[Pkg-emboss-commits] r52 - in emboss/trunk/debian: . patches
charles-guest at alioth.debian.org
charles-guest at alioth.debian.org
Mon Jun 4 12:05:53 UTC 2007
Author: charles-guest
Date: 2007-06-04 12:05:53 +0000 (Mon, 04 Jun 2007)
New Revision: 52
Added:
emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21
emboss/trunk/debian/patches/abiview.c
emboss/trunk/debian/patches/ajgraph
emboss/trunk/debian/patches/dbiflat.c
emboss/trunk/debian/patches/series
Removed:
emboss/trunk/debian/patches/00list
Modified:
emboss/trunk/debian/changelog
emboss/trunk/debian/control
emboss/trunk/debian/rules
Log:
Swiching to quilt; applying latest fixes
Modified: emboss/trunk/debian/changelog
===================================================================
--- emboss/trunk/debian/changelog 2007-05-30 02:08:16 UTC (rev 51)
+++ emboss/trunk/debian/changelog 2007-06-04 12:05:53 UTC (rev 52)
@@ -2,8 +2,15 @@
* Added /etc/emboss/embossrc.d directory for future modular
configuration.
+ * Swiched from dpatch to quilt
+ * Applying latest fixes from ftp://emboss.open-bio.org/pub/EMBOSS/fixes
+ - Solves a display problem with abiview.
+ - Solves a display problem with banana and prettyplot.
+ * Applying a dbiflat.c fix from
+ http://lists.open-bio.org/pipermail/emboss/2007-May/002941.html
+ to inded lowercase IDs in EMBL-formatted databases.
- -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 25 Apr 2007 22:57:20 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Mon, 4 Jun 2007 13:28:33 +0900
emboss (4.1.0-1) experimental; urgency=low
Modified: emboss/trunk/debian/control
===================================================================
--- emboss/trunk/debian/control 2007-05-30 02:08:16 UTC (rev 51)
+++ emboss/trunk/debian/control 2007-06-04 12:05:53 UTC (rev 52)
@@ -3,7 +3,7 @@
Priority: optional
Maintainer: Debian EMBOSS Packaging Team <pkg-emboss-devel at lists.alioth.debian.org>
Uploaders: Charles Plessy <charles-debian-nospam at plessy.org>, Matt Hope <dopey at debian.org>, Nelson A. de Oliveira <naoliv at debian.org>
-Build-Depends: debhelper (>= 5), dpatch, libx11-dev, x-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev
+Build-Depends: debhelper (>= 5), quilt, libx11-dev, x-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev
XS-Vcs-Browser: http://svn.debian.org/wsvn/pkg-emboss/emboss/trunk/debian
XS-Vcs-Svn: svn://svn.debian.org/svn/pkg-emboss/emboss/
Standards-Version: 3.7.2
Deleted: emboss/trunk/debian/patches/00list
===================================================================
--- emboss/trunk/debian/patches/00list 2007-05-30 02:08:16 UTC (rev 51)
+++ emboss/trunk/debian/patches/00list 2007-06-04 12:05:53 UTC (rev 52)
@@ -1 +0,0 @@
-
Added: emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21
===================================================================
--- emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21 (rev 0)
+++ emboss/trunk/debian/patches/README.fixes.upstream.2007-03-21 2007-06-04 12:05:53 UTC (rev 52)
@@ -0,0 +1,20 @@
+The files in this directory are bugfix replacements for files in
+the EMBOSS-4.1.0 distribution. Just drop the replacement files in
+the location shown and redo the 'make install.'
+
+
+Fix 1. EMBOSS-4.1.0/ajax/ajgraph.c
+ EMBOSS-4.1.0/ajax/ajgraph.h
+ EMBOSS-4.1.0/ajax/ajgraphstruct.h
+ EMBOSS-4.1.0/emboss/abiview.c
+
+21 Mar 2007: Fixes a problem with preserving plot titles when graphics
+output is on more than one page. This was added in release 4.1.0 but
+three applications had problems. Prettyplot and banana rescaled their
+graphics badly from page 2, and abiview produced blank pages in
+between real pages. Plot subtitles were slightly smaller after the
+first page.
+
+Also fixes a problem with scaling the sequence in abiview output and a
+problem in abiview with displaying the traces in separate plots.
+
Added: emboss/trunk/debian/patches/abiview.c
===================================================================
--- emboss/trunk/debian/patches/abiview.c (rev 0)
+++ emboss/trunk/debian/patches/abiview.c 2007-06-04 12:05:53 UTC (rev 52)
@@ -0,0 +1,124 @@
+This patches comes from ftp://emboss.open-bio.org/pub/EMBOSS/fixes and fixes a
+display problem in abiview.
+
+--- ./emboss/abiview.c.old 2007-02-20 18:56:27.000000000 +0900
++++ ./emboss/abiview.c 2007-06-01 15:05:49.000000000 +0900
+@@ -38,10 +38,11 @@
+ ajint nstop,
+ const AjPShort basePositions,
+ const AjPStr nseq,
+- float tmax, ajint nt);
++ float tmax, float scale,
++ ajint nt);
+
+ static void abiview_TextDisplay(AjPGraph graphs, ajint nstart, ajint nstop,
+- const AjPStr nseq, float tmax);
++ const AjPStr nseq, float tmax, float scale);
+
+ static AjBool abiview_drawbase(const char* res, const AjPStr baseN);
+ static ajint abiview_getResColour(char B);
+@@ -112,6 +113,7 @@
+ /* BYTE[i] is a byte mask for byte i */
+ const ajlong BYTE[] = { 0x000000ff };
+
++ float scale = 1.0;
+
+ ajGraphInit("abiview", argc, argv);
+
+@@ -254,12 +256,13 @@
+ /* Sequence text display */
+ if(dseq)
+ {
++ scale = (40.0 / (float) window);
+ if(!overlay)
+ gd5 = abiview_graphTextDisplay(graphs,nstart,nstop,
+ basePositions,nseq,
+- tmax,strace);
++ tmax,scale, strace);
+ else
+- abiview_TextDisplay(graphs,nstart,nstop,nseq,tmax);
++ abiview_TextDisplay(graphs,nstart,nstop,nseq,tmax, scale);
+ }
+
+ strace = ntrace;
+@@ -283,9 +286,6 @@
+ else
+ ajGraphClear(graphs); /* free seq text mem */
+ }
+-
+-
+- ajGraphNewPage(graphs,ajFalse); /* display new page */
+ }
+
+ nstart = nstop-1;
+@@ -300,9 +300,6 @@
+ if(dseq && overlay)
+ ajGraphClear(graphs); /* free seq text mem */
+
+- if(dseq && !overlay)
+- ajGraphPlpDataDel(&gd5); /* free seq text mem */
+-
+ ajGraphxyDel(&graphs);
+ ajInt2dDel(&trace);
+ ajShortDel(&basePositions);
+@@ -410,6 +407,7 @@
+ ** @param [r] basePositions [const AjPShort] Base positions
+ ** @param [r] nseq [const AjPStr] Sequence number
+ ** @param [r] tmax [float] Maximum
++** @param [r] scale [float] Character scale
+ ** @param [r] nt [ajint] Nt data
+ ** @return [AjPGraphPlpData] graph data object containing the sequence text
+ **
+@@ -419,7 +417,7 @@
+ ajint nstop,
+ const AjPShort basePositions,
+ const AjPStr nseq,
+- float tmax, ajint nt)
++ float tmax, float scale, ajint nt)
+ {
+ ajint i;
+ ajint colres;
+@@ -430,14 +428,16 @@
+ res[1]='\0';
+
+ /* create graph data object */
++
+ gdata = ajGraphPlpDataNewI(ajShortGet(basePositions,nstop-1)-nt);
+
+ for(i=nstart;i<nstop;i++)
+ {
+ *res = ajStrGetCharPos(nseq,i);
+ colres = abiview_getResColour(*res);
+- ajGraphPlpDataAddText(gdata,(float)i+(float)1.,tmax+(float)75.,colres,
+- res);
++ ajGraphPlpDataAddTextScale(gdata,(float)i+(float)1.,
++ tmax+(float)75.,colres, scale,
++ res);
+ }
+
+ ajGraphPlpDataSetMaxMin(gdata,(float)nstart+1,
+@@ -462,12 +462,13 @@
+ ** @param [r] nstop [ajint] Stop
+ ** @param [r] nseq [const AjPStr] Sequence number
+ ** @param [r] tmax [float] Maximum
++** @param [r] scale [float] Character scale
+ ** @return [void]
+ **
+ ******************************************************************************/
+
+ static void abiview_TextDisplay(AjPGraph graphs, ajint nstart, ajint nstop,
+- const AjPStr nseq, float tmax)
++ const AjPStr nseq, float tmax, float scale)
+ {
+ ajint i;
+ ajint colres;
+@@ -479,7 +480,8 @@
+ {
+ *res = ajStrGetCharPos(nseq,i);
+ colres = abiview_getResColour(*res);
+- ajGraphAddText(graphs,(float)i+(float)1.,tmax+(float)30.,colres,res);
++ ajGraphAddTextScale(graphs,(float)i+(float)1.,tmax+(float)30.,
++ colres, scale, res);
+ }
+
+ return;
Added: emboss/trunk/debian/patches/ajgraph
===================================================================
--- emboss/trunk/debian/patches/ajgraph (rev 0)
+++ emboss/trunk/debian/patches/ajgraph 2007-06-04 12:05:53 UTC (rev 52)
@@ -0,0 +1,384 @@
+These patches come from ftp://emboss.open-bio.org/pub/EMBOSS/fixes and fix a
+display problem in banana and prettyplot. -- Charles
+
+diff -u ajax.old/ajgraph.c ajax/ajgraph.c
+--- ./ajax.old/ajgraph.c 2007-02-20 23:45:38.000000000 +0900
++++ ./ajax/ajgraph.c 2007-06-01 15:10:46.000000000 +0900
+@@ -503,6 +503,7 @@
+
+ static ajint currentfgcolour = BLACK; /* Use ajGraphSetFore to change */
+ static ajint currentbgwhite = 1; /* By default use a white background */
++static float currentcharsize = 4.0; /* Use ajGraphSetCharSize to change */
+ static float currentcharscale = 1.0; /* Use ajGraphSetCharScale to change */
+ static ajint currentlinestyle = 1; /* Use ajGraphSetLineStyle to change*/
+ static ajint currentfillpattern = 1; /* Use ajGraphSetLineStyle to change*/
+@@ -540,6 +541,7 @@
+ {
+ plschr((PLFLT)size, 1.0);
+ currentcharscale = 1.0;
++ currentcharsize = size;
+ }
+
+
+@@ -1088,11 +1090,14 @@
+
+ if(graphData)
+ {
++ ajDebug("GraphClose deleting graphData '%F' '%S'.'%S'\n",
++ graphData->File, graphData->FName, graphData->Ext);
+ ajListstrDel(&graphData->List);
+ ajFileClose(&graphData->File);
+ ajStrDel(&graphData->FName);
+ ajStrDel(&graphData->Ext);
+ AJFREE(graphData);
++ ajDebug("=g= plend()\n");
+ plend();
+ }
+ else
+@@ -1265,7 +1270,8 @@
+ ajDebug("=g= plmtex('t', 2.5, 0.5, 0.5, '%S') [title]\n", tmpstr);
+ if(ajStrGetLen(tmpstr)) {
+ fold = ajGraphSetCharScale(1.0);
+- ajDebug("GraphLabelTitle title fold: %.3f\n", fold);
++ ajDebug("GraphLabelTitle title fold: %.3f size: %.3f scale %.3f\n",
++ fold, currentcharsize, currentcharscale);
+ plmtex("t", (PLFLT) 4.0, (PLFLT) 0.5, (PLFLT) 0.5,
+ ajStrGetPtr(tmpstr));
+ fold = ajGraphSetCharScale(fold);
+@@ -1281,8 +1287,9 @@
+ if(ajStrGetLen(tmpstr))
+ {
+ fold = ajGraphSetCharScale(1.0);
+- ajGraphSetCharScale(fold/(float)2.0);
+- ajDebug("GraphLabelTitle subtitle fold: %.3f\n", fold);
++ ajGraphSetCharScale(0.5);
++ ajDebug("GraphLabelTitle subtitle fold: %.3f size: %.3f scale %.3f\n",
++ fold, currentcharsize, currentcharscale);
+ plmtex("t", (PLFLT) 5.0, (PLFLT) 0.5, (PLFLT) 0.5,
+ ajStrGetPtr(tmpstr));
+ fold = ajGraphSetCharScale(fold);
+@@ -1421,6 +1428,7 @@
+ thys->plplot->xend = xmax;
+ thys->plplot->ystart = ymin;
+ thys->plplot->yend = ymax;
++ thys->plplot->windowset = ajTrue;
+ }
+ GraphSetWin(xmin, xmax, ymin, ymax);
+
+@@ -1444,6 +1452,7 @@
+ void ajGraphNewPage(AjPGraph thys, AjBool resetdefaults)
+ {
+ ajint old;
++ ajint cold;
+ float fold;
+
+
+@@ -1465,10 +1474,8 @@
+ else
+ {
+ /* pladv resets every thing so need */
+- /* to get the old copy */
+- old = ajGraphSetFore(BLACK);
+- /* then set in again */
+- ajGraphSetFore(old);
++ /* to get the old copies */
++ cold = ajGraphSetFore(BLACK);
+ fold = ajGraphSetCharScale(0.0);
+ old = ajGraphSetLineStyle(0);
+ ajGraphTrace(thys);
+@@ -1479,14 +1486,16 @@
+ ajStrGetPtr(thys->plplot->title) : " "),
+ ((thys->plplot->flags & AJGRAPH_SUBTITLE) ?
+ ajStrGetPtr(thys->plplot->subtitle) : " "));
+- if(thys->plplot->minmaxcalc)
++
++ if(thys->plplot->windowset)
+ GraphSetWin(thys->plplot->xstart, thys->plplot->xend,
+ thys->plplot->ystart, thys->plplot->yend);
+ else
+ GraphSetWin(0.0, 480.0,
+ 0.0, 640.0);
+-
+ }
++ /* then set it again */
++ ajGraphSetFore(cold);
+ ajGraphSetCharScale(fold);
+ ajGraphSetLineStyle(old);
+ }
+@@ -1495,8 +1504,6 @@
+ }
+
+
+-
+-
+ /* @func ajGraphCloseWin ******************************************************
+ **
+ ** Close current window.
+@@ -3243,6 +3250,31 @@
+
+
+
++/* @func ajGraphSetCharSize ***************************************************
++**
++** Set the character size factor
++**
++** @param [r] size [float] character size.
++** @return [float] the previous character size factor.
++** @@
++******************************************************************************/
++
++float ajGraphSetCharSize(float size)
++{
++ float oldsize;
++
++ oldsize = currentcharsize;
++ if(size)
++ {
++ currentcharsize = size;
++ plschr((PLFLT)size, 1.0);
++ }
++ return oldsize;
++}
++
++
++
++
+ /* @funcstatic GraphCheckPoints ***********************************************
+ **
+ ** Prints a list of data points from two floating point arrays.
+@@ -4592,8 +4624,9 @@
+ graphdata = (thys->plplot->graphs)[i];
+ if (graphdata)
+ {
+- ajDebug("ajGraphxyDel graphs[%d] xcalc:%B ycalc:%B\n",
+- i, graphdata->xcalc, graphdata->ycalc);
++ ajDebug("ajGraphxyDel graphs[%d] xcalc:%B ycalc:%B x:%x y:%x\n",
++ i, graphdata->xcalc, graphdata->ycalc,
++ graphdata->x, graphdata->y);
+
+ if(!graphdata->xcalc)
+ AJFREE(graphdata->x);
+@@ -6170,6 +6203,62 @@
+ Obj->yy1 = yy1;
+ Obj->yy2 = 0.0;
+ Obj->colour = colour;
++ Obj->scale = 0.0;
++ Obj->next = 0;
++
++ return;
++}
++
++
++
++
++/* @func ajGraphAddTextScale **************************************************
++**
++** Add text to be drawn when the graph is plotted.
++**
++** @param [u] thys [AjPGraph] Graph object
++** @param [r] xx1 [float] Start x position
++** @param [r] yy1 [float] Start y position
++** @param [r] colour [ajint] Colour code (see PLPLOT)
++** @param [r] scale [float] Character scale (0.0 to use the default)
++** @param [r] text [const char*] Text
++**
++** @return [void]
++** @@
++******************************************************************************/
++
++void ajGraphAddTextScale(AjPGraph thys, float xx1, float yy1,
++ ajint colour, float scale, const char *text)
++{
++ AjPGraphPlpObj Obj;
++
++ if (!thys->plplot)
++ return;
++ if(!thys->plplot->Obj)
++ {
++ AJNEW((thys->plplot->Obj));
++ Obj = thys->plplot->Obj;
++ }
++ else
++ {
++ Obj = thys->plplot->Obj;
++ while(Obj->next)
++ Obj = Obj->next;
++ AJNEW(Obj->next);
++ Obj = Obj->next;
++ }
++
++ ++thys->plplot->numofobjects;
++
++
++ Obj->type = TEXT;
++ Obj->text = ajStrNewC(text);
++ Obj->xx1 = xx1;
++ Obj->xx2 = 0.0;
++ Obj->yy1 = yy1;
++ Obj->yy2 = 0.0;
++ Obj->colour = colour;
++ Obj->scale = scale;
+ Obj->next = 0;
+
+ return;
+@@ -6390,6 +6479,7 @@
+ {
+ AjPGraphPlpObj Obj;
+ ajint temp;
++ float cold = 1.0;
+
+ /* graphdata : calls ajGraphLine etc. */
+
+@@ -6418,10 +6508,14 @@
+ }
+ else if(Obj->type == TEXT )
+ {
++ if(Obj->scale)
++ cold = ajGraphSetCharScale(Obj->scale);
+ temp = ajGraphSetFore(Obj->colour);
+ ajGraphTextStart(Obj->xx1, Obj->yy1,
+ ajStrGetPtr(Obj->text));
+ ajGraphSetFore(temp);
++ if(Obj->scale)
++ ajGraphSetCharScale(cold);
+ }
+ else if(Obj->type == LINE)
+ {
+@@ -6584,6 +6678,62 @@
+ Obj->yy1 = yy1;
+ Obj->yy2 = 0.0;
+ Obj->colour = colour;
++ Obj->scale = 0.0;
++ Obj->next = 0;
++
++ return;
++}
++
++
++
++
++/* @func ajGraphPlpDataAddTextScale *******************************************
++**
++** Add Text to be drawn when the graph is plotted.
++**
++** @param [u] graphdata [AjPGraphPlpData] Graph data object
++** @param [r] xx1 [float] Start x position
++** @param [r] yy1 [float] Start y position
++** @param [r] colour [ajint] Colour code (see PLPLOT)
++** @param [r] scale [float] Character scale (0.0 to use the default)
++** @param [r] text [const char*] Text to add
++**
++** @return [void]
++** @@
++******************************************************************************/
++
++void ajGraphPlpDataAddTextScale(AjPGraphPlpData graphdata,
++ float xx1, float yy1,
++ ajint colour, float scale, const char *text)
++{
++ AjPGraphPlpObj Obj;
++
++ if(!graphdata->Obj)
++ {
++ AJNEW((graphdata->Obj));
++ Obj = graphdata->Obj;
++ }
++ else /* cycle through till NULL found */
++ {
++ Obj = graphdata->Obj;
++ while(Obj->next)
++ Obj = Obj->next;
++ AJNEW(Obj->next);
++ Obj = Obj->next;
++ }
++
++ ++graphdata->numofobjects;
++
++
++ Obj->type = TEXT;
++ Obj->text = 0;
++ ajStrAssignEmptyC(&Obj->text,text);
++ Obj->xx1 = xx1;
++ Obj->xx2 = 0.0;
++ Obj->yy1 = yy1;
++ Obj->yy2 = 0.0;
++ Obj->colour = colour;
++ Obj->scale = scale;
+ Obj->next = 0;
+
+ return;
+diff -u ajax.old/ajgraph.h ajax/ajgraph.h
+--- ./ajax.old/ajgraph.h 2007-01-31 21:44:35.000000000 +0900
++++ ./ajax/ajgraph.h 2007-06-01 15:10:41.000000000 +0900
+@@ -96,6 +96,10 @@
+ void ajGraphPlpDataAddText (AjPGraphPlpData graphs,
+ float xx1, float yy1,
+ ajint colour, const char *text);
++void ajGraphPlpDataAddTextScale (AjPGraphPlpData graphs,
++ float xx1, float yy1,
++ ajint colour, float scale,
++ const char *text);
+ void ajGraphPlpDataSetMaxMin (AjPGraphPlpData graphdata, float xmin,
+ float xmax, float ymin, float ymax);
+ void ajGraphArrayMaxMin(const float *array, ajint npoints, float *min,
+@@ -145,11 +149,15 @@
+ AjPGraph ajGraphNew (void);
+ void ajGraphNewPage (AjPGraph thys, AjBool resetdefaults);
+ void ajGraphAddLine (AjPGraph thys, float xx1, float yy1,
+- float xx2, float yy2, ajint colour);
++ float xx2, float yy2, ajint colour);
+ void ajGraphAddRect (AjPGraph thys, float xx1, float yy1,
+- float xx2, float yy2, ajint colour, ajint fill);
++ float xx2, float yy2, ajint colour,
++ ajint fill);
+ void ajGraphAddText (AjPGraph thys, float xx1, float yy1,
+ ajint colour, const char *text);
++void ajGraphAddTextScale (AjPGraph thys, float xx1, float yy1,
++ ajint colour, float scale,
++ const char *text);
+ void ajGraphPlpDataDel(AjPGraphPlpData *thys);
+ void ajGraphOpen (AjPGraph thys, PLFLT xmin, PLFLT xmax,
+ PLFLT ymin, PLFLT ymax, ajint flags);
+@@ -167,6 +175,7 @@
+ void ajGraphSetBackBlack (void);
+ void ajGraphSetBackWhite (void);
+ float ajGraphSetCharScale (float scale);
++float ajGraphSetCharSize(float size);
+ void ajGraphSetDesc(AjPGraph thys, const AjPStr title);
+ void ajGraphSetDevice(const AjPGraph thys);
+ void ajGraphSetDir(AjPGraph thys, const AjPStr txt);
+diff -u ajax.old/ajgraphstruct.h ajax/ajgraphstruct.h
+--- ./ajax.old/ajgraphstruct.h 2007-02-10 03:30:58.000000000 +0900
++++ ./ajax/ajgraphstruct.h 2007-06-01 15:10:35.000000000 +0900
+@@ -17,6 +17,7 @@
+ ** @attr xx2 [float] x end
+ ** @attr yy1 [float] y start
+ ** @attr yy2 [float] y end
++** @attr scale [float] scale for text (0.0 to use the default)
+ ** @attr next [struct AjSGraphPlpObj*] link to next object in the list
+ ** @@
+ ******************************************************************************/
+@@ -29,6 +30,7 @@
+ float xx2;
+ float yy1;
+ float yy2;
++ float scale;
+ struct AjSGraphPlpObj *next;
+ } AjOGraphPlpObj;
+ #define AjPGraphPlpObj AjOGraphPlpObj*
+@@ -107,6 +109,7 @@
+ ** @attr yend [float] Last y value to plot
+ ** @attr ready [AjBool] Set by plplot device init
+ ** @attr minmaxcalc [AjBool] Set true when (xy)start/end are set
++** @attr windowset [AjBool] Set true when (xy) window coordinates are set
+ ** @attr isdata [AjBool] True for a data type graph
+ ** @attr displaytype [ajint] Displaytype index to graphType
+ ** @attr desc [AjPStr] Plot description, used to set default title
+@@ -135,6 +138,7 @@
+ float yend;
+ AjBool ready;
+ AjBool minmaxcalc;
++ AjBool windowset;
+ AjBool isdata;
+ ajint displaytype;
+ AjPStr desc;
Added: emboss/trunk/debian/patches/dbiflat.c
===================================================================
--- emboss/trunk/debian/patches/dbiflat.c (rev 0)
+++ emboss/trunk/debian/patches/dbiflat.c 2007-06-04 12:05:53 UTC (rev 52)
@@ -0,0 +1,13 @@
+This patch comes from Peter Rice and is needded for indexing EMBL-format
+databases whith lowercase IDs.
+http://lists.open-bio.org/pipermail/emboss/2007-May/002941.html
+--- ./emboss/dbiflat.c.old 2007-06-01 15:00:55.000000000 +0900
++++ ./emboss/dbiflat.c 2007-06-01 15:03:59.000000000 +0900
+@@ -739,6 +739,7 @@
+ {
+ ajRegExec(regEmblId, rline);
+ ajRegSubI(regEmblId, 1, myid);
++ ajStrFmtUpper(myid);
+ ajDebug("++id '%S'\n", *myid);
+ ajRegSubI(regEmblId, 3, &tmpfd);
+ if(svnfield >= 0 && ajStrGetLen(tmpfd))
Added: emboss/trunk/debian/patches/series
===================================================================
--- emboss/trunk/debian/patches/series (rev 0)
+++ emboss/trunk/debian/patches/series 2007-06-04 12:05:53 UTC (rev 52)
@@ -0,0 +1,3 @@
+abiview.c
+ajgraph
+dbiflat.c
Modified: emboss/trunk/debian/rules
===================================================================
--- emboss/trunk/debian/rules 2007-05-30 02:08:16 UTC (rev 51)
+++ emboss/trunk/debian/rules 2007-06-04 12:05:53 UTC (rev 52)
@@ -10,7 +10,7 @@
#--with-javaos=/usr/lib/j2sdk1.3/include/linux \
#--with-x \
-include /usr/share/dpatch/dpatch.make
+include /usr/share/quilt/quilt.make
build: patch build-stamp debian/copyright
build-stamp: config.status
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