[DRE-commits] [ruby-crb-blast] 01/01: use https for VCS URI & update builddeps

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository ruby-crb-blast.

commit eeadabdfb75b66c04a0ce672a7189d9bdeb64bce
Author: Michael R. Crusoe <crusoe at ucdavis.edu>
Date:   Tue Jan 26 06:39:59 2016 -0800

    use https for VCS URI & update builddeps
---
 debian/control                     |  7 +++++--
 debian/patches/drop-bindeps-req    | 23 +++++++++++++++++++++++
 debian/patches/drop-coverage-check | 21 +++++++++++++++++++++
 debian/patches/series              |  2 ++
 4 files changed, 51 insertions(+), 2 deletions(-)

diff --git a/debian/control b/debian/control
index b990001..59ace0d 100644
--- a/debian/control
+++ b/debian/control
@@ -11,10 +11,12 @@ Build-Depends: debhelper (>= 9),
                ruby-bio,
                ruby-fixwhich (>= 1.0.2),
                ruby-threach (>= 0.2.0),
-               ruby-trollop (>= 2.0)
+               ruby-trollop (>= 2.0),
+               ruby-shoulda,
+               ncbi-blast+
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/pkg-ruby-extras/ruby-crb-blast.git
-Vcs-Git: git://anonscm.debian.org/pkg-ruby-extras/ruby-crb-blast.git
+Vcs-Git: https://anonscm.debian.org/pkg-ruby-extras/ruby-crb-blast.git
 Homepage: https://github.com/cboursnell/crb-blast
 XS-Ruby-Versions: all
 
@@ -25,6 +27,7 @@ Depends: ruby | ruby-interpreter,
          ruby-fixwhich (>= 1.0.2),
          ruby-threach (>= 0.2.0),
          ruby-trollop (>= 2.0),
+         ncbi-blast+,
          ${misc:Depends},
          ${shlibs:Depends}
 Description: Run conditional reciprocal best blast
diff --git a/debian/patches/drop-bindeps-req b/debian/patches/drop-bindeps-req
new file mode 100644
index 0000000..eae7b12
--- /dev/null
+++ b/debian/patches/drop-bindeps-req
@@ -0,0 +1,23 @@
+Author: Michael R. Crusoe <crusoe at ucdavis.edu>
+Description: we manage deps using packages; not bindeps
+--- ruby-crb-blast.orig/bin/crb-blast
++++ ruby-crb-blast/bin/crb-blast
+@@ -6,7 +6,6 @@
+ 
+ require 'trollop'
+ require 'crb-blast'
+-require 'bindeps'
+ 
+ opts = Trollop::options do
+   version CRB_Blast::VERSION::STRING.dup
+--- ruby-crb-blast.orig/test/test_bin.rb
++++ ruby-crb-blast/test/test_bin.rb
+@@ -7,7 +7,7 @@
+   context 'crb-blast' do
+ 
+     should 'run binary' do
+-      cmd = "bundle exec bin/crb-blast --help"
++      cmd = "bin/crb-blast --help"
+       runner = CRB_Blast::Cmd.new(cmd)
+       runner.run
+       assert runner.status.success?
diff --git a/debian/patches/drop-coverage-check b/debian/patches/drop-coverage-check
new file mode 100644
index 0000000..b3ddf4b
--- /dev/null
+++ b/debian/patches/drop-coverage-check
@@ -0,0 +1,21 @@
+Author: Michael R. Crusoe <crusoe at ucdavis.edu>
+Description: drop code coverage tooling
+--- ruby-crb-blast.orig/test/helper.rb
++++ ruby-crb-blast/test/helper.rb
+@@ -1,16 +1,4 @@
+-require 'simplecov'
+-require 'coveralls'
+-
+-SimpleCov.formatter = SimpleCov::Formatter::MultiFormatter[
+-  SimpleCov::Formatter::HTMLFormatter,
+-  Coveralls::SimpleCov::Formatter
+-]
+-SimpleCov.start
+-
+ require 'test/unit'
+ begin; require 'turn/autorun'; rescue LoadError; end
+ require 'shoulda-context'
+ require 'crb-blast'
+-
+-Turn.config.format = :pretty
+-Turn.config.trace = 5
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..4966096
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1,2 @@
+drop-coverage-check
+drop-bindeps-req

-- 
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