[Pkg-emboss-commits] r71 - in emboss/trunk/debian: . patches
charles-guest at alioth.debian.org
charles-guest at alioth.debian.org
Sun Jul 15 10:08:42 UTC 2007
Author: charles-guest
Date: 2007-07-15 10:08:41 +0000 (Sun, 15 Jul 2007)
New Revision: 71
Removed:
emboss/trunk/debian/linda/
emboss/trunk/debian/lintian/
emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21
emboss/trunk/debian/patches/abiview.c
emboss/trunk/debian/patches/ajgraph
emboss/trunk/debian/patches/dbiflat.c
Modified:
emboss/trunk/debian/README.debian
emboss/trunk/debian/TODO
emboss/trunk/debian/changelog
emboss/trunk/debian/patches/series
Log:
preparing the 5.0.0 release in Debian.
Modified: emboss/trunk/debian/README.debian
===================================================================
--- emboss/trunk/debian/README.debian 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/README.debian 2007-07-15 10:08:41 UTC (rev 71)
@@ -13,18 +13,8 @@
unchanged, /usr/lib/emboss. You can prepend it to your PATH, with a command
such as 'PATH = /usr/lib/emboss:$PATH' with Bourne shells, so that when you run
'cons' or 'pscan', it is always the EMBOSS program. Other programs could be
-renamed in the future, so it is strongly recommended to use this paht in your
+renamed in the future, so it is strongly recommended to use this path in your
scripts.
-This is an experimental package
--------------------------------
-
-The Debian EMBOSS packaging team is currently preparing high quality packages
-for EMBOSS and EMBASSY, and makes preliminary versions such as this one
-available to the public in the experimental section of Debian.
-
-WE DO NOT RECOMMEND TO USE EXPERIMENTAL PACKAGES IN A PRODUCTION ENVIRONMENT.
-
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Sun, 05 Jul 2007 08:03:29 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sun, 15 Jul 2007 19:01:50 +0900
Modified: emboss/trunk/debian/TODO
===================================================================
--- emboss/trunk/debian/TODO 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/TODO 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,7 +1,6 @@
-- Generate automatically manpages from the ACD files.
-- Use libplplot from Debian.
- Use libpcre from Debian (needs #387557)
- Check if external applications use the nucleus or ajax libraries (as a
consequence, emboss-lib would need to be separated into libnucleus4 and
libajax4).
- Design an easy build system for embassy (makefile includes shipped in emboss-data?)
+- Implement tests.
Modified: emboss/trunk/debian/changelog
===================================================================
--- emboss/trunk/debian/changelog 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/changelog 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,9 +1,11 @@
-emboss (4.1.0-2) unstable; urgency=low
+emboss (5.0.0-1) unstable; urgency=low
+ * New upstream version. The list of changes is quite long, so please
+ see /usr/share/doc/emboss/ChangeLog for details.
* Renaming cons and pscan to em_cons and em_pscan, see README.Debian
for more information.
* Moved all the binaries to /usr/lib/emboss. /usr/bin contains only
- symbolic links.
+ symbolic links (Closes : #427439, #427440).
* Makes sure that there is a Makefile befor invoking the clean rule.
* Added /etc/emboss/embossrc.d directory for future modular
configuration.
@@ -15,9 +17,9 @@
http://lists.open-bio.org/pipermail/emboss/2007-May/002941.html
to inded lowercase IDs in EMBL-formatted databases.
* Build-depend on libemboss-acd-perl to generate manpages with
- acd2docbook.pl, written especially for this package.
+ acd2docbook.pl, written especially for this package (Closes: #423938).
- -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 4 Jul 2007 23:54:30 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sun, 15 Jul 2007 18:50:24 +0900
emboss (4.1.0-1) experimental; urgency=low
Deleted: emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21
===================================================================
--- emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,20 +0,0 @@
-The files in this directory are bugfix replacements for files in
-the EMBOSS-4.1.0 distribution. Just drop the replacement files in
-the location shown and redo the 'make install.'
-
-
-Fix 1. EMBOSS-4.1.0/ajax/ajgraph.c
- EMBOSS-4.1.0/ajax/ajgraph.h
- EMBOSS-4.1.0/ajax/ajgraphstruct.h
- EMBOSS-4.1.0/emboss/abiview.c
-
-21 Mar 2007: Fixes a problem with preserving plot titles when graphics
-output is on more than one page. This was added in release 4.1.0 but
-three applications had problems. Prettyplot and banana rescaled their
-graphics badly from page 2, and abiview produced blank pages in
-between real pages. Plot subtitles were slightly smaller after the
-first page.
-
-Also fixes a problem with scaling the sequence in abiview output and a
-problem in abiview with displaying the traces in separate plots.
-
Deleted: emboss/trunk/debian/patches/abiview.c
===================================================================
--- emboss/trunk/debian/patches/abiview.c 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/patches/abiview.c 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,124 +0,0 @@
-This patches comes from ftp://emboss.open-bio.org/pub/EMBOSS/fixes and fixes a
-display problem in abiview.
-
---- ./emboss/abiview.c.old 2007-02-20 18:56:27.000000000 +0900
-+++ ./emboss/abiview.c 2007-06-01 15:05:49.000000000 +0900
-@@ -38,10 +38,11 @@
- ajint nstop,
- const AjPShort basePositions,
- const AjPStr nseq,
-- float tmax, ajint nt);
-+ float tmax, float scale,
-+ ajint nt);
-
- static void abiview_TextDisplay(AjPGraph graphs, ajint nstart, ajint nstop,
-- const AjPStr nseq, float tmax);
-+ const AjPStr nseq, float tmax, float scale);
-
- static AjBool abiview_drawbase(const char* res, const AjPStr baseN);
- static ajint abiview_getResColour(char B);
-@@ -112,6 +113,7 @@
- /* BYTE[i] is a byte mask for byte i */
- const ajlong BYTE[] = { 0x000000ff };
-
-+ float scale = 1.0;
-
- ajGraphInit("abiview", argc, argv);
-
-@@ -254,12 +256,13 @@
- /* Sequence text display */
- if(dseq)
- {
-+ scale = (40.0 / (float) window);
- if(!overlay)
- gd5 = abiview_graphTextDisplay(graphs,nstart,nstop,
- basePositions,nseq,
-- tmax,strace);
-+ tmax,scale, strace);
- else
-- abiview_TextDisplay(graphs,nstart,nstop,nseq,tmax);
-+ abiview_TextDisplay(graphs,nstart,nstop,nseq,tmax, scale);
- }
-
- strace = ntrace;
-@@ -283,9 +286,6 @@
- else
- ajGraphClear(graphs); /* free seq text mem */
- }
--
--
-- ajGraphNewPage(graphs,ajFalse); /* display new page */
- }
-
- nstart = nstop-1;
-@@ -300,9 +300,6 @@
- if(dseq && overlay)
- ajGraphClear(graphs); /* free seq text mem */
-
-- if(dseq && !overlay)
-- ajGraphPlpDataDel(&gd5); /* free seq text mem */
--
- ajGraphxyDel(&graphs);
- ajInt2dDel(&trace);
- ajShortDel(&basePositions);
-@@ -410,6 +407,7 @@
- ** @param [r] basePositions [const AjPShort] Base positions
- ** @param [r] nseq [const AjPStr] Sequence number
- ** @param [r] tmax [float] Maximum
-+** @param [r] scale [float] Character scale
- ** @param [r] nt [ajint] Nt data
- ** @return [AjPGraphPlpData] graph data object containing the sequence text
- **
-@@ -419,7 +417,7 @@
- ajint nstop,
- const AjPShort basePositions,
- const AjPStr nseq,
-- float tmax, ajint nt)
-+ float tmax, float scale, ajint nt)
- {
- ajint i;
- ajint colres;
-@@ -430,14 +428,16 @@
- res[1]='\0';
-
- /* create graph data object */
-+
- gdata = ajGraphPlpDataNewI(ajShortGet(basePositions,nstop-1)-nt);
-
- for(i=nstart;i<nstop;i++)
- {
- *res = ajStrGetCharPos(nseq,i);
- colres = abiview_getResColour(*res);
-- ajGraphPlpDataAddText(gdata,(float)i+(float)1.,tmax+(float)75.,colres,
-- res);
-+ ajGraphPlpDataAddTextScale(gdata,(float)i+(float)1.,
-+ tmax+(float)75.,colres, scale,
-+ res);
- }
-
- ajGraphPlpDataSetMaxMin(gdata,(float)nstart+1,
-@@ -462,12 +462,13 @@
- ** @param [r] nstop [ajint] Stop
- ** @param [r] nseq [const AjPStr] Sequence number
- ** @param [r] tmax [float] Maximum
-+** @param [r] scale [float] Character scale
- ** @return [void]
- **
- ******************************************************************************/
-
- static void abiview_TextDisplay(AjPGraph graphs, ajint nstart, ajint nstop,
-- const AjPStr nseq, float tmax)
-+ const AjPStr nseq, float tmax, float scale)
- {
- ajint i;
- ajint colres;
-@@ -479,7 +480,8 @@
- {
- *res = ajStrGetCharPos(nseq,i);
- colres = abiview_getResColour(*res);
-- ajGraphAddText(graphs,(float)i+(float)1.,tmax+(float)30.,colres,res);
-+ ajGraphAddTextScale(graphs,(float)i+(float)1.,tmax+(float)30.,
-+ colres, scale, res);
- }
-
- return;
Deleted: emboss/trunk/debian/patches/ajgraph
===================================================================
--- emboss/trunk/debian/patches/ajgraph 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/patches/ajgraph 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,384 +0,0 @@
-These patches come from ftp://emboss.open-bio.org/pub/EMBOSS/fixes and fix a
-display problem in banana and prettyplot. -- Charles
-
-diff -u ajax.old/ajgraph.c ajax/ajgraph.c
---- ./ajax.old/ajgraph.c 2007-02-20 23:45:38.000000000 +0900
-+++ ./ajax/ajgraph.c 2007-06-01 15:10:46.000000000 +0900
-@@ -503,6 +503,7 @@
-
- static ajint currentfgcolour = BLACK; /* Use ajGraphSetFore to change */
- static ajint currentbgwhite = 1; /* By default use a white background */
-+static float currentcharsize = 4.0; /* Use ajGraphSetCharSize to change */
- static float currentcharscale = 1.0; /* Use ajGraphSetCharScale to change */
- static ajint currentlinestyle = 1; /* Use ajGraphSetLineStyle to change*/
- static ajint currentfillpattern = 1; /* Use ajGraphSetLineStyle to change*/
-@@ -540,6 +541,7 @@
- {
- plschr((PLFLT)size, 1.0);
- currentcharscale = 1.0;
-+ currentcharsize = size;
- }
-
-
-@@ -1088,11 +1090,14 @@
-
- if(graphData)
- {
-+ ajDebug("GraphClose deleting graphData '%F' '%S'.'%S'\n",
-+ graphData->File, graphData->FName, graphData->Ext);
- ajListstrDel(&graphData->List);
- ajFileClose(&graphData->File);
- ajStrDel(&graphData->FName);
- ajStrDel(&graphData->Ext);
- AJFREE(graphData);
-+ ajDebug("=g= plend()\n");
- plend();
- }
- else
-@@ -1265,7 +1270,8 @@
- ajDebug("=g= plmtex('t', 2.5, 0.5, 0.5, '%S') [title]\n", tmpstr);
- if(ajStrGetLen(tmpstr)) {
- fold = ajGraphSetCharScale(1.0);
-- ajDebug("GraphLabelTitle title fold: %.3f\n", fold);
-+ ajDebug("GraphLabelTitle title fold: %.3f size: %.3f scale %.3f\n",
-+ fold, currentcharsize, currentcharscale);
- plmtex("t", (PLFLT) 4.0, (PLFLT) 0.5, (PLFLT) 0.5,
- ajStrGetPtr(tmpstr));
- fold = ajGraphSetCharScale(fold);
-@@ -1281,8 +1287,9 @@
- if(ajStrGetLen(tmpstr))
- {
- fold = ajGraphSetCharScale(1.0);
-- ajGraphSetCharScale(fold/(float)2.0);
-- ajDebug("GraphLabelTitle subtitle fold: %.3f\n", fold);
-+ ajGraphSetCharScale(0.5);
-+ ajDebug("GraphLabelTitle subtitle fold: %.3f size: %.3f scale %.3f\n",
-+ fold, currentcharsize, currentcharscale);
- plmtex("t", (PLFLT) 5.0, (PLFLT) 0.5, (PLFLT) 0.5,
- ajStrGetPtr(tmpstr));
- fold = ajGraphSetCharScale(fold);
-@@ -1421,6 +1428,7 @@
- thys->plplot->xend = xmax;
- thys->plplot->ystart = ymin;
- thys->plplot->yend = ymax;
-+ thys->plplot->windowset = ajTrue;
- }
- GraphSetWin(xmin, xmax, ymin, ymax);
-
-@@ -1444,6 +1452,7 @@
- void ajGraphNewPage(AjPGraph thys, AjBool resetdefaults)
- {
- ajint old;
-+ ajint cold;
- float fold;
-
-
-@@ -1465,10 +1474,8 @@
- else
- {
- /* pladv resets every thing so need */
-- /* to get the old copy */
-- old = ajGraphSetFore(BLACK);
-- /* then set in again */
-- ajGraphSetFore(old);
-+ /* to get the old copies */
-+ cold = ajGraphSetFore(BLACK);
- fold = ajGraphSetCharScale(0.0);
- old = ajGraphSetLineStyle(0);
- ajGraphTrace(thys);
-@@ -1479,14 +1486,16 @@
- ajStrGetPtr(thys->plplot->title) : " "),
- ((thys->plplot->flags & AJGRAPH_SUBTITLE) ?
- ajStrGetPtr(thys->plplot->subtitle) : " "));
-- if(thys->plplot->minmaxcalc)
-+
-+ if(thys->plplot->windowset)
- GraphSetWin(thys->plplot->xstart, thys->plplot->xend,
- thys->plplot->ystart, thys->plplot->yend);
- else
- GraphSetWin(0.0, 480.0,
- 0.0, 640.0);
--
- }
-+ /* then set it again */
-+ ajGraphSetFore(cold);
- ajGraphSetCharScale(fold);
- ajGraphSetLineStyle(old);
- }
-@@ -1495,8 +1504,6 @@
- }
-
-
--
--
- /* @func ajGraphCloseWin ******************************************************
- **
- ** Close current window.
-@@ -3243,6 +3250,31 @@
-
-
-
-+/* @func ajGraphSetCharSize ***************************************************
-+**
-+** Set the character size factor
-+**
-+** @param [r] size [float] character size.
-+** @return [float] the previous character size factor.
-+** @@
-+******************************************************************************/
-+
-+float ajGraphSetCharSize(float size)
-+{
-+ float oldsize;
-+
-+ oldsize = currentcharsize;
-+ if(size)
-+ {
-+ currentcharsize = size;
-+ plschr((PLFLT)size, 1.0);
-+ }
-+ return oldsize;
-+}
-+
-+
-+
-+
- /* @funcstatic GraphCheckPoints ***********************************************
- **
- ** Prints a list of data points from two floating point arrays.
-@@ -4592,8 +4624,9 @@
- graphdata = (thys->plplot->graphs)[i];
- if (graphdata)
- {
-- ajDebug("ajGraphxyDel graphs[%d] xcalc:%B ycalc:%B\n",
-- i, graphdata->xcalc, graphdata->ycalc);
-+ ajDebug("ajGraphxyDel graphs[%d] xcalc:%B ycalc:%B x:%x y:%x\n",
-+ i, graphdata->xcalc, graphdata->ycalc,
-+ graphdata->x, graphdata->y);
-
- if(!graphdata->xcalc)
- AJFREE(graphdata->x);
-@@ -6170,6 +6203,62 @@
- Obj->yy1 = yy1;
- Obj->yy2 = 0.0;
- Obj->colour = colour;
-+ Obj->scale = 0.0;
-+ Obj->next = 0;
-+
-+ return;
-+}
-+
-+
-+
-+
-+/* @func ajGraphAddTextScale **************************************************
-+**
-+** Add text to be drawn when the graph is plotted.
-+**
-+** @param [u] thys [AjPGraph] Graph object
-+** @param [r] xx1 [float] Start x position
-+** @param [r] yy1 [float] Start y position
-+** @param [r] colour [ajint] Colour code (see PLPLOT)
-+** @param [r] scale [float] Character scale (0.0 to use the default)
-+** @param [r] text [const char*] Text
-+**
-+** @return [void]
-+** @@
-+******************************************************************************/
-+
-+void ajGraphAddTextScale(AjPGraph thys, float xx1, float yy1,
-+ ajint colour, float scale, const char *text)
-+{
-+ AjPGraphPlpObj Obj;
-+
-+ if (!thys->plplot)
-+ return;
-+ if(!thys->plplot->Obj)
-+ {
-+ AJNEW((thys->plplot->Obj));
-+ Obj = thys->plplot->Obj;
-+ }
-+ else
-+ {
-+ Obj = thys->plplot->Obj;
-+ while(Obj->next)
-+ Obj = Obj->next;
-+ AJNEW(Obj->next);
-+ Obj = Obj->next;
-+ }
-+
-+ ++thys->plplot->numofobjects;
-+
-+
-+ Obj->type = TEXT;
-+ Obj->text = ajStrNewC(text);
-+ Obj->xx1 = xx1;
-+ Obj->xx2 = 0.0;
-+ Obj->yy1 = yy1;
-+ Obj->yy2 = 0.0;
-+ Obj->colour = colour;
-+ Obj->scale = scale;
- Obj->next = 0;
-
- return;
-@@ -6390,6 +6479,7 @@
- {
- AjPGraphPlpObj Obj;
- ajint temp;
-+ float cold = 1.0;
-
- /* graphdata : calls ajGraphLine etc. */
-
-@@ -6418,10 +6508,14 @@
- }
- else if(Obj->type == TEXT )
- {
-+ if(Obj->scale)
-+ cold = ajGraphSetCharScale(Obj->scale);
- temp = ajGraphSetFore(Obj->colour);
- ajGraphTextStart(Obj->xx1, Obj->yy1,
- ajStrGetPtr(Obj->text));
- ajGraphSetFore(temp);
-+ if(Obj->scale)
-+ ajGraphSetCharScale(cold);
- }
- else if(Obj->type == LINE)
- {
-@@ -6584,6 +6678,62 @@
- Obj->yy1 = yy1;
- Obj->yy2 = 0.0;
- Obj->colour = colour;
-+ Obj->scale = 0.0;
-+ Obj->next = 0;
-+
-+ return;
-+}
-+
-+
-+
-+
-+/* @func ajGraphPlpDataAddTextScale *******************************************
-+**
-+** Add Text to be drawn when the graph is plotted.
-+**
-+** @param [u] graphdata [AjPGraphPlpData] Graph data object
-+** @param [r] xx1 [float] Start x position
-+** @param [r] yy1 [float] Start y position
-+** @param [r] colour [ajint] Colour code (see PLPLOT)
-+** @param [r] scale [float] Character scale (0.0 to use the default)
-+** @param [r] text [const char*] Text to add
-+**
-+** @return [void]
-+** @@
-+******************************************************************************/
-+
-+void ajGraphPlpDataAddTextScale(AjPGraphPlpData graphdata,
-+ float xx1, float yy1,
-+ ajint colour, float scale, const char *text)
-+{
-+ AjPGraphPlpObj Obj;
-+
-+ if(!graphdata->Obj)
-+ {
-+ AJNEW((graphdata->Obj));
-+ Obj = graphdata->Obj;
-+ }
-+ else /* cycle through till NULL found */
-+ {
-+ Obj = graphdata->Obj;
-+ while(Obj->next)
-+ Obj = Obj->next;
-+ AJNEW(Obj->next);
-+ Obj = Obj->next;
-+ }
-+
-+ ++graphdata->numofobjects;
-+
-+
-+ Obj->type = TEXT;
-+ Obj->text = 0;
-+ ajStrAssignEmptyC(&Obj->text,text);
-+ Obj->xx1 = xx1;
-+ Obj->xx2 = 0.0;
-+ Obj->yy1 = yy1;
-+ Obj->yy2 = 0.0;
-+ Obj->colour = colour;
-+ Obj->scale = scale;
- Obj->next = 0;
-
- return;
-diff -u ajax.old/ajgraph.h ajax/ajgraph.h
---- ./ajax.old/ajgraph.h 2007-01-31 21:44:35.000000000 +0900
-+++ ./ajax/ajgraph.h 2007-06-01 15:10:41.000000000 +0900
-@@ -96,6 +96,10 @@
- void ajGraphPlpDataAddText (AjPGraphPlpData graphs,
- float xx1, float yy1,
- ajint colour, const char *text);
-+void ajGraphPlpDataAddTextScale (AjPGraphPlpData graphs,
-+ float xx1, float yy1,
-+ ajint colour, float scale,
-+ const char *text);
- void ajGraphPlpDataSetMaxMin (AjPGraphPlpData graphdata, float xmin,
- float xmax, float ymin, float ymax);
- void ajGraphArrayMaxMin(const float *array, ajint npoints, float *min,
-@@ -145,11 +149,15 @@
- AjPGraph ajGraphNew (void);
- void ajGraphNewPage (AjPGraph thys, AjBool resetdefaults);
- void ajGraphAddLine (AjPGraph thys, float xx1, float yy1,
-- float xx2, float yy2, ajint colour);
-+ float xx2, float yy2, ajint colour);
- void ajGraphAddRect (AjPGraph thys, float xx1, float yy1,
-- float xx2, float yy2, ajint colour, ajint fill);
-+ float xx2, float yy2, ajint colour,
-+ ajint fill);
- void ajGraphAddText (AjPGraph thys, float xx1, float yy1,
- ajint colour, const char *text);
-+void ajGraphAddTextScale (AjPGraph thys, float xx1, float yy1,
-+ ajint colour, float scale,
-+ const char *text);
- void ajGraphPlpDataDel(AjPGraphPlpData *thys);
- void ajGraphOpen (AjPGraph thys, PLFLT xmin, PLFLT xmax,
- PLFLT ymin, PLFLT ymax, ajint flags);
-@@ -167,6 +175,7 @@
- void ajGraphSetBackBlack (void);
- void ajGraphSetBackWhite (void);
- float ajGraphSetCharScale (float scale);
-+float ajGraphSetCharSize(float size);
- void ajGraphSetDesc(AjPGraph thys, const AjPStr title);
- void ajGraphSetDevice(const AjPGraph thys);
- void ajGraphSetDir(AjPGraph thys, const AjPStr txt);
-diff -u ajax.old/ajgraphstruct.h ajax/ajgraphstruct.h
---- ./ajax.old/ajgraphstruct.h 2007-02-10 03:30:58.000000000 +0900
-+++ ./ajax/ajgraphstruct.h 2007-06-01 15:10:35.000000000 +0900
-@@ -17,6 +17,7 @@
- ** @attr xx2 [float] x end
- ** @attr yy1 [float] y start
- ** @attr yy2 [float] y end
-+** @attr scale [float] scale for text (0.0 to use the default)
- ** @attr next [struct AjSGraphPlpObj*] link to next object in the list
- ** @@
- ******************************************************************************/
-@@ -29,6 +30,7 @@
- float xx2;
- float yy1;
- float yy2;
-+ float scale;
- struct AjSGraphPlpObj *next;
- } AjOGraphPlpObj;
- #define AjPGraphPlpObj AjOGraphPlpObj*
-@@ -107,6 +109,7 @@
- ** @attr yend [float] Last y value to plot
- ** @attr ready [AjBool] Set by plplot device init
- ** @attr minmaxcalc [AjBool] Set true when (xy)start/end are set
-+** @attr windowset [AjBool] Set true when (xy) window coordinates are set
- ** @attr isdata [AjBool] True for a data type graph
- ** @attr displaytype [ajint] Displaytype index to graphType
- ** @attr desc [AjPStr] Plot description, used to set default title
-@@ -135,6 +138,7 @@
- float yend;
- AjBool ready;
- AjBool minmaxcalc;
-+ AjBool windowset;
- AjBool isdata;
- ajint displaytype;
- AjPStr desc;
Deleted: emboss/trunk/debian/patches/dbiflat.c
===================================================================
--- emboss/trunk/debian/patches/dbiflat.c 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/patches/dbiflat.c 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,13 +0,0 @@
-This patch comes from Peter Rice and is needded for indexing EMBL-format
-databases whith lowercase IDs.
-http://lists.open-bio.org/pipermail/emboss/2007-May/002941.html
---- ./emboss/dbiflat.c.old 2007-06-01 15:00:55.000000000 +0900
-+++ ./emboss/dbiflat.c 2007-06-01 15:03:59.000000000 +0900
-@@ -739,6 +739,7 @@
- {
- ajRegExec(regEmblId, rline);
- ajRegSubI(regEmblId, 1, myid);
-+ ajStrFmtUpper(myid);
- ajDebug("++id '%S'\n", *myid);
- ajRegSubI(regEmblId, 3, &tmpfd);
- if(svnfield >= 0 && ajStrGetLen(tmpfd))
Modified: emboss/trunk/debian/patches/series
===================================================================
--- emboss/trunk/debian/patches/series 2007-07-15 07:09:06 UTC (rev 70)
+++ emboss/trunk/debian/patches/series 2007-07-15 10:08:41 UTC (rev 71)
@@ -1,3 +0,0 @@
-abiview.c
-ajgraph
-dbiflat.c
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