[SCM] Perl extension for running and parsing NCBIs BLAST 2.x branch, master, updated. debian/0.66-1-3-g99c1607

[Jens Preussner]

The following commit has been merged in the master branch:
commit 71990c5f0df55656889b4101201e6cbd2a4ff05a
Author: Jens Preussner <jenzo at cbv.net>
Date:   Mon Jul 9 13:00:12 2012 +0000

    Reviewed d/changelog, d/compat, d/control, d/copyright, d/rules. Added d/watch. Deleted d/docs

diff --git a/debian/changelog b/debian/changelog
index 0ae2c82..815faf9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
-libnhgri-blastall-perl (0.66-1) unstable; urgency=low
+libnhgri-blastall-perl (0.66-1) UNRELEASED; urgency=low
 
-  * Initial release.
+  * Initial release (Closes: 680177).
 
  -- Laszlo Kajan <lkajan at rostlab.org>  Fri, 13 Nov 2009 08:43:01 +0100
 
diff --git a/debian/compat b/debian/compat
index 7f8f011..45a4fb7 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-7
+8
diff --git a/debian/control b/debian/control
index 64c958c..c0d10fd 100644
--- a/debian/control
+++ b/debian/control
@@ -1,16 +1,19 @@
 Source: libnhgri-blastall-perl
 Section: perl
-Priority: extra
-Maintainer: Laszlo Kajan <lkajan at rostlab.org>
+Priority: optional
+Maintainer: Debian Perl Group <pkg-perl-maintainers at lists.alioth.debian.org>
+Uploaders: Laszlo Kajan <lkajan at rostlab.org>, Jens Preussner <jenzo at cbv.net>
 Build-Depends: debhelper (>= 7), perl (>= 5.8.0-7)
-Standards-Version: 3.8.0
+Vcs-Git: git://git.debian.org/pkg-perl/packages/libnhgri-blastall-perl.git
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libnhgri-blastall-perl.git
+Standards-Version: 3.9.3
 Homepage: http://genome.nhgri.nih.gov/
 
 Package: libnhgri-blastall-perl
 Architecture: any
 Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}
-Description: Perl extension for running and parsing NCBI’s BLAST 2.x
- If you have NCBI’s BLAST2 or WU-BLAST installed locally and your environment is already setup you can use Perl’s object-oriented capabilities to run your BLASTs.  Also if you have a blastcl3 binary from the toolkit (or binaries from our
+Description: Perl extension for running and parsing NCBIs BLAST 2.x
+ If you have NCBIs BLAST2 or WU-BLAST installed locally and your environment is already setup you can use Perls object-oriented capabilities to run your BLASTs. Also if you have a blastcl3 binary from the toolkit (or binaries from our
  FTP site) you can run BLAST over the network.  There are also methods to blast single sequences against each other using the bl2seq binaries (also in the toolkit and binaries).  You can blast one sequence against a library of sequences
  using the blast_one_to_many method.  You can format databases with formatdb method.  You can also have NHGRI::Blastall read existing BLAST reports.  If you have a database of repetitive DNA or other DNA you would like to mask out, you can
  use the mask method to mask the data against these databases. You can then use either the filter or result methods to parse the report and access the various elements of the data.
diff --git a/debian/copyright b/debian/copyright
index 92b64dd..3d06b13 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,18 +1,10 @@
-This package was debianized by Laszlo Kajan <lkajan at rostlab.org> on
-Fri, 13 Nov 2009 08:43:01 +0100.
-
-It was downloaded from http://archive.sunet.se/pub/Science/molbio/nhgri/blastall/NHGRI-Blastall-0.66.tar.gz
-
-Upstream Author:
-
-    Joseph Ryan, jfryan at nhgri.nih.gov
-
-Copyright:
-
-"noncopyright"
-
-License:
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Joseph Ryan <jfryan at nhgri.nih.gov>
+Source: ftp://ftp.nhgri.nih.gov/pub/software/blastall/NHGRI-Blastall-0.66.tar.gz
 
+Files: *
+Copyright: Joseph Ryan
+License: public-domain
     PUBLIC DOMAIN NOTICE
     
     This software/database is ``United States Government Work'' under the 
@@ -34,5 +26,8 @@ License:
     of the authors as the source of the software or data should be made, 
     using http://genome.nhgri.nih.gov/webblast as the citation. 
 
-The Debian packaging is (C) 2009, Laszlo Kajan <lkajan at rostlab.org> and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
+Files: debian/*
+Copyright: 2009, Laszlo Kajan <lkajan at rostlab.org>
+License: GPL
+    The Debian packaging is (C) 2009, Laszlo Kajan <lkajan at rostlab.org> and
+    is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
diff --git a/debian/docs b/debian/docs
deleted file mode 100644
index 61dbec4..0000000
--- a/debian/docs
+++ /dev/null
@@ -1,4 +0,0 @@
-INSTALL
-MANIFEST
-README
-Changes
diff --git a/debian/rules b/debian/rules
index 3850db1..2d33f6a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,23 +1,4 @@
 #!/usr/bin/make -f
 
-build: build-stamp
-build-stamp:
-	dh build
-	touch $@
-
-clean:
-	dh $@
-
-install: install-stamp
-install-stamp: build-stamp
-	dh install
-	touch $@
-
-binary-arch: install
+%:
 	dh $@
-
-binary-indep:
-
-binary: binary-arch binary-indep
-
-.PHONY: binary binary-arch binary-indep install clean build
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..25dbc21
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+ftp://ftp.nhgri.nih.gov/pub/software/blastall/NHGRI-Blastall-(.+).tar.gz

-- 
Perl extension for running and parsing NCBIs BLAST 2.x