[Pkg-exppsy-pynifti] [SciPy-User] installing pynifti under EPD

[Karl Young]

Hey Chris,

Thanks for the tip. I think I did that on the 3rd or 4th try but I 
probably gummed something up before that. I'll try to back out more 
carefully and try again; nice to know that those are the right steps; 
thanks again,

-- KY

> Hey Karl,
>
> I'm Cc'ing the pynifti list in this response.  IIRC pynifti version
> 20090303 includes the necessary nifticlibs.  I believe all you need to
> do is:
> 1) cd to the source directory
> 2) make # this will build the nifticlibs which are located in the
> directory named '3rd'
> 3) python setup.py install
>
> I just nuked my install and the above worked.  I'm using the git
> repository, so it's possible my code is different.
>
> Chris
>
> On Thu, Aug 27, 2009 at 12:45 PM, Karl Young<karl.young at ucsf.edu> wrote:
>   
>> Sorry if this issue is slightly tangential to the interests of this
>> group but I couldn't think of any place else to ask (e.g. I don't think
>> the pynifti guys have a list). I'd like to read some analyze image files
>> (Mayo clinic medical image file format) into numpy arrays and process
>> them. This works fine in linux but I'm currently trying to use
>> Enthought's EPD distribution under OS X (Python 2.5.4 |EPD_Py25 4.3.0|
>> (r254:67916, May 17 2009, 20:07:12)) and having no luck installing
>> pynifti to read the analyze files.
>>
>> I downloaded and tried to install pynifti (pynifti-0.20090303.1) using
>> the standard distutils mechanism
>>  but when I import nifti I got errors saying some of the symbols in
>> _clib.so couldn't be found. So I downloaded and installed
>> nifticlib-1.1.0 but that didn't help, I tried to copy the various
>> nifticlib libraries into obvious places to no avail and there isn't much
>> in the way of documentation on this so I was wondering if anyone had the
>> magic incantation for installing pynifti under EPD on OS X; sorry again
>> if this is slightly off topic.
>>
>> -- Karl Young
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>>
>>     
> .
>
>