[DRE-commits] [SCM] ruby-bio.git branch, master, updated. upstream/1.4.1-12-g650c1c6

[Cédric Boutillier]

The following commit has been merged in the master branch:
commit b78ff3367f6cab58a0faecc56a13e6e295f33a67
Author: Cédric Boutillier <cedric.boutillier at gmail.com>
Date:   Fri Feb 17 15:41:23 2012 +0100

    ensure definition of CutSymbol in test_cut_symbol

diff --git a/debian/patches/fix_definition_CutSymbol_in_test_cut_symbol.patch b/debian/patches/fix_definition_CutSymbol_in_test_cut_symbol.patch
new file mode 100644
index 0000000..85ac9a5
--- /dev/null
+++ b/debian/patches/fix_definition_CutSymbol_in_test_cut_symbol.patch
@@ -0,0 +1,19 @@
+Description: ensure that Bio::RestrictionEnzyme::CutSymbol is defined in tests
+ loading bio/utils/restriction_enzyme/cut_symbol.rb is not enough.
+ bio/utils/restriction_enzyme.rb loads automatically cut_symbol.rb if called.
+Author: Cédric Boutillier <cedric.boutillier at gmail.com>
+Last-Update: 2012-02-17
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- a/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb
++++ b/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb
+@@ -15,7 +15,8 @@
+ 
+ # libraries needed for the tests
+ require 'test/unit'
+-require 'bio/util/restriction_enzyme/cut_symbol'
++require 'bio/util/restriction_enzyme'
++#require 'bio/util/restriction_enzyme/cut_symbol'
+ 
+ module Bio; module TestRestrictionEnzyme #:nodoc:
+ 
diff --git a/debian/patches/series b/debian/patches/series
index b427531..7a3b534 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 disable-test-soap.patch
+fix_definition_CutSymbol_in_test_cut_symbol.patch

-- 
ruby-bio.git