r40152 - in /trunk/libbio-primerdesigner-perl: META.yml debian/changelog debian/control debian/copyright debian/rules lib/Bio/PrimerDesigner.pm

jawnsy-guest at users.alioth.debian.org jawnsy-guest at users.alioth.debian.org
Sat Jul 18 22:20:08 UTC 2009


Author: jawnsy-guest
Date: Sat Jul 18 22:20:00 2009
New Revision: 40152

URL: http://svn.debian.org/wsvn/pkg-perl/?sc=1&rev=40152
Log:
* New upstream release
* Standards-Versino 3.8.2
* Added myself to Uploaders and Copyright

Modified:
    trunk/libbio-primerdesigner-perl/META.yml
    trunk/libbio-primerdesigner-perl/debian/changelog
    trunk/libbio-primerdesigner-perl/debian/control
    trunk/libbio-primerdesigner-perl/debian/copyright
    trunk/libbio-primerdesigner-perl/debian/rules
    trunk/libbio-primerdesigner-perl/lib/Bio/PrimerDesigner.pm

Modified: trunk/libbio-primerdesigner-perl/META.yml
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/META.yml?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/META.yml (original)
+++ trunk/libbio-primerdesigner-perl/META.yml Sat Jul 18 22:20:00 2009
@@ -1,6 +1,6 @@
 ---
 name: Bio-PrimerDesigner
-version: 0.06
+version: 0.07
 author:
   - 'Sheldon McKay <mckays at cshl.edu>; Ken Youens-Clark <kclark at cshl.edu>'
 abstract: Design PCR primers using primer3 and epcr

Modified: trunk/libbio-primerdesigner-perl/debian/changelog
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/debian/changelog?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/debian/changelog (original)
+++ trunk/libbio-primerdesigner-perl/debian/changelog Sat Jul 18 22:20:00 2009
@@ -1,4 +1,8 @@
-libbio-primerdesigner-perl (0.06-2) UNRELEASED; urgency=low
+libbio-primerdesigner-perl (0.07-1) UNRELEASED; urgency=low
+
+  * New upstream release
+  * Standards-Versino 3.8.2
+  * Added myself to Uploaders and Copyright
 
   [ Nathan Handler ]
   * debian/watch: Update to ignore development releases.
@@ -6,7 +10,7 @@
   [ Charles Plessy ]
   * Refreshed debian/copyright. 
 
- -- Nathan Handler <nhandler at ubuntu.com>  Sat, 06 Jun 2009 01:32:55 +0000
+ -- Jonathan Yu <frequency at cpan.org>  Sat, 18 Jul 2009 14:11:57 -0400
 
 libbio-primerdesigner-perl (0.06-1) unstable; urgency=low
 

Modified: trunk/libbio-primerdesigner-perl/debian/control
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/debian/control?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/debian/control (original)
+++ trunk/libbio-primerdesigner-perl/debian/control Sat Jul 18 22:20:00 2009
@@ -1,26 +1,24 @@
 Source: libbio-primerdesigner-perl
 Section: perl
 Priority: optional
-Build-Depends: debhelper (>= 7), libmodule-build-perl
-Build-Depends-Indep: perl (>= 5.6.10-12),
- libwww-perl, libclass-base-perl, libwww-perl, libreadonly-perl, libwww-perl,
- libtest-pod-perl, libtest-pod-coverage-perl,
- primer3, ncbi-epcr
+Build-Depends: debhelper (>= 7), perl-modules (>= 5.10) | libmodule-build-perl
+Build-Depends-Indep: perl (>= 5.6.10-12), libwww-perl, libclass-base-perl,
+ libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3,
+ ncbi-epcr
 Maintainer: Debian Perl Group <pkg-perl-maintainers at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
- gregor herrmann <gregoa at debian.org>
-Standards-Version: 3.8.1
+Uploaders: gregor herrmann <gregoa at debian.org>,
+ Charles Plessy <plessy at debian.org>, Jonathan Yu <frequency at cpan.org>
+Standards-Version: 3.8.2
 Vcs-Svn: svn://svn.debian.org/pkg-perl/trunk/libbio-primerdesigner-perl/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-perl/trunk/libbio-primerdesigner-perl/
 Homepage: http://search.cpan.org/dist/Bio-PrimerDesigner/
 
 Package: libbio-primerdesigner-perl
 Architecture: all
-Depends: ${perl:Depends}, ${misc:Depends},
- libwww-perl, libclass-base-perl, libwww-perl, libreadonly-perl, libwww-perl,
- primer3, ncbi-epcr
-Description: module to design PCR primers using primer3 and epcr
+Depends: ${perl:Depends}, ${misc:Depends}, libwww-perl, libclass-base-perl,
+ libreadonly-perl, primer3, ncbi-epcr
+Description: Perl module to design PCR primers using primer3 and epcr
  Bio::PrimerDesigner provides a low-level interface to the primer3 and epcr
  binary executables and supplies methods to return the results. In addition to
- acces local installations of primer3 or e-PCR, it also offers the ability to
+ accessing local installations of primer3 or e-PCR, it also offers the ability to
  accessing the primer3 binary via a remote server.

Modified: trunk/libbio-primerdesigner-perl/debian/copyright
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/debian/copyright?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/debian/copyright (original)
+++ trunk/libbio-primerdesigner-perl/debian/copyright Sat Jul 18 22:20:00 2009
@@ -2,7 +2,7 @@
 
 Name: Bio::PrimerDesigner
 Contact: Sheldon McKay <mckays at cshl.edu>, Ken Youens-Clark <kclark at cshl.edu>
-Source: http://search.cpan.org/CPAN/authors/id/S/SM/SMCKAY/Bio-PrimerDesigner-0.05.tar.gz
+Source: http://search.cpan.org/dist/Bio-PrimerDesigner
 
 Copyright: 2003–2009 Sheldon McKay <mckays at cshl.edu>
            2003–2009 Ken Youens-Clark <kclark at cshl.edu>

Modified: trunk/libbio-primerdesigner-perl/debian/rules
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/debian/rules?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/debian/rules (original)
+++ trunk/libbio-primerdesigner-perl/debian/rules Sat Jul 18 22:20:00 2009
@@ -1,67 +1,4 @@
 #!/usr/bin/make -f
-# This debian/rules file is provided as a template for normal perl
-# packages. It was created by Marc Brockschmidt <marc at dch-faq.de> for
-# the Debian Perl Group (http://pkg-perl.alioth.debian.org/) but may
-# be used freely wherever it is useful.
-#
-# It was later modified by Jason Kohles <email at jasonkohles.com>
-# http://www.jasonkohles.com/ to support Module::Build installed modules
 
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-# If set to a true value then MakeMaker's prompt function will
-# always return the default without waiting for user input.
-export PERL_MM_USE_DEFAULT=1
-
-PERL   ?= /usr/bin/perl
-PACKAGE = $(shell dh_listpackages)
-TMP     = $(CURDIR)/debian/$(PACKAGE)
-
-TEST_FILES= $(filter-out t/remote.t,$(shell echo t/*.t))
-
-build: build-stamp
-build-stamp:
-	dh_testdir
-	# Add commands to compile the package here
-	$(PERL) Build.PL installdirs=vendor
-	$(PERL) Build
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	$(PERL) Build test test_files="$(TEST_FILES)"
-endif
-	touch $@
-
-clean:
-	dh_testdir
-	dh_testroot
-	dh_clean build-stamp install-stamp
-	# Add commands to clean up after the build process here
-	[ ! -f Build ] || $(PERL) Build --allow_mb_mismatch 1 distclean
-
-install: install-stamp
-install-stamp: build-stamp
-	dh_testdir
-	dh_testroot
-	dh_prep
-	# Add commands to install the package into $(TMP) here
-	$(PERL) Build install destdir=$(TMP) create_packlist=0
-	touch $@
-
-binary-arch:
-# We have nothing to do here for an architecture-independent package
-
-binary-indep: build install
-	dh_testdir
-	dh_testroot
-	dh_installdocs README
-	dh_installchangelogs 
-	dh_perl
-	dh_compress
-	dh_fixperms
-	dh_installdeb
-	dh_gencontrol
-	dh_md5sums
-	dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
+%:
+	dh $@

Modified: trunk/libbio-primerdesigner-perl/lib/Bio/PrimerDesigner.pm
URL: http://svn.debian.org/wsvn/pkg-perl/trunk/libbio-primerdesigner-perl/lib/Bio/PrimerDesigner.pm?rev=40152&op=diff
==============================================================================
--- trunk/libbio-primerdesigner-perl/lib/Bio/PrimerDesigner.pm (original)
+++ trunk/libbio-primerdesigner-perl/lib/Bio/PrimerDesigner.pm Sat Jul 18 22:20:00 2009
@@ -273,8 +273,10 @@
 
     my $self = shift;
 
+    # technically, this should be 'os_is_not_windows'
     unless ( defined $self->{'os_is_unix'} ) {
-        $self->{'os_is_unix'} = ( $^O =~ /(n[iu]x|darwin)/ ) ? 1 : 0;
+        #$self->{'os_is_unix'} = ( $^O =~ /(n[iu]x|darwin)/ ) ? 1 : 0;
+	$self->{'os_is_unix'} = ( $^O !~ /^MSWin/i ) ? 1 : 0;
     }
 
     return $self->{'os_is_unix'};




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