[Cdd-commits] r534 - in projects/med/trunk/debian-med: debian tasks

[CDD Subversion Commit]

Author: tille
Date: Sat Feb  2 23:53:53 2008
New Revision: 534

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
Log:
Proper entry for glam2 as prospective package


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Sat Feb  2 23:53:53 2008
@@ -11,7 +11,7 @@
     - Added ballview and mustang as prospective packages
     - dialign-t is now official package - removed long
       description
-    - Added glam2
+    - Added glam2 as prospective package
     - textopo is now in texlilve-science, decreased this from Recommends
       to Suggests to not spoil systems with whole texlive installation
   * tasks/bio-dev: Added BioClipse as prospective package

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Sat Feb  2 23:53:53 2008
@@ -44,7 +44,29 @@
 Depends: dialign-t
 
 Depends: glam2
-
+Homepage: http://bioinformatics.org.au/glam2/
+Responsible: Steffen Moeller <steffen_moeller at gmx.de>
+License: Public Domain
+WNPP: 45237
+Pkg-Description: gapped protein motifs from unaligned sequences
+ GLAM2 is a software package for finding motifs in sequences, typically
+ amino-acid or nucleotide sequences. A motif is a re-occurring sequence
+ pattern: typical examples are the TATA box and the CAAX prenylation motif. The
+ main innovation of GLAM2 is that it allows insertions and deletions in motifs.
+ .
+ The package includes these programs: glam2 â~@~T for discovering motifs shared by
+ a set of sequences; glam2scan â~@~T for finding matches, in a sequence database,
+ to a motif discovered by glam2; glam2format â~@~T for converting glam2 motifs to
+ standard alignment formats; glam2mask â~@~T for masking glam2 motifs out of
+ sequences, so that weaker motifs can be found; glam2-purge â~@~T for removing
+ highly similar members of a set of sequences.
+ .
+ In this package, the fast Fourier algorithm (FFT) was enabled for glam2.
+ .
+ If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey
+ (2008) Discovering sequence motifs with arbitrary insertions and deletions,
+ PLoS Computational Biology (in press).
+		 
 Depends: tm-align
 Homepage: http://zhang.bioinformatics.ku.edu/TM-align/
 Responsible: Steffen Moeller <steffen_moeller at gmx.de>