[pkg-bioc] svn commit r332 r332 - /trunk/tools-ng/list.d/buildDeps.list

Sun Sep 30 12:32:26 UTC 2007

Author: psychedelys-guest
Date: Sun Sep 30 12:32:26 2007
New Revision: 332

URL: http://svn.debian.org/wsvn/pkg-bioc/?sc=1&rev=332
Log:
updated the format of buildDeps: r-dependencies are written with the short name

Modified:
    trunk/tools-ng/list.d/buildDeps.list

Modified: trunk/tools-ng/list.d/buildDeps.list
URL: http://svn.debian.org/wsvn/pkg-bioc/trunk/tools-ng/list.d/buildDeps.list?rev=332&op=diff
==============================================================================

--- trunk/tools-ng/list.d/buildDeps.list (original)
+++ trunk/tools-ng/list.d/buildDeps.list Sun Sep 30 12:32:26 2007
@@ -1,104 +1,104 @@
 ## Build Dependencies
-adehabitat:  r-cran-gpclib 
-arrayImpute: r-cran-vr
+adehabitat:  gpclib 
+arrayImpute: class
 
-bma: r-cran-leaps
-boolean: r-cran-rgenoud
+bma: leaps
+boolean: rgenoud
 
 Cairo: libgtk2.0-dev, libcairo2-dev, x-dev, libx11-dev, libxt-dev
 cairoDevice: libgtk2.0-dev
 
-distr: r-cran-setrng
+distr: setrng
 
-flexclust: r-cran-lattice
+flexclust: lattice
 
-gamlss.tr: r-cran-vr
-gap: r-cran-genetics
+gamlss.tr: class
+gap: genetics
 GDD: libgd2-xpm-dev
-GeneTS:  r-cran-corpcor, r-cran-locfdr 
-genetics:  r-cran-gdata, r-cran-gtools
+GeneTS:  corpcor, locfdr 
+genetics:  gdata, gtools
 gmp: libgmp3-dev 
 gsl: libgsl0-dev
-gplots:  r-cran-gtools,  r-cran-gdata 
+gplots:  gtools,  gdata 
 
 hdf5:  libhdf5-serial-dev, zlib1g-dev 
 
-LDheatmap: r-cran-genetics
+LDheatmap: genetics
 
 MBA: libboost-graph-dev, libboost-dev
-MBESS: r-cran-vr, r-cran-gsl
-multinomrob: r-cran-mvtnorm
+MBESS: class, gsl
+multinomrob: mvtnorm
 
 ncdf: netcdfg-dev
 netCDF: netcdfg-dev
-plotAndPlayGTK: r-cran-lattice
+plotAndPlayGTK: lattice
 
-QRMlib: r-cran-vr, r-cran-lattice, r-cran-cluster 
+QRMlib: class, lattice, cluster 
 
-RBGL:  libboost-graph-dev, r-cran-cluster, r-bioc-ruuid
+RBGL:  libboost-graph-dev, cluster, ruuid
 rcurl: libcurl3-dev
-rgdal:  libgdal1-dev, r-cran-abind, r-cran-pixmap,  r-cran-lattice
+rgdal:  libgdal1-dev, abind, pixmap, lattice
 rimage:  fftw-dev,   libjpeg62-dev 
-Rpad: r-cran-r2html
+Rpad: r2html
 rscalapack:  lam-runtime,  lam4-dev, refblas3-dev, blacs-lam-dev , scalapack-mpich-dev 
 rtiff: libtiff4-dev
 
-SciViews: r-cran-r2html
-SensoMineR: r-cran-ade4, r-cran-cluster 
+SciViews: r2html
+SensoMineR: ade4, cluster 
 SoPhy: libtiff4-dev
-spatstat: r-cran-sm
+spatstat: sm
 
 taskPR: lam4-dev
-trip: r-cran-lattice
+trip: lattice
 
-vars: r-cran-nlme
+vars: nlme
 
 # BioConductor
-arrayQuality: r-bioc-lpe
+arrayQuality: lpe
 Aspell: libaspell-dev
 
-biomaRt:  r-cran-rmysql, r-bioc-biobase
+biomaRt:  rmysql, biobase
 
 CORBA: libidl0
-cosmogui: r-bioc-tkwidgets, r-bioc-widgettools, r-bioc-dyndoc,r-bioc-cosmo, r-bioc-seqlogo,   r-cran-grid
+cosmogui: tkwidgets, widgettools, dyndoc, cosmo, seqlogo, grid
 
 EBImage: libmagick++9-dev
-exprDB:  libdb4.3-dev,   r-bioc-biobase 
-exprexternal:  r-bioc-biobase, r-bioc-externalvector 
+exprDB:  libdb4.3-dev, biobase 
+exprexternal: biobase, externalvector 
 
-genarize:  r-cran-xtable,  r-cran-tkrplot 
-geneplotter: r-cran-rcolorbrewer
-gff3Plotter:  r-bioc-biobase, r-cran-gdd 
-gocluster: r-bioc-biobase
-GGdata: r-bioc-ggtools
-graph:  r-bioc-ruuid, r-cran-cluster 
-gtkWidgets: r-bioc-dyndoc
+genarize:  xtable, tkrplot 
+geneplotter: rcolorbrewer
+gff3Plotter: biobase, gdd 
+gocluster: biobase
+GGdata: ggtools
+graph:  ruuid, cluster 
+gtkWidgets: dyndoc
 
-hexbin:  r-bioc-marray, r-cran-cluster, r-cran-colorspace 
-hopach: r-cran-cluster
+hexbin:  marray, cluster, colorspace 
+hopach: cluster
 
 iSPlot:  RGtk,   gtkDevice
 
-marray:  r-bioc-biobase
-mcrestimate: r-cran-e1071,r-cran-pamr, r-cran-randomforest, r-cran-rcolorbrewer
-multtest:  r-bioc-biobase, r-cran-survival 
-
-pcaMethods:  r-cran-ellipse 
-prism: r-bioc-ebimage
-prada:  r-cran-rrcov
-process: r-bioc-icens
+marray:  biobase
+mcrestimate: e1071, pamr, randomforest, rcolorbrewer
+multtest:  biobase, survival 
+
+pcaMethods:  ellipse 
+prism: ebimage
+prada:  rrcov
+process: icens
 
-Rgraphviz: graphviz-dev, r-cran-rcolorbrewer, libgraphviz3-dev, libltdl3-dev
+Rgraphviz: graphviz-dev, rcolorbrewer, libgraphviz3-dev, libltdl3-dev
 
 rhdf5: libhdf5-serial-dev
 Rredland: librdf0-dev
 Ruuid: libglib1.2-dev, pkg-config 
 
-ScISI: r-bioc-geneplotter
-simplefilter: r-bioc-genefilter
-stam: r-cran-pamr
+ScISI: geneplotter
+simplefilter: genefilter
+stam: pamr
 
-widgetInvoke: r-cran-rgtk2
+widgetInvoke: rgtk2
 
 ## Omegahat
 CORBA: omniidl4


