/packages/qtl/trunk/debian/rules   (with props)
    trunk/packages/qtl/trunk/debian/watch

Added: trunk/packages/qtl/trunk/debian/README.Debian
URL: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/debian/README.Debian?rev=351&op=file
==============================================================================

--- trunk/packages/qtl/trunk/debian/README.Debian (added)
+++ trunk/packages/qtl/trunk/debian/README.Debian Mon Oct 15 09:22:05 2007
@@ -0,0 +1,23 @@
+The debian package name was changed fom qtl on the CRAN archives to
+r-cran-qtl.  This best reflects the origin of the package obvious. The
+qtl source are referred to as r/qtl on the upstream web pages
+(http://www.biostat.jhsph.edu/~kbroman/qtl/).
+
+Dirk Eddelbuettel <edd at debian.org> kindly sponsored the initial release
+and performed many smaller changes to streamline the debianisation. I
+very much thank him for this.
+
+The chromosomal linkage analyses for a longer time seemed neglected in
+the bioinformatics community. If the distribution of this package in
+Debian had some positive side effect in improving the communication
+between researchers in bioinformatics and genetics, then we have
+achieved something real good.
+
+When using the package, please cite
+	Broman KW, Wu H, Sen S, Churchill GA (2003)
+	R/qtl: QTL mapping in experimental crosses.
+	Bioinformatics  19:889-890 
+in your publications.
+
+
+-- Steffen Moeller <steffen_moeller at gmx.de>  Wed, 10 Oct 2007 13:43:39 +0200

Added: trunk/packages/qtl/trunk/debian/copyright
URL: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/debian/copyright?rev=351&op=file
==============================================================================
--- trunk/packages/qtl/trunk/debian/copyright (added)
+++ trunk/packages/qtl/trunk/debian/copyright Mon Oct 15 09:22:05 2007
@@ -0,0 +1,24 @@
+This is the Debian GNU/Linux r-cran-qtl package of r/qtl, 
+performing statistical analyses of genomic marker association
+studies. R/qtl was written by Karl W. Broman <kbroman at jhsph.edu>
+with Hao Wu <haowu at jax.org> and is maintained by Karl W. Broman.
+
+This package was created by Steffen Moeller <moeller at pzr.uni-rostock.de>,
+based on work for the r-cran-rodbc package of Dirk Eddelbuettel <edd at debian.org>.
+The sources were downloaded from 
+	http://www.rqtl.org/download
+or
+	http://cran.r-project.org/src/contrib/
+
+The package was renamed from its upstream name 'R/qtl' to 'r-cran-qtl'
+to highlight the fact that is it a package for R within the CRAN archive,
+and to match Debian's convention of lowercase package names.
+
+R/qtl is copyright of Karl W. Broman and released under
+version 2 of the GNU General Public License (GPL).
+
+On a Debian GNU/Linux system, the GPL license is included in the file
+/usr/share/common-licenses/GPL.
+
+The author agreed to the distribution of r/qtl in debian in a personal
+email to the maintainer.

Added: trunk/packages/qtl/trunk/debian/rules
URL: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/debian/rules?rev=351&op=file
==============================================================================
--- trunk/packages/qtl/trunk/debian/rules (added)
+++ trunk/packages/qtl/trunk/debian/rules Mon Oct 15 09:22:05 2007
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-qtl package
+# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+
+include /usr/share/R/debian/r-cran.mk

Propchange: trunk/packages/qtl/trunk/debian/rules
------------------------------------------------------------------------------
    svn:executable = *

Added: trunk/packages/qtl/trunk/debian/watch
URL: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/debian/watch?rev=351&op=file
==============================================================================
--- trunk/packages/qtl/trunk/debian/watch (added)
+++ trunk/packages/qtl/trunk/debian/watch Mon Oct 15 09:22:05 2007
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/qtl_([-0-9\.]*).tar.gz
+


