[Pkg-emboss-commits] r35 - in mirbase/trunk: . debian
Charles Plessy
charles-guest at alioth.debian.org
Wed Apr 25 14:07:48 UTC 2007
Author: charles-guest
Date: 2007-04-25 14:07:47 +0000 (Wed, 25 Apr 2007)
New Revision: 35
Added:
mirbase/trunk/debian/
mirbase/trunk/debian/README.Debian
mirbase/trunk/debian/changelog
mirbase/trunk/debian/compat
mirbase/trunk/debian/control
mirbase/trunk/debian/copyright
mirbase/trunk/debian/dirs
mirbase/trunk/debian/docs
mirbase/trunk/debian/postinst.ex
mirbase/trunk/debian/postrm.ex
mirbase/trunk/debian/preinst.ex
mirbase/trunk/debian/prerm.ex
mirbase/trunk/debian/rules
mirbase/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications to trunk
Property changes on: mirbase/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: mirbase/trunk/debian/README.Debian
===================================================================
--- mirbase/trunk/debian/README.Debian 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/README.Debian 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,6 @@
+mirbase for Debian
+------------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 25 Apr 2007 22:23:47 +0900
Added: mirbase/trunk/debian/changelog
===================================================================
--- mirbase/trunk/debian/changelog 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/changelog 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,6 @@
+mirbase (9.1-1) unstable; urgency=low
+
+ * Initial release (Closes: 420938)
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 25 Apr 2007 22:23:47 +0900
+
Added: mirbase/trunk/debian/compat
===================================================================
--- mirbase/trunk/debian/compat 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/compat 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1 @@
+5
Added: mirbase/trunk/debian/control
===================================================================
--- mirbase/trunk/debian/control 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/control 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,40 @@
+Source: mirbase
+Section: science
+Priority: optional
+Maintainer: Debian EMBOSS Packaging Team <pkg-emboss-devel at lists.alioth.debian.org>
+Uploaders: Charles Plessy <charles-debian-nospam at plessy.org>
+Build-Depends: debhelper (>= 5)
+XS-Vcs-Browser: http://svn.debian.org/wsvn/pkg-emboss/mirbase/trunk/debian
+XS-Vcs-Svn: svn://svn.debian.org/svn/pkg-emboss/mirbase
+Standards-Version: 3.7.2
+
+Package: mirbase
+Architecture: all
+Recommends: emboss, blast2, mysql-server
+Description: The microRNA sequence database
+ The miRBase Sequence Database provides a searchable repository
+ for published microRNA sequences and associated annotation,
+ functionality previously provided by the microRNA Registry. miRBase
+ also contains predicted miRNA target genes in miRBase Targets, and
+ provides a gene naming and nomenclature function in the miRBase
+ Registry.
+ .
+ Release 9.1 of the database contains 4449 entries representing hairpin
+ precursor miRNAs, expressing 4274 mature miRNA products, in primates,
+ rodents, birds, fish, worms, flies, plants and viruses.
+ .
+ If you make use of the data presented here, please cite the following articles
+ in addition to the primary data sources:
+ .
+ miRBase: microRNA sequences, targets and gene nomenclature.
+ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.
+ NAR, 2006, 34, Database Issue, D140-D144
+ .
+ The microRNA Registry.
+ Griffiths-Jones S.
+ NAR, 2004, 32, Database Issue, D109-D111
+ .
+ This package will install the miRBase database for mySQL, EMBOSS, and/or
+ ncbi-blast if you have the corresponding packages installed.
+ .
+ Homepage: http://microrna.sanger.ac.uk/
Added: mirbase/trunk/debian/copyright
===================================================================
--- mirbase/trunk/debian/copyright 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/copyright 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,22 @@
+This package was debianized by Charles Plessy <charles-debian-nospam at plessy.org> on
+Wed, 25 Apr 2007 22:23:47 +0900.
+
+It was downloaded from <fill in http/ftp site>
+
+Upstream Author: <put author(s) name and email here>
+
+Copyright: <put the year(s) of the copyright, and the names of the
+ copyright holder(s) here>
+
+License:
+
+<Put the license of the package here>
+
+
+The Debian packaging is (C) 2007, Charles Plessy <charles-debian-nospam at plessy.org> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
+
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
+
Added: mirbase/trunk/debian/dirs
===================================================================
--- mirbase/trunk/debian/dirs 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/dirs 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,4 @@
+usr/share/mirbase/emboss
+usr/share/mirbase/blast
+usr/share/mirbase/mysql
+etc/emboss/embossrc.d
Added: mirbase/trunk/debian/docs
===================================================================
--- mirbase/trunk/debian/docs 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/docs 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1 @@
+README
Added: mirbase/trunk/debian/postinst.ex
===================================================================
--- mirbase/trunk/debian/postinst.ex 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/postinst.ex 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,41 @@
+#!/bin/sh
+# postinst script for mirbase
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postinst> `configure' <most-recently-configured-version>
+# * <old-postinst> `abort-upgrade' <new version>
+# * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+# <new-version>
+# * <postinst> `abort-remove'
+# * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+# <failed-install-package> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ configure)
+ ;;
+
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: mirbase/trunk/debian/postrm.ex
===================================================================
--- mirbase/trunk/debian/postrm.ex 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/postrm.ex 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,39 @@
+#!/bin/sh
+# postrm script for mirbase
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postrm> `remove'
+# * <postrm> `purge'
+# * <old-postrm> `upgrade' <new-version>
+# * <new-postrm> `failed-upgrade' <old-version>
+# * <new-postrm> `abort-install'
+# * <new-postrm> `abort-install' <old-version>
+# * <new-postrm> `abort-upgrade' <old-version>
+# * <disappearer's-postrm> `disappear' <overwriter>
+# <overwriter-version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ purge|remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
+ ;;
+
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: mirbase/trunk/debian/preinst.ex
===================================================================
--- mirbase/trunk/debian/preinst.ex 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/preinst.ex 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,37 @@
+#!/bin/sh
+# preinst script for mirbase
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <new-preinst> `install'
+# * <new-preinst> `install' <old-version>
+# * <new-preinst> `upgrade' <old-version>
+# * <old-preinst> `abort-upgrade' <new-version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ install|upgrade)
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: mirbase/trunk/debian/prerm.ex
===================================================================
--- mirbase/trunk/debian/prerm.ex 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/prerm.ex 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,40 @@
+#!/bin/sh
+# prerm script for mirbase
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <prerm> `remove'
+# * <old-prerm> `upgrade' <new-version>
+# * <new-prerm> `failed-upgrade' <old-version>
+# * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+# * <deconfigured's-prerm> `deconfigure' `in-favour'
+# <package-being-installed> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ remove|upgrade|deconfigure)
+ ;;
+
+ failed-upgrade)
+ ;;
+
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: mirbase/trunk/debian/rules
===================================================================
--- mirbase/trunk/debian/rules 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/rules 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,53 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+build: build-stamp
+
+build-stamp:
+ dh_testdir
+
+ # Add here commands to compile the package.
+ #$(MAKE)
+ #docbook-to-man debian/mirbase.sgml > mirbase.1
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp configure-stamp
+
+ # Add here commands to clean up after the build process.
+ #-$(MAKE) clean
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+
+ # Add here commands to install the package into debian/mirbase.
+ #$(MAKE) DESTDIR=$(CURDIR)/debian/mirbase install
+
+
+binary-indep: build install
+
+# Build architecture-dependent files here.
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs
+ dh_install
+ dh_installman
+ dh_link
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure
Property changes on: mirbase/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: mirbase/trunk/debian/watch
===================================================================
--- mirbase/trunk/debian/watch 2007-04-25 14:07:24 UTC (rev 34)
+++ mirbase/trunk/debian/watch 2007-04-25 14:07:47 UTC (rev 35)
@@ -0,0 +1,2 @@
+version=3
+ftp://ftp.sanger.ac.uk/pub/mirbase/sequences/CURRENT/THIS_IS_RELEASE_(\d*)_(\d*) debian uupdate
More information about the Pkg-emboss-commits
mailing list