[Pkg-emboss-commits] r51 - mirbase/trunk/debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2007-05-30 02:08:16 +0000 (Wed, 30 May 2007)
New Revision: 51

Modified:
   mirbase/trunk/debian/changelog
   mirbase/trunk/debian/rules
Log:
Fixing VERSION, swiching to dbxflat (but currently broken)

Modified: mirbase/trunk/debian/changelog
===================================================================
--- mirbase/trunk/debian/changelog	2007-05-30 01:59:15 UTC (rev 50)
+++ mirbase/trunk/debian/changelog	2007-05-30 02:08:16 UTC (rev 51)
@@ -2,8 +2,9 @@
 
   * New upstream release.
   * Added a get-upstream-release rule
+  * swiched from dbiflat to dbxflat
 
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Wed, 30 May 2007 10:32:58 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Wed, 30 May 2007 10:44:44 +0900
 
 mirbase (9.1-1) UNRELEASED ; urgency=low
 

Modified: mirbase/trunk/debian/rules
===================================================================
--- mirbase/trunk/debian/rules	2007-05-30 01:59:15 UTC (rev 50)
+++ mirbase/trunk/debian/rules	2007-05-30 02:08:16 UTC (rev 51)
@@ -1,6 +1,8 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
 
+VERSION := $(shell dpkg-parsechangelog | grep Ver | cut -d' ' -f2 | cut -d- -f1)
+
 build: build-stamp
 
 build-stamp: emboss blast2
@@ -12,22 +14,25 @@
 	gzip -9 -c miRNA.xls > miRNA.xls.gz
 	touch $@
 
+.embossrc:
+	PWD=`pwd` perl -pe "s(/usr/share/mirbase/emboss)($$PWD)" < debian/mirbase.embossrc > .embossrc
+
 EMBOSS-FILES = emboss acnum.hit acnum.trg division.lkp entrynam.idx miRNA.dat
-emboss:
+emboss: .embossrc
 	zcat miRNA.dat.gz > miRNA.dat
-	dbiflat -dbname mirbase\
-	 	-idformat EMBL\
+	dbxflat -dbname mirbase\
+		-dbresource embl\
+		-idformat EMBL\
 		-directory .\
 		-filenames miRNA.dat\
-		-release 9.1\
+		-release $(VERSION)\
 		-date `date +%d/%m/%y`\
-		-outfile /dev/stdout\
+		-stdout\
 		-fields id,acc
 	touch emboss
 
 BLAST2-FILES = mirbase.nhr mirbase.nin mirbase.nsd mirbase.nsi mirbase.nsq
 blast2: emboss
-	PWD=`pwd` perl -pe "s(/usr/share/mirbase/emboss)($$PWD)" < debian/mirbase.embossrc > .embossrc
 	seqret mirbase:* mirbase.fasta
 	formatdb -i mirbase.fasta\
 		 -l /dev/stdout\
@@ -79,7 +84,7 @@
 	-test -d ../tarballs/CURRENT && rm -rf ../tarballs/CURRENT
 	( cd ../tarballs ; wget -m -nH --cut-dirs=3 ftp://ftp.sanger.ac.uk/pub/mirbase/sequences/CURRENT/ )
 	rm ../tarballs/CURRENT/.listing
-	( cd ../tarballs ; tar cvfz mirbase_$$(cd ../trunk ; dpkg-parsechangelog | grep Ver | perl -ne '/\s(.*?)\-/ ; print $1').orig.tar.gz CURRENT/ )
+	( cd ../tarballs ; tar cvfz mirbase_$(VERSION).orig.tar.gz CURRENT/ )
 	rm -rf ../tarballs/CURRENT