[Cdd-commits] r1112 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Oct  1 07:47:58 2008
New Revision: 1112

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added trace2dbest


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Oct  1 07:47:58 2008
@@ -2901,7 +2901,7 @@
 
 Depends: tetra
 Homepage: http://www.megx.net/tetra/
-License: free
+License: free academic
 Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: tetranucleotide frequency calculator
@@ -2918,3 +2918,28 @@
  .
  This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
+
+Depends: trace2dbest
+Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/
+License: GPL
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: process trace files into dbEST submissions
+ Trace2dbest is part of the PartiGene pipeline.
+ .
+ Trace2dbest takes a series of sequence traces and converts them into
+ basecalled files. It also creates files in the appropriate format for
+ submission to dbEST and allows you to submit them directly if your
+ machine is configured to allow mailing to external sites.  The output
+ from trace2dbest can be used as input to the PartiGene program.
+ .
+ Trace2dbEST process raw sequenceing chromatograph trace files from
+ EST projects into quality-checked sequences, ready for submission to
+ dbEST. trace2dbEST guides you through the creation of all the
+ necessary files for submission of ESTs to dbEST. trace2dbest makes
+ use of other software (available free under academic licence) that
+ you will need to have installed, namely phred, cross_match and
+ (optionaly) BLAST.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html