[Cdd-commits] r602 - in projects/med/trunk/debian-med: debian tasks

[CDD Subversion Commit]

Author: tille
Date: Thu Mar 13 10:59:24 2008
New Revision: 602

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/tools
Log:
Added mssstest to tools, more prospective packages for bio


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Thu Mar 13 10:59:24 2008
@@ -9,6 +9,8 @@
   * tasks/bio
     - Added prospective projects where Steffen Möller started some
       packaging work
+  * tasks/tools
+    - Added mssstest
 
  -- Andreas Tille <tille at debian.org>  Wed, 12 Mar 2008 21:38:09 +0100
 

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Mar 13 10:59:24 2008
@@ -50,9 +50,9 @@
 
 Depends: meme
 Homepage: http://meme.nbcr.net/meme/
-Responsible: 
+Responsible: Steffen Moeller <moeller at debian.org>
 License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
-WNPP: 
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/meme/trunk/?rev=0&sc=0
 Pkg-Description: motif discovery and search
  MEME is a tool for discovering motifs in a group of related DNA or protein
  sequences.  A motif is a sequence pattern that occurs repeatedly in a group
@@ -603,6 +603,7 @@
 Depends: dazzle
 Homepage: http://www.biojava.org/dazzle
 Responsible: Steffen Moeller <moeller at debian.org>
+License: LGPL
 Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/dazzle/trunk/?rev=0&sc=0
 Pkg-Description: Java-based DAS server
  Dazzle is a general purpose server for the Distributed Annotation System
@@ -613,3 +614,46 @@
  plugins to connect to your own databases.
  .
  Information on DAS is available from http://www.biodas.org/
+
+Depends: mgltools
+Homepage: http://mgltools.scripps.edu
+Responsible: Steffen Moeller <moeller at debian.org>
+WNPP: 458811
+License: various custom non-free, mostly academia-only
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/trunk/?rev=0&sc=0
+Pkg-Description: preparation of proteins and ligands to investigate their binding
+ The package comprises AutoDockTools, Python Molecular Viewer, Vision and
+ many helping smaller python libraries which shall all become available
+ as Debian packages ... if their license permits. The essential mslib
+ library for instance comes with binaries which should not go into
+ Debian.  The analysis itself is performed with AutoDock, which was
+ recently made available under the GPL.
+ .
+ Upstream is very supportive but their binary-only libraries are of a 
+ third party. This set of tools is well known across biochemistry and
+ computational/structural biology.
+
+Depends: ecell
+Homepage: http://www.e-cell.org/
+Responsible: Steffen Moeller <moeller at debian.org>
+WNPP: 241195
+License: GPL
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/ecell/trunk/?rev=0&sc=0
+Pkg-Description: Concept and environment for constructing virtual cells on computers
+ The E-Cell Project is an international research project aiming at
+ developing necessary theoretical supports, technologies and software
+ platforms to allow precise whole cell simulation.
+ .
+ The E-Cell System is an object-oriented software suite for modeling,
+ simulation, and analysis of large scale complex systems such as
+ biological cells, architected by Kouichi Takahashi and written by
+ a team of developers.
+ .
+ The core part of the system, E-Cell Simulation Environment version 3,
+ allows many components driven by multiple algorithms with different
+ timescales to coexist.
+ . 
+ E-Cell System consists of the following three major parts:
+  * E-Cell Simulation Environment (or E-Cell SE)
+  * E-Cell Modeling Environment (or E-Cell ME)
+  * E-Cell Analysis Toolkit.

Modified: projects/med/trunk/debian-med/tasks/tools
==============================================================================
--- projects/med/trunk/debian-med/tasks/tools	(original)
+++ projects/med/trunk/debian-med/tasks/tools	Thu Mar 13 10:59:24 2008
@@ -7,3 +7,5 @@
 
 Suggests: cl-pubmed
 Why:      Strong dependency would cost installing a large amount of Common Lisp tools which in most cases is not worth the effort
+
+Depends: mssstest