[Cdd-commits] r601 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Thu Mar 13 09:34:42 2008
New Revision: 601

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Pointed broken URLs to unofficial packages to SVN location of packaging stuff


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Mar 13 09:34:42 2008
@@ -381,11 +381,11 @@
  GAMGI provides a graphical user interface for the handling
  of molecular structures.
 
-Depends: biomart
+Depends: martj
 Homepage: http://www.ebi.ac.uk/biomart/
 Responsible: Steffen Moeller <moeller at debian.org>
 License: GPL
-Pkg-URL: http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/martj/
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/martj/trunk/?rev=0&sc=0
 Pkg-Description: distributed data integration system for biological data
  BioMart is a simple, distributed data integration system with
  powerful query capabilities. The BioMart data model has been applied
@@ -395,6 +395,7 @@
 Depends: cluster3
 Homepage: http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv
 License: non-free
+WNPP: #286167
 Responsible: Steffen Moeller <moeller at debian.org>
 Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/cluster3/trunk/?rev=0&sc=0
 Pkg-Description: find clustering solutions for genome data
@@ -425,16 +426,25 @@
 Homepage: http://jtreeview.sourceforge.net/
 Responsible: Steffen Moeller <moeller at debian.org>
 License: GPL
-Pkg-URL: http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/treeview/
-Pkg-Description: viewer for microarray data
+WNPP: 243771
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/treeview/trunk/?rev=0&sc=0
+Pkg-Description: Java re-implementation of Michael Eisen's TreeView
+ TreeView creates a matrix-like display of expression data, known as
+ Eisen clustering. The original implementation was a Windows program
+ named TreeView by Michael Eisen. This TreeView package, sometimes also
+ referred to as jTreeView, was rewritten in Java under a free license,
+ the original implementation also comes with the source code, but controls
+ commercial distribution. And it did not run on Unix.
+ .
  Java TreeView is an extensible viewer for microarray data in
  PCL or CDT format.
 
 Depends: smile
 Homepage: http://www-igm.univ-mlv.fr/~marsan/smile_english.html
 Responsible: Steffen Moeller <moeller at debian.org>
+WNPP: 221492
 License: GPL
-Pkg-URL: http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/smile/
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/smile/trunk/?rev=0&sc=0
 Pkg-Description: infer motifs in a set of sequences
  SMILE is a tool that infers motifs in a set of sequences, according to some
  criteria. It was first made to infer exceptional sites as binding sites in