[Cdd-commits] r1074 - projects/med/trunk/debian-med/tasks
CDD Subversion Commit
noreply at alioth.debian.org
Tue Sep 9 09:55:03 UTC 2008
Author: tille
Date: Tue Sep 9 09:55:02 2008
New Revision: 1074
Modified:
projects/med/trunk/debian-med/tasks/bio
Log:
Added mesquite
Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Sep 9 09:55:02 2008
@@ -2454,3 +2454,32 @@
.
This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
+
+Depends: mesquite
+Homepage: http://mesquiteproject.org/mesquite/mesquite.html
+License: LGPL
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: help biologists analyze comparative data about organisms
+ Mesquite is software for evolutionary biology, designed to help
+ biologists analyze comparative data about organisms. Its emphasis is
+ on phylogenetic analysis, but some of its modules concern population
+ genetics, while others do non-phylogenetic multivariate
+ analysis. Because it is modular, the analyses available depend on the
+ modules installed. Analyses include:
+ * Reconstruction of ancestral states (parsimony, likelihood)
+ * Tests of process of character evolution, including correlation
+ * Analysis of speciation and extinction rates
+ * Simulation of character evolution (categorical, DNA, continuous)
+ * Parametric bootstrapping (integration with programs such as PAUP*
+ and NONA)
+ * Morphometrics (PCA, CVA, geometric morphometrics)
+ * Coalescence (simulations, other calculations)
+ * Tree comparisons and simulations (tree similarity, Markov
+ speciation models)
+ There is a brief outline of features, which includes
+ screenshots. Mesquite is not primarily designed to infer phylogenetic
+ trees, but rather for diverse analyses using already inferred trees.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html
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