[libpdl-stats-perl] branch master updated (76a774e -> abc89a2)

gregor herrmann gregoa at debian.org
Sun Dec 6 14:04:35 UTC 2015


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gregoa pushed a change to branch master
in repository libpdl-stats-perl.

      from  76a774e   update changelog
       new  c3fd91c   Add debian/upstream/metadata
       new  123ef67   Update debian/changelog
      adds  dd52ae4   Initial commit at pre 0.4.4
      adds  10d53fd   GLM added interaction_code. needs test
      adds  06d6ebc   GLM added ols_rptd and test!
      adds  23a7518   Started working association measures
      adds  5cd7baf   Revert "Started working association measures"
      adds  fb124fd   GLM eval wrapped optional modules; replaced perl reverse sort with (-1:0).
      adds  872f69d   Cleaned up some unnecessary files.
      adds  f369d3c   Kmeans pod correction.
      adds  a42482e   Added binomial_test to Basic.
      adds  3e85587   Prerequisite PDL::Lite => 2.4.8 because of PDL lu_decomp threading problem in 2.4.7.
      adds  e714c45   Kmeans pod update.
      adds  f27db79   chmod.
      adds  adf37bc   GLM interaction_code test added.
      adds  564af5f   TS updated plot_season to season_m; tests added.
      adds  9d18b77   TS function names updated.
      adds  6657c77   GLM added plot_residual().
      adds  36b8c79   Upgraded dependency to PDL 2.4.8. Updated version.
      adds  6ef26bc   GLM ols_rptd() pod update.
      adds  92f04f8   TS season_m() default to plot=>1
      adds  06d3e1e   Update time in Changes
      adds  5f4fd99   Doc update.
      adds  93f3860   Revert prerequisit to PDL-2.4.4. Added note about PDL-2.4.7 lu_decomp() bug in README.
      adds  3e46a16   Documentation update
      adds  d69cd00   Starting 0.5.1. pca, glm tests improved.
      adds  71f979f   Basic added cov_table(). Test added.
      adds  a37b651   pca can work on cov. but return val, plot etc still need to accomodate this change.
      adds  fbe7967   GLM pca() modification; plot_scores() added; plot_scree() to plot_screes().
      adds  b30fc56   Documenting pca() changes.
      adds  768dafb   Updating plotting functions to default to png in Windows.
      adds  d4f6af9   plot_scores() plots z-scores.
      adds  8649353   Adding reference.
      adds  80fe553   pca calls only plot_scree. need to call plot_scores manually because png overwrites if plotting both.
      adds  29f5024   Documentation update.
      adds  925f4ec   Spelling correction.
      adds  7186906   pca() test SLATEC vs. MatrixOps precision fix.
      adds  8679026   Precision fix, again.
      adds  cd043ca   pca() SLATEC vs MatrixOps sign fix.
      adds  d181905   pca() does cov.
      adds  d53b4d8   Removing prereq fatal.
      adds  d3ed9c2   GLM plot_scores() does cov version.
      adds  8a850c2   Updating Changes.
      adds  b469b40   Documentation update.
      adds  a082f9e   POD update and 2.4.7 warning.
      adds  8f73b79   GLM pod, test update.
      adds  8985b57   GLM pod update.
      adds  2b5162f   Updating Changes
      adds  f269055   Documentation update.
      adds  0a86bac   Doc update.
      adds  c68ff73   Merge branch 'mx_0.5.5'
      adds  929115a   Added lvalue_assign_detour() to .= affected tests.
      adds  384e8a3   Rid of .= in tests.
      adds  aa51e96   Moved no slatec warning to test from module.
      adds  67450aa   Updated version to 0.5.6.
      adds  dfc5590   Updated Changes list.
      adds  0a94733   Adding group_by function.
      adds  75d5e4e   Use the same method for equal and unequal n cases in group_by. This preserves the original ordering in the chunks.
      adds  f1ef421   Version and changes updated.
      adds  dd0ae3d   Moved _array_to_pdl from Kmeans to Basic.
      adds  98459c3   group_by supports multiple factors as perl array or pdl.
      adds  eb5a890   removed old deprecated method get_data.
      adds  4095233   Updated Changes.
      adds  f52d6bb   Added labels for group_by single factor case.
      adds  f33daa5   tests updated for labels and multiple factor group_by.
      adds  9129843   Remove quotes for gsl config. rt.cpan.org bug #73453 fix.
      adds  9a0bbcc   Bailing out of installation if perl 5.14.0-5.15.8 detected. Added warning and ref re perl bug #107366.
      adds  fc64bd9   Minor warning fix.
      adds  ccb3018   Changes updated.
      adds  b6c6596   Adding script for updating pdldoc.db.
      adds  8036108   'make update_doc' runs. Yet to hook into 'make install'.
      adds  6774a8b   make install runs add_doc.pl.
      adds  bf1ceae   Updated group_by documentation.
      adds  78fa9c2   Allows --force to attempt a build if running under perl-5.15.0 - 5.15.8.
      adds  17c9590   Doc update.
      adds  b98f34b   doc database windows install fix. v0.6.2.
      adds  ccf9b8f   binomial_test() bug fix -- [rt.cpan.org #82725]
      adds  d58433d   Added a few different forms for calculating the Poisson distribution
      adds  33878e0   Merge pull request #1 from run4flat/master
      adds  5b9ed4f   Merge branch 'master' of github.com:maggiexyz/PDL-Stats
      adds  d7ed4d5   Added tests for pmf_poisson variants.
      adds  63749ee   Committer: Ingo Schmid (ingosch at gmx.at)
      adds  d24949b   	modified:   GLM/glm.pp BAd value support added for missing data to ols
      adds  33b955b   	modified:   GLM/glm.pp
      adds  61565c0   Added unit test for ols with bad value. Slight glm.pp code clean up.
      adds  12cf8d5   Merge pull request #2 from maggiexyz/ols-fix
      adds  990e123   Updated changes.
      adds  af85174   Updated Basic _array_to_pdl to handle bad value.
      adds  0d58f71   Added more test for _array_to_pdl bad value handling.
      adds  5e175e4   GLM anova supports bad value in dependent and independent variables. GLM effect_code etc. supports bad value. Kmeans iv_cluster supports bad value.
      adds  ddb10ba   Added IV bad value support for anova_rptd. Fixed anova bad value test.
      adds  289d7c4   v0.6.3
      adds  abfd765   work around situation when PDL isn't installed already
      adds  663abf7   Merge pull request #3 from jwilson1066/master
      adds  0e71471   Fixed typo and min PDL dep version.
      adds  20f86ab   Reomved eval around pp make. Updated format.
      adds  70962ae   v0.6.3_1. Changes updated.
      adds  75d12ba   v0.6.3_2. Added eval back for writing dummy make file.
      adds  14453ac   v0.6.3_3. Added cpanfile to MANIFEST
      adds  d8cdc6e   v0.6.4. Make cpan PDL::Stats work without previous PDL installation.
      adds  3e0feda   Apply Chris Marshall's patch for PDL::slice.
      adds  d23ce04   All tests pass against PDL 2.00607 (fix for rt.cpan.org #88784). Changed PDL dep version to 0.
      adds  7b68d76   v0.6.4_1
      adds  02e6756   Cleaned up my $tmp var warning.
      adds  83a1543   Added warning about not supporting 64bit pdl.
      adds  87ae764   It's 2013 now.
      adds  77cbcef   v0.6.5.
      adds  bd4ddd1   Applied patches submitted by gregor herrmann for rt.cpan.org #96711 and rt.cpan.org #96712 (typo and manpage encoding).
      adds  ffcc4b1   Added test for mixed anova_rptd with more btwn subj var levels.
      adds  335ca93   Removed bogus test.
      adds  90af608   Added tests based on SPSS from Erich Greene.
      adds  cdc65a8   Increased the number of trials for kmeans tests [rt.cpan.org #96742].
      adds  5654597   Merge branch 'master' into v0.6.6
      adds  ee4347a   Changed cluster pdls from byte to short. This fixes the bug of using -1 to denote bad elements as well as removes the limit of supporting up to 255 varibles / clusters. See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752026#12
      adds  c78228c   Skip failing anova_rptd tests for now.
      adds  6988cd0   v0.6.5_1
      adds  1e33c0c   Changed propogate_badflag to propagate_badflag in sync with PDL.
      adds  05b5a72   0.6.5_2
      adds  fb7dae0   Don't track generated data
      adds  e70f212   No track obsolete cpanfile
      adds  26f66c3   .gitignore
      adds  d34bc09   New github location in metadata
      adds  ac2a6bd   New version number scheme per best practice
      adds  51c8b80   Update Changes
      adds  12f7542   Travis CI
      adds  5f1537c   Dep on PDL::Core, not PDL
      adds  0954cc5   Add manifest test, remove META.yml from main MANIFEST
      adds  73c6633   Meta v2
      adds  dea1b1c   No changelog test... for now
      adds  45fe457   Wrap kmeans and kmeans_bad tests in retries.
      adds  315b975   Print out kmeans_bad test for debugging.
      adds  00054ae   Merge pull request #9 from PDLPorters/kmeans-test-update
      adds  71405c8   add badges to README and rename to Markdown file
      adds  08cf4a4   Merge pull request #6 from PDLPorters/gh-sprucing
      adds  806a294   Mark non-deterministic test TODO as fails on clang
      adds  166b1e2   Merge pull request #10 from PDLPorters/todo-nondeterministic
      adds  2425957   Beef up CI with optional requirements spelled out and apt installed
      adds  58c48de   Merge pull request #11 from PDLPorters/add-travis-deps
      adds  cc144dc   v0.71
      adds  91de8e0   remove PDL::GSL::CDF from prereqs
      adds  fc2a4c2   Update Changes, test, CI that
      adds  83bbccd   0.72
      adds  92ebce8   Make PDL::Graphics::PGPLOT and PDL::Slatec recommends, not depends
      adds  d30cb29   making doc available on metacpan.org (GENERATED subdir)
      adds  18af805   make dist now fails if "gsl-config" command not available
      adds  42429ca   v.073
      adds  d0f49a6   *.pp -> *.pd so pdlpp_mkgen finds
      adds  73becd6   Add test messages to all tests in stats_basic.t
      adds  e4398b1   Add test messages to stats_glm.t
      adds  e46416e   Add test messages to stats_kmeans.t
      adds  414d71d   Add test messages to t/stats_ts.t
      adds  eebe720   Merge pull request #18 from kaoru/test-messages
      adds  78d7905   workaround for issue #19 (t/kmeans.t crashes with PDL-2.014)
      adds  994aeaf   Merge pull request #20 from kmx/kmx-kmeans-workaround
      adds  b126afb   PDL::GSL::CDF facelift
      adds  15ed78e   Merge pull request #21 from kmx/kmx-pdl-gsl-cdf-facelift
      adds  d69119f   Improved support for 64bit indexing
      adds  ae3d7e1   Merge pull request #22 from kmx/kmx-improved-64bit-indexing-support
      adds  feca0df   0.73_1
      adds  546ef93   0.74
      adds  b8ad3c9   Imported Upstream version 0.74
       new  328af6d   Merge tag 'upstream/0.74'
       new  0c17de6   Update debian/changelog
       new  abc89a2   update changelog

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Basic/stats_basic.pd          |   70 +-
 Distr/distr.pd                |   48 +-
 GENERATED/PDL/GSL/CDF.pm      | 1756 +++++++++++++++++++++++++++++++++++++----
 GENERATED/PDL/Stats/Basic.pm  |    2 +-
 GENERATED/PDL/Stats/Kmeans.pm |   10 +-
 GENERATED/PDL/Stats/TS.pm     |    4 +-
 GLM/glm.pd                    |   27 +-
 GSL/gsl_cdf.pd                |   88 ++-
 GSL/t/cdf.t                   |   93 ++-
 Kmeans/kmeans.pd              |   28 +-
 META.json                     |    5 +-
 META.yml                      |    5 +-
 Stats.pm                      |    4 +-
 TS/ts.pd                      |   36 +-
 debian/changelog              |    9 +-
 debian/upstream/metadata      |    6 +
 t/stats_basic.t               |  103 ++-
 t/stats_glm.t                 |   53 +-
 t/stats_kmeans.t              |   35 +-
 t/stats_ts.t                  |   54 +-
 20 files changed, 2035 insertions(+), 401 deletions(-)
 create mode 100644 debian/upstream/metadata

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