[Cdd-commits] r600 - in projects/med/trunk/debian-med: debian tasks

[CDD Subversion Commit]

Author: tille
Date: Thu Mar 13 08:47:05 2008
New Revision: 600

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/bio-dev
Log:
More prospective packages


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Thu Mar 13 08:47:05 2008
@@ -4,6 +4,11 @@
     - Added libgenome
     - Added libmems as prospective package
     - Moved bioconductor from bio to bio-dev
+    - Added prospective projects where Steffen Möller started some
+      packaging work
+  * tasks/bio
+    - Added prospective projects where Steffen Möller started some
+      packaging work
 
  -- Andreas Tille <tille at debian.org>  Wed, 12 Mar 2008 21:38:09 +0100
 

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Mar 13 08:47:05 2008
@@ -396,7 +396,7 @@
 Homepage: http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv
 License: non-free
 Responsible: Steffen Moeller <moeller at debian.org>
-Pkg-URL: http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/cluster3/
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/cluster3/trunk/?rev=0&sc=0
 Pkg-Description: find clustering solutions for genome data
  Cluster 3.0 is an enhanced version of Cluster, which was originally
  developed by Michael Eisen while at Stanford University. The main
@@ -589,3 +589,17 @@
 Pkg-Description: DNA sequence assembly (Gap4), editing and analysis tools
  A fully developed set of DNA sequence assembly (Gap4), editing and
  analysis tools (Spin).
+
+Depends: dazzle
+Homepage: http://www.biojava.org/dazzle
+Responsible: Steffen Moeller <moeller at debian.org>
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/dazzle/trunk/?rev=0&sc=0
+Pkg-Description: Java-based DAS server
+ Dazzle is a general purpose server for the Distributed Annotation System
+ (DAS) protocol. It is implemented as a Java servlet, using the BioJava
+ APIs. Dazzle is a modular system which uses small "datasource" plugins to
+ provide access to a range of databases. Several general-purpose plugins
+ are included in the package, and it it straightforward to develop new
+ plugins to connect to your own databases.
+ .
+ Information on DAS is available from http://www.biodas.org/

Modified: projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev	(original)
+++ projects/med/trunk/debian-med/tasks/bio-dev	Thu Mar 13 08:47:05 2008
@@ -109,3 +109,25 @@
  input sequence, and this data can be stored externally (i.e. on disk) to
  further reduce memory requirements.
         
+Depends: libbio-das-perl
+Homepage: http://www.biodas.org/
+Responsible: Steffen Moeller <moeller at debian.org>
+License: Perl Artistic License
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/libbio-das-perl/trunk/?rev=0&sc=0
+Pkg-Description: interface to Distributed Annotation System (DAS)
+ Bio::Das provides access to genome sequencing and annotation databases
+ that export their data in Distributed Annotation System (DAS) format
+ version 1.5. Both unencrypted (http:) and SSL-encrypted (https:)
+ DAS servers are supported.
+
+Depends: libbiojava-java
+Homepage: www.biojava.org
+Responsible: Steffen Moeller <moeller at debian.org>
+License: LGPL
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/biojava/trunk/?rev=0&sc=0
+Pkg-Description: BioJava facilitates the processing of biological data
+ BioJava is an open-source project dedicated to providing a Java framework
+ for processing biological data. It include objects for manipulating
+ sequences, file parsers, DAS client and server support, access to BioSQL
+ and Ensembl databases, and powerful analysis and statistical routines
+ including a dynamic programming toolkit.